Ss1.1-Tra1-TCH01D090082.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTATGGCCGCGCTCTACGGGGGTGTGGAGGGGTCTTCAGTGACCTCTTTCTGATATTCCT GAAAATGCTGATGGCGGGACCAGCGGCGGCGGTAGCAGCAGTATGGCCGCGCTCTACGGG GGTGTGGAGGGGGGAGGCACACGGTCCAAGGTCCTTTTACTCTCAGAGGATGGGCAGATC CTGGCAGAAGCGGATGGACTCAGCACAAACCACTGGCTGATCGGGACGGACAAGTGTGTG GAGAGGATCAACGAGATGGTGAACAGGGCCAAACGGAAAGCAGGGGTGGATCCTCTGGTA CCTCTACGAAGCTTGGGCCTATCCCTGAGCGGTGGGGATCAGGAGGACGCGGTGAGGATC CTGATGGAGGAGCTGAGGGACCGATTTCCCTACCTGAGTGAAAGCTACTTAATCACCACC GACGCGGCCGGCTCCATCGCCACAGCTACGCCGGATGGTGGCATCGTGCTCATCTCTGGG ACAGGCTCCAACTGTAGGCTTATCAACCCCGATGGCTCTGAGAGTGGCTGTGGCGGCTGG GGCCACATGATGGGAGATGAAGGCTCAGCCTACTGGATTGCACACCAAGCAGTGAAAATA GTGTTTGACTCTATTGACAACCTAGAGGCGGCGCCTCACGACATTGGCTACGTCAAACAG GCCATGTTCAACTATTTCCAGGTGCCAGATCGGCTAGGAATCCTCACCCACCTGTATAGG GACTTCGATAAATGCAGGTTTGCTGGCTTCTGCCGGAAAGTTGCAGAAGGTGCTCAGCAG GGAGACCCCCTCTCCCGCTATATCTTCAGGAAGGCAGGGGAGATGCTGGGCAGACACGTT GTGGCAGTGCTGCCTGAGATCGACCCGGTCTTGTTCCAAGGGGAGATTGGCCTCCCCATC CTGTGTGTGGGCTCTGTGTGGAAGAGCTGGGAGCTGCTGAAGGAAGGTTTCCTTTTGGCG CTGACCCAGGGCAGAGAAATCCAGGCTCAGAACTCCTTCTCCAGCTTCACCCTGATGAAG CTGCGGCACTCGTCCGCCCTGGGCGGGGCCAGCCTAGGCGCCAGGCACATTGGGCACCTC CTCCCCATGGACTACAGTGTCAATGCCGTTGCCTTCTACTCCTATGCCTTCTCCTAGGGG GTGGCCCCGGCTCCACCCGCTCCAAGCCCAGGGGACATTGGGTGCCGGAAGACAGGAGGG TTTTTCTCCTTTTCCTTTTTTTTTTTTTTTTAAAGAAACATAGAGAAAATAAATGCACTT TACCCAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTATGGCCGCGCTCTACGGGGGTGTGGAGGGGTCTTCAGTGACCTCTTTCTGATATTCCT GAAAATGCTGATGGCGGGACCAGCGGCGGCGGTAGCAGCAGTATGGCCGCGCTCTACGGG GGTGTGGAGGGGGGAGGCACACGGTCCAAGGTCCTTTTACTCTCAGAGGATGGGCAGATC CTGGCAGAAGCGGATGGACTCAGCACAAACCACTGGCTGATCGGGACGGACAAGTGTGTG GAGAGGATCAACGAGATGGTGAACAGGGCCAAACGGAAAGCAGGGGTGGATCCTCTGGTA CCTCTACGAAGCTTGGGCCTATCCCTGAGCGGTGGGGATCAGGAGGACGCGGTGAGGATC CTGATGGAGGAGCTGAGGGACCGATTTCCCTACCTGAGTGAAAGCTACTTAATCACCACC GACGCGGCCGGCTCCATCGCCACAGCTACGCCGGATGGTGGCATCGTGCTCATCTCTGGG ACAGGCTCCAACTGTAGGCTTATCAACCCCGATGGCTCTGAGAGTGGCTGTGGCGGCTGG GGCCACATGATGGGAGATGAAGGCTCAGCCTACTGGATTGCACACCAAGCAGTGAAAATA GTGTTTGACTCTATTGACAACCTAGAGGCGGCGCCTCACGACATTGGCTACGTCAAACAG GCCATGTTCAACTATTTCCAGGTGCCAGATCGGCTAGGAATCCTCACCCACCTGTATAGG GACTTCGATAAATGCAGGTTTGCTGGCTTCTGCCGGAAAGTTGCAGAAGGTGCTCAGCAG GGAGACCCCCTCTCCCGCTATATCTTCAGGAAGGCAGGGGAGATGCTGGGCAGACACGTT GTGGCAGTGCTGCCTGAGATCGACCCGGTCTTGTTCCAAGGGGAGATTGGCCTCCCCATC CTGTGTGTGGGCTCTGTGTGGAAGAGCTGGGAGCTGCTGAAGGAAGGTTTCCTTTTGGCG CTGACCCAGGGCAGAGAAATCCAGGCTCAGAACTCCTTCTCCAGCTTCACCCTGATGAAG CTGCGGCACTCGTCCGCCCTGGGCGGGGCCAGCCTAGGCGCCAGGCACATTGGGCACCTC CTCCCCATGGACTACAGTGTCAATGCCGTTGCCTTCTACTCCTATGCCTTCTCCTAGGGG GTGGCCCCGGCTCCACCCGCTCCAAGCCCAGGGGACATTGGGTGCCGGAAGACAGGAGGG TTTTTCTCCTTTTCCTTTTTTTTTTTTTTTTAAAGAAACATAGAGAAAATAAATGCACTT TACCCAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 945-1063, - strand, RNAz p=0.941745 | |
