Non-Coding RNA Search

Ss1.1-Tra1-TCH01D100025.5

Sequence:


               
               TTACCTGAGAATCCAGCCGAAACGGCTGCTGGGGCAAGAAAGTTCTTGTTAGAACTTTCC
ACCTCCGGCTTCCCCTCCACCTCTCTTACTGTCCCAACCTTCTGAGACGCTTTTTCTCCT
CCCGAAGATTTATCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTTTTTTTTTTTTTTTCCC
CTTTTCCCACCCGATGCTTGCTTTGCATTTGGGAAGAGGTGATTTCTAGAGTGGCCAGGT
GGGACGCCTCTCTTCCCCCTTATTTGGTTTATTTATTATTGTTGGGGGGGTATTTTCTTT
TTTAAGTCCTATTTTGTTCGGTCCGGGGAGTTTCGCCCCCCCACCCCTGCCCGGCTCCGC
GGCGCGGAGGATGGTGTGGAAATGGCTGGGAGCGTTGGTAGTGTTCCCTCTGCAGATGAT
CTATCTGGTGGTGAAAGCTGCCATCGGACTGGTGCTGCCCGCCAAGCTGCGGGACCTGTC
GCGGGAAAACGTCCTCATCACCGGCGGCGGGAGAGGCATCGGGCGCCAGCTCGCTAGGGA
GTTCGCAGAACGCGGCGCCAGAAAGATTGTTCTCTGGGGCCGGACTGAGAAATGCCTGAA
GGAGACGACGGAGGAGATTCGGCAGATGGGCACCGAGTGCCACTACTTCATCTGCGACGT
GGGCAACCGGGAAGAGGTGTACCAGACGGCCAAAGCTGTCCGGGAGAAGGTGGGTGACAT
CACCATCCTGGTGAACAATGCCGCTGTGGTCCATGGGAAGAGTCTGATGGACAGTGATGA
CGATGCCCTTCTCAAGTCCCAGCATATCAACACCCTGGGCCAGTTCTGGACCACCAAGGC
CTTCTTGCCGCGGATGCTGGAGCTGCAGAACGGCCACATCGTGTGTCTCAACTCCGTGCT
GGCGCTTTCTGCCATCCCCGGTGCCATCGACTACTGCACGTCCAAGGCCTCAGCCTTCGC
CTTCATGGAGAGCCTGACCCTGGGGCTGCTGGACTGTCCGGGGGTCAGCGCCACCACCGT
GCTGCCTTTCCACACCAGCACCGAGATGTTTCAGGGCATGAGGGTCAGGTTCCCCAACCT
CTTTCCCCCCCTGAAGCCGGAGACGGTGGCCCGGAGGACGGTGGAAGCCGTGCAGCTCAA
TCAGACCCTCCTCCTGCTCCCGTGGACCATGCATGTCCTCATTATCTTGAAAAGCATACT
CCCACAGGCTGCCCTCGAGGAGATCCACAGATTCTCAGGAACCTACACCTGCATGAACAC
TTTCAAAGGGCGCACCTAAAAGCAGGACGCAGGGACGGGCTCGAAAGCTGCGGAACCAGC
GGGGACTGGGCACCCAGGCGCACGCCCACGCACCCGCCCCTTGGCACACTTCTGCTGGGT
GAGCAGGACTGCTCCTGTCCTGGGGAAGAATCCGGCAGTACCCCCAGGCCAGCCCCAGGA
CCTTTGCACAGGATCGATGGGCATAACTCTGACACCCGTGGGGAGGCAGGAAACCAGCCA
GCAGCCGCCTTGACACTTTTGTATGTTTCTGATTCTCTAGAGTTTATTGTTAAATTGCTT
CTCGAGTCTAATGCACATTTCCAGGAGGCTCTGTGCCCATGCGCTCCTCCTCCCCCTCCA
AAATCCACGCATCCTCAGCTTGTGCAAACTGGTTGAACAGCAGGAACACAAAATAAAGAG
AGATGGCTTTTGCGAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTACCTGAGAATCCAGCCGAAACGGCTGCTGGGGCAAGAAAGTTCTTGTTAGAACTTTCC
