Non-Coding RNA Search

Ss1.1-Tra1-TCH01D100067.5

Sequence:


               
               CGGATTCTCAGACAAGGCTTGCGGATGCCCCGCGGCCATCATTTAACTGCGCCCGCAGAG
CAGTTACGGTTTGTCACTCGACCCTCCCGGATCGCCTCGTTTGTCCCTAGTGAGACCCCG
AGGCTCTGCCCGCGCCGGGCTTCTCAATAGCTGGATGCATGTCGTGCTCTGGGCAGCGCG
GGCGCAGGGCACGCGTTCGCGCACACCCGCGCACACACGAAAACGCGCAAGACTAATTTT
CTGGAGTTTCTGCCCCTGCTCTGCGTCAGCCCTCACGTCACTTCGCCAGCAGTAGCAGAG
GCGGCGGCGGCGGCGGCGGCGGCGGCTCCCGGAATTGGGTTGGAGCAGGAGCCTCGCTCG
CTCCTTAGCTCGCGCTCTCCGAGCTCCGTGCCCAGCGGCAGGAGGAGCCTGGACCCAGGC
GCCGCTGGCGGGCGGTAGGCGCCGGAGCCCGGCCCCGAGGTGCGTCCCGGATCCCAGTGC
GCGTCTAGGAAGGAGCCTGCGTCCCAGAGCGTCCCAGGAGCGCGGCCGCCCGGTGCTCGG
CTCCCCGGCCATGCAGCGGCGGCCGAGGCGCAGCTCCCAGAGACGGTAGCGCCCCCTGTG
AGGAGGCCCGAAATGCCCCTGCCACTGTGAACCCGCCAGGACGCGCTCAGCTCCGGACAC
GCTCGGCTCTGCGCGCCTGCGAGGAGCACCGAGTGGAGAGAGAGCGGCAGGCGCAGCAAA
GGCCGCCCAGCACCGGCAGGGGAGGCCGGCCGGTGCGGTTCAGGGACACGTACTCAGTCT
GACTCGAGCTGGCACTGGTGGCTAGGAATGTCGTCCTGGACGAGGTGGCATGGGCCTGCC
ATGGCGCGGCTCTGGGGCTTCTGCTGGCTGATTGTGGGCTTCTGGAGGGCCGCTCTTGCC
TGTCCCACATCCTGCAAATGCAGCGCCTCTCGGATCTGGTGCAGCGACCCTTCTCCTGGC
ATCGTGGCATTCCCGAGGTTGGAGCCTTCCACTGCAGACCCTGAGAACATCACCGAAATT
TATATTGCAAATCAGAAAAGATTAGAAATCATCAATGAAGATGATGTTGAAGCTTATGCA
GGACTGAAAAATCTGACCATTGTGGATTCCGGATTAAAATCTGTGGCTCATAAAGCATTT
CTGAAAAATAGCAACTTACAGCACATCAATTTTACCCGAAATAAACTGACGATTTTGTCT
AGGAAACATTTTCGTCACCTTGATTTGTCTGAGCTGATCCTGGTGGGCAATCCATTTAGA
TGCTCCTGTGACATTATGTGGATCAAGACTCTTCAGGAAACTAAGCCCAGTCTAGAAACT
CAGGATTTGTACTGCCTGGATGAAAACAGCAAGAATATTTCCCTGGCAAACCTGCAGATA
CCCAATTGTGGTTTGCCGTCAGCAAATTTGGCTGCCCCAAACCTCACCGTGGAGGAGGGA
AAGTCTATCACGCTATCTTGTAGTGTTGCAGGTGATCCAGTTCCGAATTTGTACTGGGAT
GTCGGTAATCTGGTTTCCAAGCACATGAATGAAACAAGCTACACACAGGGCTCCTTAAGG
ATAACTAACATTTCATCTGATGACAGTGGAAAGCAAATCTCTTGTGTGGCAGAAAATCTC
GTAGGAGAAGATCAAGATTCTGTCAACCTCACTGTACATTTTGCTCCAACTATCACATTT
CTCGAATCTCCAACCTCAGACCACCACTGGTGCATTCCATTCACTGTGAAAGGCAACCCC
AAACCAGCGCTTCAGTGGTTCTATAACGGGGCAATTTTGAATGAGTCCAAATACATCTGT
ACTAAAATCCATGTTACCAATCACACGGAGTACCACGGCTGCCTCCAGCTGGATAATCCT
ACTCACATGAACAATGGGGACTACAAGTTAGTGGCCAAGAATGAGTATGGGAAGGATGAG
AAACAGATTTCTGCTCACTTCATGGGCTGGCCTGGAATCGATGACGGTGCAAACCCAAAT
TATCCTGATGTAATTTATGAAGATTATGGGACTGCAGCGAATGATATTGGGGACACCACC
AACAGAAGCAATGAAATCCCTTCCACAGATGTTGCTGACAAAACTGGTCGAGAACATCTC
TCGGTCTACGCTGTGGTAGTAATTGCATCGGTAGTGGGGTTTTGTCTGCTGGTAATGCTG
TTTCTGCTGAAGTTGGCAAGACACTCCAAGTTTGGCATGAAAGGTTTTGTTTTGTTTCAT
AAGATCCCACTGGATGGGTAACTGAAATAAAGGAAAAGACAGAGAAGGGGGCTGTGGTGC
TTGTTGGTTGATGCTGCCTTGTAAGCTGGACTCTTGGGGCTGGCGTGGTTTCTCCCGCCC
GGGACAGGCCATTTCTCTGGGGTTTTCTGCTAGAGGTGGGTGGTGTTTGCAGGAGGTACT
GCTCGAAGCCTGCAGGTGCTGTGAGCTGTGAACAGGGGCCACCAAGGCAGACTCAGCTCA
