Ss1.1-Tra1-TCH01D090036.5.544
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACAGAATCTCCGCAGATTCCAAAGATGCGGGTCAGGGGCCCTCAAGCCATCCTCATTCTG CTGTCGGGGGCCCTGGCCCTGACCGGGACCTGGGCGGGTCCCCACTCCCTGAGCTATTTC TACACCGCCGTGTCCCGGCCCGACCGCGGGGACTCCCGCTTCATCGCCGTCGGCTACGTG GACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCCCCAATCCGCGGATGGAGCCGCGG GCGCCGTGGATAGAGAAGGAGGGGCAGGAGTATTGGGATGAGGAGACGCGGAAAGTCATG GGCAGCGCACAGACTTTCCGAGTGAACCTGCGCACAGCTCTTGGCTACTACAACCAGAGC GTGGCCGGGTCTCACACCTTCCAGTGGATGTACGGCTGCTACTTGGGACCAGACGGGCTC CTCCTCCGCGGGTACAGTCAGTACGCCTACGACAGCGCCGATTACATCGCCCTGAACGAG GACCTGCGCTCCTGGACCGCGGCGGACACGGCGGCTCAGATCTCCAAGCGCAAGTGGGAG ACGGCCAATGTGGCGGAGGGAGAGAGGAGCTACCTGCAGGGCCTGTGTGTGGAGTCGCTC CAGAAATACCTGGAGATGGGGAAGGACACGCTGCAGCGCGCAGAGCCTCCAAAGACACAT GTGACCCGCCACCCCAGCTCTGACCTCGGGGTCACCTTGAGGTGCTGGGCCCTGGGCTTC TACCCTAAGGAGATCTCCCTGACCTGGCAGCGCGAGGGCCAGGACCAGAGCCAGGACATG GAGCTGGTGGAGACCAGGCCCTCAGGGGATGGGACCTTCCAGAAGTGGGCGGCCCTGGTG GTGCCTCCTGGAGAGGAGCAGAGCTACACCTGCCATGTGCAGCACGAGGGCCTGCAGGAG CCCCTCACCCTGAGATGGGACCCTCCTCAGCCCCCCGTCCCCATCGTGGGCATCATTGTT GGCCTGGTTCTCGTCCTGGTCGCTGGAGCCATGGTGGCTGGAGTTGTGATCTGGAGGAAG AAGCGCTCAGGTGAAAAAGGAGGGAGCTACACTCAGGCTGCAGGCAGTGACAGTGCCCAG GGCTCCGATGTGTCCCTTACCAAGGATCCTAGAGTGTGAGACAGCTGCCTTGTGGGGACT GAGTGACACAGATTTGTTCACGTCCCACTTTGTGACTTCAGATCCCCTGACTCCTGTTTC TGCAGCAGCATTTGAATGTGTCTGTGTCCCTATGAGCATCCTGAGAGGAGGTGGGGACCC TGGCCCAGTCCTGCCCCCCACGTCCCCTCCTCACCCTGACCTGTGTTCTCTTCCCTGATC CTCTTTCCAGTTCCAGCAGGTGGGGGGGCTGGGCCATCTCCATCCCTGTCCTAACTCTGT GTTGCACTGGTAATGTCTTAATTTTCCTGTTGGAAATAAAATCCAATATGAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTGAGGCTGCCTAAAGTTTGA GAGAGAAAATAAATGAAGGCACTGAGAACTTTCTAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACAGAATCTCCGCAGATTCCAAAGATGCGGGTCAGGGGCCCTCAAGCCATCCTCATTCTG CTGTCGGGGGCCCTGGCCCTGACCGGGACCTGGGCGGGTCCCCACTCCCTGAGCTATTTC TACACCGCCGTGTCCCGGCCCGACCGCGGGGACTCCCGCTTCATCGCCGTCGGCTACGTG GACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCCCCAATCCGCGGATGGAGCCGCGG GCGCCGTGGATAGAGAAGGAGGGGCAGGAGTATTGGGATGAGGAGACGCGGAAAGTCATG GGCAGCGCACAGACTTTCCGAGTGAACCTGCGCACAGCTCTTGGCTACTACAACCAGAGC GTGGCCGGGTCTCACACCTTCCAGTGGATGTACGGCTGCTACTTGGGACCAGACGGGCTC CTCCTCCGCGGGTACAGTCAGTACGCCTACGACAGCGCCGATTACATCGCCCTGAACGAG GACCTGCGCTCCTGGACCGCGGCGGACACGGCGGCTCAGATCTCCAAGCGCAAGTGGGAG ACGGCCAATGTGGCGGAGGGAGAGAGGAGCTACCTGCAGGGCCTGTGTGTGGAGTCGCTC CAGAAATACCTGGAGATGGGGAAGGACACGCTGCAGCGCGCAGAGCCTCCAAAGACACAT GTGACCCGCCACCCCAGCTCTGACCTCGGGGTCACCTTGAGGTGCTGGGCCCTGGGCTTC TACCCTAAGGAGATCTCCCTGACCTGGCAGCGCGAGGGCCAGGACCAGAGCCAGGACATG GAGCTGGTGGAGACCAGGCCCTCAGGGGATGGGACCTTCCAGAAGTGGGCGGCCCTGGTG GTGCCTCCTGGAGAGGAGCAGAGCTACACCTGCCATGTGCAGCACGAGGGCCTGCAGGAG CCCCTCACCCTGAGATGGGACCCTCCTCAGCCCCCCGTCCCCATCGTGGGCATCATTGTT