ACCTCCGGCTTCCCCTCCACCTCTCTTACTGTCCCAACCTTCTGAGACGCTTTTTCTCCT
CCCGAAGATTTATCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTTTTTTTTTTTTTTTCCC
CTTTTCCCACCCGATGCTTGCTTTGCATTTGGGAAGAGGTGATTTCTAGAGTGGCCAGGT
GGGACGCCTCTCTTCCCCCTTATTTGGTTTATTTATTATTGTTGGGGGGGTATTTTCTTT
TTTAAGTCCTATTTTGTTCGGTCCGGGGAGTTTCGCCCCCCCACCCCTGCCCGGCTCCGC
GGCGCGGAGGATGGTGTGGAAATGGCTGGGAGCGTTGGTAGTGTTCCCTCTGCAGATGAT
CTATCTGGTGGTGAAAGCTGCCATCGGACTGGTGCTGCCCGCCAAGCTGCGGGACCTGTC
GCGGGAAAACGTCCTCATCACCGGCGGCGGGAGAGGCATCGGGCGCCAGCTCGCTAGGGA
GTTCGCAGAACGCGGCGCCAGAAAGATTGTTCTCTGGGGCCGGACTGAGAAATGCCTGAA
GGAGACGACGGAGGAGATTCGGCAGATGGGCACCGAGTGCCACTACTTCATCTGCGACGT
GGGCAACCGGGAAGAGGTGTACCAGACGGCCAAAGCTGTCCGGGAGAAGGTGGGTGACAT
CACCATCCTGGTGAACAATGCCGCTGTGGTCCATGGGAAGAGTCTGATGGACAGTGATGA
CGATGCCCTTCTCAAGTCCCAGCATATCAACACCCTGGGCCAGTTCTGGACCACCAAGGC
CTTCTTGCCGCGGATGCTGGAGCTGCAGAACGGCCACATCGTGTGTCTCAACTCCGTGCT
GGCGCTTTCTGCCATCCCCGGTGCCATCGACTACTGCACGTCCAAGGCCTCAGCCTTCGC
CTTCATGGAGAGCCTGACCCTGGGGCTGCTGGACTGTCCGGGGGTCAGCGCCACCACCGT
GCTGCCTTTCCACACCAGCACCGAGATGTTTCAGGGCATGAGGGTCAGGTTCCCCAACCT
CTTTCCCCCCCTGAAGCCGGAGACGGTGGCCCGGAGGACGGTGGAAGCCGTGCAGCTCAA
TCAGACCCTCCTCCTGCTCCCGTGGACCATGCATGTCCTCATTATCTTGAAAAGCATACT
CCCACAGGCTGCCCTCGAGGAGATCCACAGATTCTCAGGAACCTACACCTGCATGAACAC
TTTCAAAGGGCGCACCTAAAAGCAGGACGCAGGGACGGGCTCGAAAGCTGCGGAACCAGC
GGGGACTGGGCACCCAGGCGCACGCCCACGCACCCGCCCCTTGGCACACTTCTGCTGGGT
GAGCAGGACTGCTCCTGTCCTGGGGAAGAATCCGGCAGTACCCCCAGGCCAGCCCCAGGA
CCTTTGCACAGGATCGATGGGCATAACTCTGACACCCGTGGGGAGGCAGGAAACCAGCCA
GCAGCCGCCTTGACACTTTTGTATGTTTCTGATTCTCTAGAGTTTATTGTTAAATTGCTT
CTCGAGTCTAATGCACATTTCCAGGAGGCTCTGTGCCCATGCGCTCCTCCTCCCCCTCCA
AAATCCACGCATCCTCAGCTTGTGCAAACTGGTTGAACAGCAGGAACACAAAATAAAGAG
AGATGGCTTTTGCGAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55961779|emb|CAI15000.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55961779|emb|CAI15000.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               161-565, gnl|bosTau2|chr16 (40740734-40740332)
               