CAGGCAGCTAAGCAGAAACTCAAGAAAACATTTTAATACTTCTCTTTTGATCTTACAATC
GTTCACATGCAAAGTTGAAATGAAATGCCACCGGATTGTGTTTCTCTTCCGAAAAGTGTA
CAGTTTGACCATCCTGGAAATATGTTGCTTTTCATTGTTTTCTGTGTATTAAAGGTGAAC
TGCAAAGTTAAAAAAAAAAAAAATGTAGGGGCAGGTATAAGTACACACTAAACATAGTCT
AATATCCACTGAACACAAATTTTAGCTTTCTCACTGCTACCGTTTAATCGCTACTGAATT
CAGAAAGGTCCCCTTTCCCACCTAGAACACAGTGACTAAAAGCGTTAAGGGCATATACGC
TGTTGCCGTGGGAACTCGTGGATGCCACTGTGCGGGTCTTTCCTTCGCTGGCCATGAAGG
TCCAGAGTCATCACGATGTCCTTACGTTGATCAGCAGGCCAAAAAAAAAAAAACAAAACA
AAACAAAGAGGAAACGGAAAAAAAAAAAAAGAAACCATTTGATGAGGGGCTAGGGATTCA
GGTTTCGCACAGTCTGTTTCCGAACAACGAAAAGAGAGAACTATATACATACGGTGCATA
TGTCCTTTTCTTTGACCTCTGCCACCACCTGCCTTTTAGAAGTTTGCCGAGTGAAGAGGC
CATGGCCTCTCATGCTGTTCCCATGACAGAACTGTAGCTTTTCTACTCTGCAAAGGCCTG
TGAGCAGAATGGCTGGCCTGCTGTGAGCAAGAGAGGAGAGTCTAAGAAGGGTAGTCCCCC
TACAACATACGAGGCTCCCGCTGGGTTTTCCTGGGCCGGACAGCTTTTCCTGACCCCAGG
AGCCCAGAGGTGGCAGGTCGCTCGTGAAAATATGCTTTGTGATGTCCAGCTTCAGTGCTG
AGAGGGCAGCCTTAAAGCGACAGCATCCTGCCTGACTCTTCCCGAGGACACCTGTGACAC
GCCCTCGGCCATCACAGTGGCCTTTGCGAGCAGGATCCCTGTCCTGAAGAGAGGCTGGGC
TGACCCTGCTCCGCTTTGCACCTTTCTCATTAGGGGAACTTCAGAGCCGGGCTTGGAGCA
ATTGTTTGAAAACGCAGTCGGCTCAGACTCTTCATAACGCCTGCACATAGATGCTGTGGC
TGAGATGGAAACTTAACAGACGTTTTTAAAAAGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGATTCTCAGACAAGGCTTGCGGATGCCCCGCGGCCATCATTTAACTGCGCCCGCAGAG
CAGTTACGGTTTGTCACTCGACCCTCCCGGATCGCCTCGTTTGTCCCTAGTGAGACCCCG
AGGCTCTGCCCGCGCCGGGCTTCTCAATAGCTGGATGCATGTCGTGCTCTGGGCAGCGCG
GGCGCAGGGCACGCGTTCGCGCACACCCGCGCACACACGAAAACGCGCAAGACTAATTTT
CTGGAGTTTCTGCCCCTGCTCTGCGTCAGCCCTCACGTCACTTCGCCAGCAGTAGCAGAG
GCGGCGGCGGCGGCGGCGGCGGCGGCTCCCGGAATTGGGTTGGAGCAGGAGCCTCGCTCG
CTCCTTAGCTCGCGCTCTCCGAGCTCCGTGCCCAGCGGCAGGAGGAGCCTGGACCCAGGC
GCCGCTGGCGGGCGGTAGGCGCCGGAGCCCGGCCCCGAGGTGCGTCCCGGATCCCAGTGC
GCGTCTAGGAAGGAGCCTGCGTCCCAGAGCGTCCCAGGAGCGCGGCCGCCCGGTGCTCGG
CTCCCCGGCCATGCAGCGGCGGCCGAGGCGCAGCTCCCAGAGACGGTAGCGCCCCCTGTG
AGGAGGCCCGAAATGCCCCTGCCACTGTGAACCCGCCAGGACGCGCTCAGCTCCGGACAC
GCTCGGCTCTGCGCGCCTGCGAGGAGCACCGAGTGGAGAGAGAGCGGCAGGCGCAGCAAA
GGCCGCCCAGCACCGGCAGGGGAGGCCGGCCGGTGCGGTTCAGGGACACGTACTCAGTCT
GACTCGAGCTGGCACTGGTGGCTAGGAATGTCGTCCTGGACGAGGTGGCATGGGCCTGCC
ATGGCGCGGCTCTGGGGCTTCTGCTGGCTGATTGTGGGCTTCTGGAGGGCCGCTCTTGCC
TGTCCCACATCCTGCAAATGCAGCGCCTCTCGGATCTGGTGCAGCGACCCTTCTCCTGGC
ATCGTGGCATTCCCGAGGTTGGAGCCTTCCACTGCAGACCCTGAGAACATCACCGAAATT
TATATTGCAAATCAGAAAAGATTAGAAATCATCAATGAAGATGATGTTGAAGCTTATGCA
GGACTGAAAAATCTGACCATTGTGGATTCCGGATTAAAATCTGTGGCTCATAAAGCATTT
CTGAAAAATAGCAACTTACAGCACATCAATTTTACCCGAAATAAACTGACGATTTTGTCT
AGGAAACATTTTCGTCACCTTGATTTGTCTGAGCTGATCCTGGTGGGCAATCCATTTAGA
TGCTCCTGTGACATTATGTGGATCAAGACTCTTCAGGAAACTAAGCCCAGTCTAGAAACT
