Non-Coding RNA Search

Ss1.1-Tra1-TCH01D100082.5

Sequence:


               
               CTAGGCCGCCGAGAGCCTGCCGGCTAGTACACGTACGCGCGCCGGAGTCGGCCCTCCTAG
ACACGTGACTCCCGACTCCACGCTTCCTCTGCTTCAGCAGCTACTGCCAGAATAAGGCGT
TATGGCTTCCGCCATTCCCCACGCTGCTTGTCTCTCTCCACTCTTTCCCCTTCTCCTGTT
CCTCCTGTTTCTCTCTGCTCCGCAAGGCGGCAGCGGCCTGCACACCAAGGGCGCCCTTCC
CCTGGATACAATTACTTTCTACAAGGTCATTCCCAAAAGCAAGTTTGTCTTGGTGAAGTT
TGACACCCAGTATCCCTATGGTGAGAAGCAGGATGAGTTCAAGCGTCTGGCTGAAAACTC
AGCTTCCAGCGATGATCTCTTGGTGGCAGAAGTGGGGATCTCAGATTACGGTGACAAGCT
GAATATGGAGCTGAGTGAGAAATACAAGCTGGACAAAGAGAACTACCCGGTCTTCTACCT
CTTCCGGGATGGGGACTTTGAGAACCCAATCCTATATAGTGGGGCAGTTAAAGTTGGAGC
CATCCAGCGCTGGCTAAAGGGACATGGGATCTACCTAGGTATGCCTGGTTGCCTGCCTGC
ATATGACACCCTTGCTGGGGAGTTCATCAGGGCCTCTGGGGTGGAAGCCCGCCAGGCCCT
CTTGAGGCAGGGGCAGGACAACCTCAAAAGTGTGAAGGAGACTGAGAAGAAGTGGGCAGA
GCAGTACCTTAAGATCATGGGAAAGATCTTAGACCAAGGTGAGGACTTCCCAGCATCAGA
GATGACCCGAATCACCAAGCTGATTGAGAAGAACAAGATGAGCAGTGGGAAGAAGGAAGA
GCTCCAGAGGAGCTTAAACATCTTGACTGCCTTCCAGAAGAAGGGGGCTGAGAAGGAGGA
GCTGTGATAAAGCACACTAGGGTTTGGTGGGAGTGGGAGGGCTCAGTTACCTGCTGGCTG
TGAGACCCACCTGGGATATAATGGAGTGCTAGGAAAAGTGGCACTAAACAAATCTGAATG
TGCCTGGGTACCGATGCTGTTGTGATCACACTTGGGACATCTCTGTAACCAGTCAGGTAT
AGCTGAAGCAGTTACTCAGATGGCTTGTGAAATCCACACTCAGAGGGAATTGGTGCTATA
AAGAAGAGTATACTGCCCAGGTTCTTGACAGGTATAATTCTGATCCAATTAAAGTTTCTG
TGTTTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAGGCCGCCGAGAGCCTGCCGGCTAGTACACGTACGCGCGCCGGAGTCGGCCCTCCTAG
ACACGTGACTCCCGACTCCACGCTTCCTCTGCTTCAGCAGCTACTGCCAGAATAAGGCGT
TATGGCTTCCGCCATTCCCCACGCTGCTTGTCTCTCTCCACTCTTTCCCCTTCTCCTGTT
CCTCCTGTTTCTCTCTGCTCCGCAAGGCGGCAGCGGCCTGCACACCAAGGGCGCCCTTCC
CCTGGATACAATTACTTTCTACAAGGTCATTCCCAAAAGCAAGTTTGTCTTGGTGAAGTT
TGACACCCAGTATCCCTATGGTGAGAAGCAGGATGAGTTCAAGCGTCTGGCTGAAAACTC
AGCTTCCAGCGATGATCTCTTGGTGGCAGAAGTGGGGATCTCAGATTACGGTGACAAGCT
GAATATGGAGCTGAGTGAGAAATACAAGCTGGACAAAGAGAACTACCCGGTCTTCTACCT
CTTCCGGGATGGGGACTTTGAGAACCCAATCCTATATAGTGGGGCAGTTAAAGTTGGAGC
CATCCAGCGCTGGCTAAAGGGACATGGGATCTACCTAGGTATGCCTGGTTGCCTGCCTGC
ATATGACACCCTTGCTGGGGAGTTCATCAGGGCCTCTGGGGTGGAAGCCCGCCAGGCCCT
CTTGAGGCAGGGGCAGGACAACCTCAAAAGTGTGAAGGAGACTGAGAAGAAGTGGGCAGA
GCAGTACCTTAAGATCATGGGAAAGATCTTAGACCAAGGTGAGGACTTCCCAGCATCAGA
GATGACCCGAATCACCAAGCTGATTGAGAAGAACAAGATGAGCAGTGGGAAGAAGGAAGA
GCTCCAGAGGAGCTTAAACATCTTGACTGCCTTCCAGAAGAAGGGGGCTGAGAAGGAGGA
GCTGTGATAAAGCACACTAGGGTTTGGTGGGAGTGGGAGGGCTCAGTTACCTGCTGGCTG
TGAGACCCACCTGGGATATAATGGAGTGCTAGGAAAAGTGGCACTAAACAAATCTGAATG
TGCCTGGGTACCGATGCTGTTGTGATCACACTTGGGACATCTCTGTAACCAGTCAGGTAT
AGCTGAAGCAGTTACTCAGATGGCTTGTGAAATCCACACTCAGAGGGAATTGGTGCTATA
AAGAAGAGTATACTGCCCAGGTTCTTGACAGGTATAATTCTGATCCAATTAAAGTTTCTG
TGTTTTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|11513363|pdb|1G7E|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|11513363|pdb|1G7E|A