               
               161-565, gnl|Hg17|chr1 (12611814-12611425)
               

               
               161-565, gnl|Mm7|chr4 (144305727-144306138)
               


               
               829-1070, gnl|bosTau2|chr16 (40702170-40701929)
               

               
               829-1070, gnl|Hg17|chr1 (12573251-12573010)
               

               
               829-1070, gnl|Mm7|chr4 (144332269-144332510)
               


               
               1193-1571, gnl|bosTau2|chr16 (40692119-40691741)
               

               
               1193-1571, gnl|Hg17|chr1 (12562721-12562349)
               

               
               1193-1571, gnl|Mm7|chr4 (144339562-144339934)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               161-565, gnl|bosTau2|chr16 (40740734-40740332)
               

               
               161-565, gnl|Hg17|chr1 (12611814-12611425)
               

               
               161-565, gnl|Mm7|chr4 (144305727-144306138)
               


               
               829-1070, gnl|bosTau2|chr16 (40702170-40701929)
               

               
               829-1070, gnl|Hg17|chr1 (12573251-12573010)
               

               
               829-1070, gnl|Mm7|chr4 (144332269-144332510)
               


               
               1193-1571, gnl|bosTau2|chr16 (40692119-40691741)
               

               
               1193-1571, gnl|Hg17|chr1 (12562721-12562349)
               

               
               1193-1571, gnl|Mm7|chr4 (144339562-144339934)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

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               cki (0.991408)
               

               
               vin (0.665115)
               

               
               cov (0.528611)
               

               
               cly (0.482567)
               

               
               cag (0.453583)
               

               
               elu (0.385356)
               

               
               med (0.348756)
               

               
               mcp (0.341297)
               

               
               cut (0.339847)
               

               
               che (0.272628)
               

               
               cty (0.20816)
               

               
               jej (0.197844)
               

               
               eje (0.197668)
               

               
               sag (0.182715)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               jca (0.11396)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.991408)
               

               
               vin (0.665115)
               

               
               cov (0.528611)
               

               
               cly (0.482567)
               

               
               cag (0.453583)
               

               
               elu (0.385356)
               

               
               med (0.348756)
               

               
               mcp (0.341297)
               

               
               cut (0.339847)
               

               
               che (0.272628)
               

               
               cty (0.20816)
               

               
               jej (0.197844)
               

               
               eje (0.197668)
               

               
               sag (0.182715)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               jca (0.11396)

	161-565, gnl\|bosTau2\|chr16 (40740734-40740332)
	161-565, gnl\|Hg17\|chr1 (12611814-12611425)
	161-565, gnl\|Mm7\|chr4 (144305727-144306138)

	829-1070, gnl\|bosTau2\|chr16 (40702170-40701929)
	829-1070, gnl\|Hg17\|chr1 (12573251-12573010)
	829-1070, gnl\|Mm7\|chr4 (144332269-144332510)

	1193-1571, gnl\|bosTau2\|chr16 (40692119-40691741)
	1193-1571, gnl\|Hg17\|chr1 (12562721-12562349)
	1193-1571, gnl\|Mm7\|chr4 (144339562-144339934)

	cki (0.991408)
	vin (0.665115)
	cov (0.528611)
	cly (0.482567)
	cag (0.453583)
	elu (0.385356)
	med (0.348756)
	mcp (0.341297)
	cut (0.339847)
	che (0.272628)
	cty (0.20816)
	jej (0.197844)
	eje (0.197668)
	sag (0.182715)
	eye (0.170503)
	csp (0.161186)
	cli (0.152812)
	pty (0.142714)
	lnt (0.142308)
	cst (0.140036)
	hlv (0.139256)
	nca (0.136874)
	nmm (0.132802)
	ute (0.132784)
	jca (0.11396)