CAGGATTTGTACTGCCTGGATGAAAACAGCAAGAATATTTCCCTGGCAAACCTGCAGATA
CCCAATTGTGGTTTGCCGTCAGCAAATTTGGCTGCCCCAAACCTCACCGTGGAGGAGGGA
AAGTCTATCACGCTATCTTGTAGTGTTGCAGGTGATCCAGTTCCGAATTTGTACTGGGAT
GTCGGTAATCTGGTTTCCAAGCACATGAATGAAACAAGCTACACACAGGGCTCCTTAAGG
ATAACTAACATTTCATCTGATGACAGTGGAAAGCAAATCTCTTGTGTGGCAGAAAATCTC
GTAGGAGAAGATCAAGATTCTGTCAACCTCACTGTACATTTTGCTCCAACTATCACATTT
CTCGAATCTCCAACCTCAGACCACCACTGGTGCATTCCATTCACTGTGAAAGGCAACCCC
AAACCAGCGCTTCAGTGGTTCTATAACGGGGCAATTTTGAATGAGTCCAAATACATCTGT
ACTAAAATCCATGTTACCAATCACACGGAGTACCACGGCTGCCTCCAGCTGGATAATCCT
ACTCACATGAACAATGGGGACTACAAGTTAGTGGCCAAGAATGAGTATGGGAAGGATGAG
AAACAGATTTCTGCTCACTTCATGGGCTGGCCTGGAATCGATGACGGTGCAAACCCAAAT
TATCCTGATGTAATTTATGAAGATTATGGGACTGCAGCGAATGATATTGGGGACACCACC
AACAGAAGCAATGAAATCCCTTCCACAGATGTTGCTGACAAAACTGGTCGAGAACATCTC
TCGGTCTACGCTGTGGTAGTAATTGCATCGGTAGTGGGGTTTTGTCTGCTGGTAATGCTG
TTTCTGCTGAAGTTGGCAAGACACTCCAAGTTTGGCATGAAAGGTTTTGTTTTGTTTCAT
AAGATCCCACTGGATGGGTAACTGAAATAAAGGAAAAGACAGAGAAGGGGGCTGTGGTGC
TTGTTGGTTGATGCTGCCTTGTAAGCTGGACTCTTGGGGCTGGCGTGGTTTCTCCCGCCC
GGGACAGGCCATTTCTCTGGGGTTTTCTGCTAGAGGTGGGTGGTGTTTGCAGGAGGTACT
GCTCGAAGCCTGCAGGTGCTGTGAGCTGTGAACAGGGGCCACCAAGGCAGACTCAGCTCA
CAGGCAGCTAAGCAGAAACTCAAGAAAACATTTTAATACTTCTCTTTTGATCTTACAATC
GTTCACATGCAAAGTTGAAATGAAATGCCACCGGATTGTGTTTCTCTTCCGAAAAGTGTA
CAGTTTGACCATCCTGGAAATATGTTGCTTTTCATTGTTTTCTGTGTATTAAAGGTGAAC
TGCAAAGTTAAAAAAAAAAAAAATGTAGGGGCAGGTATAAGTACACACTAAACATAGTCT
AATATCCACTGAACACAAATTTTAGCTTTCTCACTGCTACCGTTTAATCGCTACTGAATT
CAGAAAGGTCCCCTTTCCCACCTAGAACACAGTGACTAAAAGCGTTAAGGGCATATACGC
TGTTGCCGTGGGAACTCGTGGATGCCACTGTGCGGGTCTTTCCTTCGCTGGCCATGAAGG
TCCAGAGTCATCACGATGTCCTTACGTTGATCAGCAGGCCAAAAAAAAAAAAACAAAACA
AAACAAAGAGGAAACGGAAAAAAAAAAAAAGAAACCATTTGATGAGGGGCTAGGGATTCA
GGTTTCGCACAGTCTGTTTCCGAACAACGAAAAGAGAGAACTATATACATACGGTGCATA
TGTCCTTTTCTTTGACCTCTGCCACCACCTGCCTTTTAGAAGTTTGCCGAGTGAAGAGGC
CATGGCCTCTCATGCTGTTCCCATGACAGAACTGTAGCTTTTCTACTCTGCAAAGGCCTG
TGAGCAGAATGGCTGGCCTGCTGTGAGCAAGAGAGGAGAGTCTAAGAAGGGTAGTCCCCC
TACAACATACGAGGCTCCCGCTGGGTTTTCCTGGGCCGGACAGCTTTTCCTGACCCCAGG
AGCCCAGAGGTGGCAGGTCGCTCGTGAAAATATGCTTTGTGATGTCCAGCTTCAGTGCTG
AGAGGGCAGCCTTAAAGCGACAGCATCCTGCCTGACTCTTCCCGAGGACACCTGTGACAC
GCCCTCGGCCATCACAGTGGCCTTTGCGAGCAGGATCCCTGTCCTGAAGAGAGGCTGGGC
TGACCCTGCTCCGCTTTGCACCTTTCTCATTAGGGGAACTTCAGAGCCGGGCTTGGAGCA
ATTGTTTGAAAACGCAGTCGGCTCAGACTCTTCATAACGCCTGCACATAGATGCTGTGGC
TGAGATGGAAACTTAACAGACGTTTTTAAAAAGCCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|21594337|gb|AAH31835.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21594337|gb|AAH31835.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               3114-3312, - strand, RNAz p=0.748458