GGCCTGGTTCTCGTCCTGGTCGCTGGAGCCATGGTGGCTGGAGTTGTGATCTGGAGGAAG AAGCGCTCAGGTGAAAAAGGAGGGAGCTACACTCAGGCTGCAGGCAGTGACAGTGCCCAG GGCTCCGATGTGTCCCTTACCAAGGATCCTAGAGTGTGAGACAGCTGCCTTGTGGGGACT GAGTGACACAGATTTGTTCACGTCCCACTTTGTGACTTCAGATCCCCTGACTCCTGTTTC TGCAGCAGCATTTGAATGTGTCTGTGTCCCTATGAGCATCCTGAGAGGAGGTGGGGACCC TGGCCCAGTCCTGCCCCCCACGTCCCCTCCTCACCCTGACCTGTGTTCTCTTCCCTGATC CTCTTTCCAGTTCCAGCAGGTGGGGGGGCTGGGCCATCTCCATCCCTGTCCTAACTCTGT GTTGCACTGGTAATGTCTTAATTTTCCTGTTGGAAATAAAATCCAATATGAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTGAGGCTGCCTAAAGTTTGA GAGAGAAAATAAATGAAGGCACTGAGAACTTTCTAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 740-908, - strand, RNAz p=0.996054 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 740-908, - strand, RNAz p=0.996054 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 101-368, gnl|bosTau2|chr23 (21180741-21180474) | |
| 101-368, gnl|Hg17|chr6 (30335574-30335841) | |
| 101-368, gnl|Mm7|chr17 (33571220-33571487) | |
| 401-651, gnl|bosTau2|chr20 (36655627-36655873) | |
| 401-651, gnl|Hg17|chr6 (31347071-31346829) | |
| 401-651, gnl|Mm7|chr17 (32077846-32077606) | |
| 701-908, gnl|bosTau2|chr23 (24252946-24252736) | |
| 701-908, gnl|Hg17|chr6 (26200946-26201156) | |
| 701-908, gnl|Mm7|chr13 (23071884-23071674) | |
| 919-1046, gnl|bosTau2|chr23 (23093378-23093250) | |
| 919-1046, gnl|canFam2|chr12 (4016596-4016330) | |
| 919-1046, gnl|dasNov1|scaffold_10933 (47434-47692) | |
| 919-1046, gnl|echTel1|scaffold_220899 (9306-9020) | |
| 919-1046, gnl|galGal2|chr16_random (560492-560746) | |
| 919-1046, gnl|hg17|chr6 (29905404-29905712) | |
| 919-1046, gnl|Hg17|chr6 (29905571-29905709) | |
| 919-1046, gnl|loxAfr1|scaffold_35258 (6100-5803) | |
| 919-1046, gnl|mm7|chr17 (33494436-33494750) | |
| 919-1046, gnl|Mm7|chr17 (34514838-34514720) | |
| 919-1046, gnl|monDom2|scaffold_42 (15613369-15613654) | |
| 919-1046, gnl|oryCun1|scaffold_176700 (53039-53340) | |
| 919-1046, gnl|panTro1|chr5_random (23160096-23159804) | |
| 919-1046, gnl|rheMac2|chr4 (30965431-30965141) | |
| 919-1046, gnl|rn3|chr20_random (38116-37829) | |
| 1113-1536, gnl|bosTau2|chr23 (24592887-24593298) | |
| 1113-1536, gnl|Hg17|chr6 (30338262-30338706) | |
| 1113-1536, gnl|Mm7|chr17 (33574982-33575406) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 101-368, gnl|bosTau2|chr23 (21180741-21180474) | |
| 101-368, gnl|Hg17|chr6 (30335574-30335841) | |
| 101-368, gnl|Mm7|chr17 (33571220-33571487) | |
| 401-651, gnl|bosTau2|chr20 (36655627-36655873) | |
| 401-651, gnl|Hg17|chr6 (31347071-31346829) | |
| 401-651, gnl|Mm7|chr17 (32077846-32077606) | |
| 701-908, gnl|bosTau2|chr23 (24252946-24252736) | |
| 701-908, gnl|Hg17|chr6 (26200946-26201156) | |
| 701-908, gnl|Mm7|chr13 (23071884-23071674) | |