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               558-757, - strand, RNAz p=0.926968
               

               
               798-946, + strand, RNAz p=0.903977

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               558-757, - strand, RNAz p=0.926968
               

               
               798-946, + strand, RNAz p=0.903977

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_006817, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_006817, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-267, gnl|bosTau2|chr17 (36841741-36842008)
               

               
               1-267, gnl|Hg17|chr12 (110913860-110914135)
               

               
               1-267, gnl|Mm7|chr5 (120686475-120686175)
               


               
               399-1212, gnl|bosTau2|chr17 (36848383-36849198)
               

               
               399-1212, gnl|Hg17|chr12 (110922668-110923509)
               

               
               399-1212, gnl|Mm7|chr5 (120679564-120678738)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-267, gnl|bosTau2|chr17 (36841741-36842008)
               

               
               1-267, gnl|Hg17|chr12 (110913860-110914135)
               

               
               1-267, gnl|Mm7|chr5 (120686475-120686175)
               


               
               399-1212, gnl|bosTau2|chr17 (36848383-36849198)
               

               
               399-1212, gnl|Hg17|chr12 (110922668-110923509)
               

               
               399-1212, gnl|Mm7|chr5 (120679564-120678738)

Expressed library(ies): 40 entry(ies)

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Expressed library(ies): 40 entry(ies)

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               cje (0.826173)
               

               
               nca (0.821243)
               

               
               cut (0.509771)
               

               
               nco (0.485201)
               

               
               clu (0.478583)
               

               
               cst (0.420109)
               

               
               col (0.390016)
               

               
               nlu (0.383362)
               

               
               pgl (0.35545)
               

               
               duo (0.345602)
               

               
               nje (0.33184)
               

               
               csp (0.322373)
               

               
               cty (0.31224)
               

               
               eje (0.296501)
               

               
               hyp (0.285673)
               

               
               pty (0.285429)
               

               
               nmm (0.265604)
               

               
               cov (0.264306)
               

               
               cly (0.241284)
               

               
               cbe (0.239234)
               

               
               pan (0.23596)
               

               
               jca (0.22792)
               

               
               mas (0.210305)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

Expressed library(ies): 40 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.826173)
               

               
               nca (0.821243)
               

               
               cut (0.509771)
               

               
               nco (0.485201)
               

               
               clu (0.478583)
               

               
               cst (0.420109)
               

               
               col (0.390016)
               

               
               nlu (0.383362)
               

               
               pgl (0.35545)
               

               
               duo (0.345602)
               

               
               nje (0.33184)
               

               
               csp (0.322373)
               

               
               cty (0.31224)
               

               
               eje (0.296501)
               

               
               hyp (0.285673)
               

               
               pty (0.285429)
               

               
               nmm (0.265604)
               

               
               cov (0.264306)
               

               
               cly (0.241284)
               

               
               cbe (0.239234)
               

               
               pan (0.23596)
               

               
               jca (0.22792)
               

               
               mas (0.210305)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

	558-757, - strand, RNAz p=0.926968
	798-946, + strand, RNAz p=0.903977

	1-267, gnl\|bosTau2\|chr17 (36841741-36842008)
	1-267, gnl\|Hg17\|chr12 (110913860-110914135)
	1-267, gnl\|Mm7\|chr5 (120686475-120686175)

	399-1212, gnl\|bosTau2\|chr17 (36848383-36849198)
	399-1212, gnl\|Hg17\|chr12 (110922668-110923509)
	399-1212, gnl\|Mm7\|chr5 (120679564-120678738)

	cje (0.826173)
	nca (0.821243)
	cut (0.509771)
	nco (0.485201)
	clu (0.478583)
	cst (0.420109)
	col (0.390016)
	nlu (0.383362)
	pgl (0.35545)
	duo (0.345602)
	nje (0.33184)
	csp (0.322373)
	cty (0.31224)
	eje (0.296501)
	hyp (0.285673)
	pty (0.285429)
	nmm (0.265604)
	cov (0.264306)
	cly (0.241284)
	cbe (0.239234)
	pan (0.23596)
	jca (0.22792)
	mas (0.210305)
	aor (0.195274)
	mgm (0.180343)
	ton (0.1755)
	fbs (0.175346)
	mcp (0.170648)
	eye (0.170503)
	cki (0.165235)
	cli (0.152812)
	cag (0.151194)
	lin (0.145603)
	lnt (0.142308)
	hlv (0.139256)
	che (0.136314)
	lyg (0.133103)
	kid (0.129735)
	eep (0.122564)
	ebs (0.118301)