| 1104-1266, + strand, RNAz p=0.967825 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 945-1063, - strand, RNAz p=0.941745 | |
| 1104-1266, + strand, RNAz p=0.967825 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AK092876, + |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 312-460, gnl|bosTau2|chr11 (10020524-10020672) | |
| 312-460, gnl|Hg17|chr2 (71210467-71210615) | |
| 312-460, gnl|Mm7|chr6 (83823337-83823485) | |
| 566-683, gnl|bosTau2|chr11 (10022241-10022358) | |
| 566-683, gnl|canFam2|chr17 (54538515-54538388) | |
| 566-683, gnl|danRer3|chr7 (45565553-45565677) | |
| 566-683, gnl|echTel1|scaffold_302974 (7245-7372) | |
| 566-683, gnl|fr1|chrUn (267227719-267227598) | |
| 566-683, gnl|hg17|chr2 (71212261-71212388) | |
| 566-683, gnl|Hg17|chr2 (71212264-71212381) | |
| 566-683, gnl|loxAfr1|scaffold_5410 (41038-41165) | |
| 566-683, gnl|mm7|chr6 (83824650-83824776) | |
| 566-683, gnl|Mm7|chr6 (83824653-83824770) | |
| 566-683, gnl|monDom2|scaffold_157 (892323-892193) | |
| 566-683, gnl|oryCun1|scaffold_193262 (16536-16662) | |
| 566-683, gnl|panTro1|chr12 (73528194-73528321) | |
| 566-683, gnl|rheMac2|chr13 (71327033-71327160) | |
| 566-683, gnl|rn3|chr4 (118238587-118238713) | |
| 566-683, gnl|tetNig1|chrUn_random (21033527-21033396) | |
| 566-683, gnl|xenTro1|scaffold_140 (418512-418635) | |
| 768-869, gnl|bosTau2|chr11 (10024608-10024709) | |
| 768-869, gnl|canFam2|chr17 (54535910-54535809) | |
| 768-869, gnl|dasNov1|scaffold_54536 (10519-10620) | |
| 768-869, gnl|echTel1|scaffold_281781 (3327-3425) | |
| 768-869, gnl|hg17|chr2 (71215388-71215489) | |
| 768-869, gnl|Hg17|chr2 (71215387-71215488) | |
| 768-869, gnl|loxAfr1|scaffold_5410 (43040-43141) | |
| 768-869, gnl|mm7|chr6 (83826475-83826576) | |
| 768-869, gnl|Mm7|chr6 (83826474-83826575) | |
| 768-869, gnl|monDom2|scaffold_157 (886126-886025) | |
| 768-869, gnl|oryCun1|scaffold_211293 (13082-12980) | |
| 768-869, gnl|panTro1|chr12 (73531320-73531421) | |
| 768-869, gnl|rheMac2|chr13 (71330373-71330474) | |
| 768-869, gnl|rn3|chr4 (118240270-118240371) | |
| 768-869, gnl|tetNig1|chrUn_random (21033154-21033066) | |
| 768-869, gnl|xenTro1|scaffold_140 (419236-419337) | |
| 945-1266, gnl|bosTau2|chr11 (10025912-10026249) | |
| 945-1266, gnl|Hg17|chr2 (71217101-71217418) | |
| 945-1266, gnl|Mm7|chr6 (83827651-83827934) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 312-460, gnl|bosTau2|chr11 (10020524-10020672) | |
| 312-460, gnl|Hg17|chr2 (71210467-71210615) | |
