Non-Coding RNA Search

Ss1.1-Tra1-TCH01D090074.5

Sequence:


               
               TCTCCGACCTATACCACAGCTCATCGCCATGCCACTGGATCCTTGGCCCACTGAGCGAGG
TTGGGGTCCCGGCCCCCCCGCTGGCCTCGCCGCTGCGGGTGGGCACGGCCCCCAGCGCCC
TCACCAGGCACCATGGACTGGAAGACACTCCAAGCCCTACTGAGTGGGGTGAACAAGTAC
TCCACAGCCTTCGGGCGCATCTGGCTGTCGGTGGTGTTCGTCTTCCGCGTGCTGGTGTAT
GTGGTGGCCGCCGAGCGTGTGTGGGGGGATGAGCAGAAGGACTTTGACTGCAACACCAAG
CAGCCGGGCTGCACCAACGTTTGCTACGATGAGTTCTTCCCCATCTCCAACATCCGCCTC
TGGGCCCTGCAGCTCATCTTTGTCACGTGCCCGTCGCTGCTGGTCATCCTGCACGTGGCC
TACCGGGAGGAGCGGGAGCGGCGGCACCGCCAGAAGCACGGCGACCACTGCGCCAAGCTA
TACGACAACGCGGGCAAGAAGCACGGCGGCCTGTGGTGGACCTACCTGCTCAGCCTCATC
TTCAAGCTCATCATCGAGTTCCTCTTCCTCTACCTGCTGCACACTCTGTGGTACGGCTTC
GGCATGCCCCGCCTGGTCCAGTGCGCCAACGTGGCCCCCTGCCCCAACATCGTGGACTGC
TACATCGCCCGGCCCACGGAGAAGAAGCTCTTCACCTACTTCATGGTGGGCGCCTCCGCC
GTCTGCATCGTGCTCACCTTCTGCGAGATCTGCTACCTCATCTTCCACAGGATTGTGCGA
AGCCTTCCCAAGAAGAGGACCCCCCGAGGCGGCAGCCCCCCGTCCTCTGCCAGCCGGGCC
TCCACCTGCCGCTGCCACCACAAGCTGGTGGAGGCCGGGGAGCTGGGCCCAGACTCCAGT
GATGACAAGGTGCAAGCTTCGGCACCCAGCCTGACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCCGACCTATACCACAGCTCATCGCCATGCCACTGGATCCTTGGCCCACTGAGCGAGG
TTGGGGTCCCGGCCCCCCCGCTGGCCTCGCCGCTGCGGGTGGGCACGGCCCCCAGCGCCC
TCACCAGGCACCATGGACTGGAAGACACTCCAAGCCCTACTGAGTGGGGTGAACAAGTAC
TCCACAGCCTTCGGGCGCATCTGGCTGTCGGTGGTGTTCGTCTTCCGCGTGCTGGTGTAT
GTGGTGGCCGCCGAGCGTGTGTGGGGGGATGAGCAGAAGGACTTTGACTGCAACACCAAG
CAGCCGGGCTGCACCAACGTTTGCTACGATGAGTTCTTCCCCATCTCCAACATCCGCCTC
TGGGCCCTGCAGCTCATCTTTGTCACGTGCCCGTCGCTGCTGGTCATCCTGCACGTGGCC
TACCGGGAGGAGCGGGAGCGGCGGCACCGCCAGAAGCACGGCGACCACTGCGCCAAGCTA
TACGACAACGCGGGCAAGAAGCACGGCGGCCTGTGGTGGACCTACCTGCTCAGCCTCATC
TTCAAGCTCATCATCGAGTTCCTCTTCCTCTACCTGCTGCACACTCTGTGGTACGGCTTC
GGCATGCCCCGCCTGGTCCAGTGCGCCAACGTGGCCCCCTGCCCCAACATCGTGGACTGC
TACATCGCCCGGCCCACGGAGAAGAAGCTCTTCACCTACTTCATGGTGGGCGCCTCCGCC
GTCTGCATCGTGCTCACCTTCTGCGAGATCTGCTACCTCATCTTCCACAGGATTGTGCGA
AGCCTTCCCAAGAAGAGGACCCCCCGAGGCGGCAGCCCCCCGTCCTCTGCCAGCCGGGCC
TCCACCTGCCGCTGCCACCACAAGCTGGTGGAGGCCGGGGAGCTGGGCCCAGACTCCAGT
GATGACAAGGTGCAAGCTTCGGCACCCAGCCTGACC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q58D78_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q58D78_BOVIN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               98-936, gnl|bosTau2|chr3 (78132820-78131982)
               

               
               98-936, gnl|Hg17|chr1 (34919431-34920260)
               

               
               98-936, gnl|Mm7|chr4 (126771419-126770581)
               


               
               128-758, gnl|bosTau2|chr12 (20119569-20120211)
               

               
               128-758, gnl|Hg17|chr13 (19695624-19694982)
               

               
               128-758, gnl|Mm7|chr14 (51992526-51991884)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               98-936, gnl|bosTau2|chr3 (78132820-78131982)
               

               
               98-936, gnl|Hg17|chr1 (34919431-34920260)
               

               
               98-936, gnl|Mm7|chr4 (126771419-126770581)
               


               
               128-758, gnl|bosTau2|chr12 (20119569-20120211)
               

               
               128-758, gnl|Hg17|chr13 (19695624-19694982)
               

               
               128-758, gnl|Mm7|chr14 (51992526-51991884)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fli (0.202881)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.202881)

	98-936, gnl\|bosTau2\|chr3 (78132820-78131982)
	98-936, gnl\|Hg17\|chr1 (34919431-34920260)
	98-936, gnl\|Mm7\|chr4 (126771419-126770581)

	128-758, gnl\|bosTau2\|chr12 (20119569-20120211)
	128-758, gnl\|Hg17\|chr13 (19695624-19694982)
	128-758, gnl\|Mm7\|chr14 (51992526-51991884)