| 919-1046, gnl|bosTau2|chr23 (23093378-23093250) | |
| 919-1046, gnl|canFam2|chr12 (4016596-4016330) | |
| 919-1046, gnl|dasNov1|scaffold_10933 (47434-47692) | |
| 919-1046, gnl|echTel1|scaffold_220899 (9306-9020) | |
| 919-1046, gnl|galGal2|chr16_random (560492-560746) | |
| 919-1046, gnl|hg17|chr6 (29905404-29905712) | |
| 919-1046, gnl|Hg17|chr6 (29905571-29905709) | |
| 919-1046, gnl|loxAfr1|scaffold_35258 (6100-5803) | |
| 919-1046, gnl|mm7|chr17 (33494436-33494750) | |
| 919-1046, gnl|Mm7|chr17 (34514838-34514720) | |
| 919-1046, gnl|monDom2|scaffold_42 (15613369-15613654) | |
| 919-1046, gnl|oryCun1|scaffold_176700 (53039-53340) | |
| 919-1046, gnl|panTro1|chr5_random (23160096-23159804) | |
| 919-1046, gnl|rheMac2|chr4 (30965431-30965141) | |
| 919-1046, gnl|rn3|chr20_random (38116-37829) | |
| 1113-1536, gnl|bosTau2|chr23 (24592887-24593298) | |
| 1113-1536, gnl|Hg17|chr6 (30338262-30338706) | |
| 1113-1536, gnl|Mm7|chr17 (33574982-33575406) |
| Expressed library(ies): 39 entry(ies) | More info |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
| jej (9.69433) | |
| csp (7.41457) | |
| cag (6.19897) | |
| ill (4.91659) | |
| cli (3.20905) | |
| lnt (2.98847) | |
| col (2.5351) | |
| cga (2.51186) | |
| cov (2.2466) | |
| cly (2.17155) | |
| med (1.51128) | |
| jca (1.48148) | |
| duo (1.38241) | |
| nlu (1.15009) | |
| fty (1.05504) | |
| ton (0.702001) | |
| cje (0.660939) | |
| cty (0.62448) | |
| cst (0.560146) | |
| nmm (0.531209) | |
| mcp (0.511945) | |
| nco (0.485201) | |
| clu (0.478583) | |
| pgl (0.473934) | |
| hyp (0.42851) | |
| hlv (0.417769) | |
| nje (0.33184) | |
| che (0.272628) | |
| fce (0.271592) | |
| pla (0.267344) | |
| ute (0.265569) | |
| mas (0.210305) | |
| sin (0.174948) | |
| spl (0.143184) | |
| pty (0.142714) | |
| ste (0.135208) | |
| ese (0.126502) | |
| cbl (0.114797) | |
| ldo (0.0970026) |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (9.69433) | |
| csp (7.41457) | |
| cag (6.19897) | |
| ill (4.91659) | |
| cli (3.20905) | |
| lnt (2.98847) | |
| col (2.5351) | |
| cga (2.51186) | |
| cov (2.2466) | |
| cly (2.17155) | |
| med (1.51128) | |
| jca (1.48148) | |
| duo (1.38241) | |
| nlu (1.15009) | |
| fty (1.05504) | |
| ton (0.702001) | |
| cje (0.660939) | |
| cty (0.62448) | |
| cst (0.560146) | |
| nmm (0.531209) | |
| mcp (0.511945) | |
| nco (0.485201) | |
| clu (0.478583) | |
| pgl (0.473934) | |
| hyp (0.42851) | |
| hlv (0.417769) | |
| nje (0.33184) | |
| che (0.272628) | |
| fce (0.271592) | |
| pla (0.267344) | |
| ute (0.265569) | |
| mas (0.210305) | |
| sin (0.174948) | |
| spl (0.143184) | |
| pty (0.142714) | |
| ste (0.135208) | |
| ese (0.126502) | |
| cbl (0.114797) | |
| ldo (0.0970026) |