| 312-460, gnl|Mm7|chr6 (83823337-83823485) | |
| 566-683, gnl|bosTau2|chr11 (10022241-10022358) | |
| 566-683, gnl|canFam2|chr17 (54538515-54538388) | |
| 566-683, gnl|danRer3|chr7 (45565553-45565677) | |
| 566-683, gnl|echTel1|scaffold_302974 (7245-7372) | |
| 566-683, gnl|fr1|chrUn (267227719-267227598) | |
| 566-683, gnl|hg17|chr2 (71212261-71212388) | |
| 566-683, gnl|Hg17|chr2 (71212264-71212381) | |
| 566-683, gnl|loxAfr1|scaffold_5410 (41038-41165) | |
| 566-683, gnl|mm7|chr6 (83824650-83824776) | |
| 566-683, gnl|Mm7|chr6 (83824653-83824770) | |
| 566-683, gnl|monDom2|scaffold_157 (892323-892193) | |
| 566-683, gnl|oryCun1|scaffold_193262 (16536-16662) | |
| 566-683, gnl|panTro1|chr12 (73528194-73528321) | |
| 566-683, gnl|rheMac2|chr13 (71327033-71327160) | |
| 566-683, gnl|rn3|chr4 (118238587-118238713) | |
| 566-683, gnl|tetNig1|chrUn_random (21033527-21033396) | |
| 566-683, gnl|xenTro1|scaffold_140 (418512-418635) | |
| 768-869, gnl|bosTau2|chr11 (10024608-10024709) | |
| 768-869, gnl|canFam2|chr17 (54535910-54535809) | |
| 768-869, gnl|dasNov1|scaffold_54536 (10519-10620) | |
| 768-869, gnl|echTel1|scaffold_281781 (3327-3425) | |
| 768-869, gnl|hg17|chr2 (71215388-71215489) | |
| 768-869, gnl|Hg17|chr2 (71215387-71215488) | |
| 768-869, gnl|loxAfr1|scaffold_5410 (43040-43141) | |
| 768-869, gnl|mm7|chr6 (83826475-83826576) | |
| 768-869, gnl|Mm7|chr6 (83826474-83826575) | |
| 768-869, gnl|monDom2|scaffold_157 (886126-886025) | |
| 768-869, gnl|oryCun1|scaffold_211293 (13082-12980) | |
| 768-869, gnl|panTro1|chr12 (73531320-73531421) | |
| 768-869, gnl|rheMac2|chr13 (71330373-71330474) | |
| 768-869, gnl|rn3|chr4 (118240270-118240371) | |
| 768-869, gnl|tetNig1|chrUn_random (21033154-21033066) | |
| 768-869, gnl|xenTro1|scaffold_140 (419236-419337) | |
| 945-1266, gnl|bosTau2|chr11 (10025912-10026249) | |
| 945-1266, gnl|Hg17|chr2 (71217101-71217418) | |
| 945-1266, gnl|Mm7|chr6 (83827651-83827934) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| ill (0.526778) | |
| cga (0.279096) | |
| pla (0.267344) | |
| cov (0.264306) | |
| eru (0.240096) | |
| eje (0.197668) | |
| aor (0.195274) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| cag (0.151194) | |
| che (0.136314) | |
| clu (0.119646) | |
| spc (0.113366) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.526778) | |
| cga (0.279096) | |
| pla (0.267344) | |
| cov (0.264306) | |
| eru (0.240096) | |
| eje (0.197668) | |
| aor (0.195274) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| cag (0.151194) | |
| che (0.136314) | |
| clu (0.119646) | |
| spc (0.113366) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) |