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3114-3312, - strand, RNAz p=0.748458

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2202-3635, gnl|bosTau2|chr8 (43074797-43076234)
               

               
               2202-3635, gnl|Hg17|chr9 (84655009-84656529)
               

               
               2202-3635, gnl|Mm7|chr13 (58026695-58028300)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2202-3635, gnl|bosTau2|chr8 (43074797-43076234)
               

               
               2202-3635, gnl|Hg17|chr9 (84655009-84656529)
               

               
               2202-3635, gnl|Mm7|chr13 (58026695-58028300)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               aor (0.390549)
               

               
               fat (0.294855)
               

               
               hlv (0.278513)
               

               
               pla (0.267344)
               

               
               cmu (0.186393)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.390549)
               

               
               fat (0.294855)
               

               
               hlv (0.278513)
               

               
               pla (0.267344)
               

               
               cmu (0.186393)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               cbr (0.127975)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	2202-3635, gnl\|bosTau2\|chr8 (43074797-43076234)
	2202-3635, gnl\|Hg17\|chr9 (84655009-84656529)
	2202-3635, gnl\|Mm7\|chr13 (58026695-58028300)

	aor (0.390549)
	fat (0.294855)
	hlv (0.278513)
	pla (0.267344)
	cmu (0.186393)
	ute (0.132784)
	ret (0.128733)
	cbr (0.127975)
	eru (0.120048)
	ebs (0.118301)
	spc (0.113366)
	cty (0.10408)