Ss1.1-Tra1-TCH01D110003.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCTAAACAGCTGTTTAAAAAACCTCATCCGCCCAAGCGCGTGAGGAGTCGACTCAACGG AGACAACGCGGGCATCTCGGTCCCACCAGGATGTACGAGTGACAAGATCTTTTTTCATCA TCTAGACAACTTGAGGCCTTCTCTCACACCTGTAAAAGAACTCAAAGAGCCCGTGGGACA GATAGTGTGTACGGATAAAGGCATCCTTGCCGTGGAACAGAATAAGGTTCTCATCCCACC AACTTGGAACAAGACTTTTGCCTGGGGCTACGCAGACCTCAGCTGCAGGCTGGGAACCTA CGAGTCAGACAAGGCAGTGACCGTGTATGAGTGTTTGTCCGAGTGGGGCCAGATCCTCTG TGCCATCTGCCCCAACCCCAAGCTGGTCATCACGGGCGGAACAAGCACCGTCGTGTGTGT GTGGGAGATGGGCACCTCCAAGGAAAAGGCCAGGACGCTCACCCTCAAGCAGGCCTTGCT TGGCCACACGGATACTGTCACCTGTGCCACCGCGTCATTAGCCTATCACATAATCGTCAG TGGATCCCGCGACCGAACCTGCATCATTTGGGATCTGAACAAACTGTCGTTCCTGACCCA GCTCCGAGGCCACCGGGCTCCCGTTTCTGCTCTTTGTATCAATGAATTAACAGGGGACAT CGTGTCCTGCGCCGGCACGCACATCCACGTGTGGAGCATCAACGGGAACCCCGTCGTGAG CGTGAACACGTTCACGGGCCGGAGCCAGCAGATCGTGTGCTGCTGCGTGTCGGAGATGAA CGAGTGGGACACACAGAACGTCATCGTCACGGGGCACTCGGACGGAGTGGTCCGGTTTTG GAGAATGGAATTTTTGCAAGTTCCTGAAACACCAGCTCCTGAGCCTGTTGAAGTGCTAGA AATGCAGGAAGACTGTCCAGAGGCACAAATAGGGCAAGAAGCCCAGGACGAGGACAGCAG CGATTCCGAGGCGGAGGAGCAGAGCATCAGCCAGGACCCCAAGGACACGCCCAGCCAGCC CAGCAGCACCAGCCACAGGCCCCGGGCGGCCTCTTGCCGAGCCACGGCCACCTGGTGCAA TGACAGCGGCTCCGACGACTCCAGGCGCTGGTCCGACCAGCTGAGCCTCGATGAGAGGGA CGGCTTCATACTTGTGAACTATTCGGAGGGCCGGGCCCGGGCTCATCTGCAGCCCCCCCT TAACCACCCCCACCCCAGCCCTGTCGAAGTGCGGAACTACAACAGATTGAAGCCTGGGTA CCGGTGGGAACGGCAGCTGGTGTTCAGGAGCAAGCTGACCATGCACACGGCCTTTGACCG GAAGGACAATGCACACCCGGCCGAGATCACCGCCCTGGGCGTCTCCAAGGACCACAGTCG GATCCTCGTGGGTGACAGTCGAGGCCGGGTCTTCAGCTGGTCTGTGAGTGACCAGCCGGG CCGCTCTGCCGCCGACCATTGGGTGAAGGACGAAGGAGGGGACAGCTGCTCGGGCTGCTC AGTGCGGTTCTCTCTCACAGAGAGGCGGCACCATTGCAGGAACTGCGGTCAGCTCTTCTG CCAGAAGTGCAGCCGATTTCAGTCCGAAATCAAACGCTTGAAAATCTCATCCCCGGTCCG CGTTTGTCAGAACTGCTACTACAATTTGCAGCACGAGAGGGGTTCAGAAGATGCGCCTCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCTAAACAGCTGTTTAAAAAACCTCATCCGCCCAAGCGCGTGAGGAGTCGACTCAACGG AGACAACGCGGGCATCTCGGTCCCACCAGGATGTACGAGTGACAAGATCTTTTTTCATCA TCTAGACAACTTGAGGCCTTCTCTCACACCTGTAAAAGAACTCAAAGAGCCCGTGGGACA GATAGTGTGTACGGATAAAGGCATCCTTGCCGTGGAACAGAATAAGGTTCTCATCCCACC AACTTGGAACAAGACTTTTGCCTGGGGCTACGCAGACCTCAGCTGCAGGCTGGGAACCTA CGAGTCAGACAAGGCAGTGACCGTGTATGAGTGTTTGTCCGAGTGGGGCCAGATCCTCTG TGCCATCTGCCCCAACCCCAAGCTGGTCATCACGGGCGGAACAAGCACCGTCGTGTGTGT GTGGGAGATGGGCACCTCCAAGGAAAAGGCCAGGACGCTCACCCTCAAGCAGGCCTTGCT TGGCCACACGGATACTGTCACCTGTGCCACCGCGTCATTAGCCTATCACATAATCGTCAG TGGATCCCGCGACCGAACCTGCATCATTTGGGATCTGAACAAACTGTCGTTCCTGACCCA GCTCCGAGGCCACCGGGCTCCCGTTTCTGCTCTTTGTATCAATGAATTAACAGGGGACAT CGTGTCCTGCGCCGGCACGCACATCCACGTGTGGAGCATCAACGGGAACCCCGTCGTGAG CGTGAACACGTTCACGGGCCGGAGCCAGCAGATCGTGTGCTGCTGCGTGTCGGAGATGAA CGAGTGGGACACACAGAACGTCATCGTCACGGGGCACTCGGACGGAGTGGTCCGGTTTTG GAGAATGGAATTTTTGCAAGTTCCTGAAACACCAGCTCCTGAGCCTGTTGAAGTGCTAGA AATGCAGGAAGACTGTCCAGAGGCACAAATAGGGCAAGAAGCCCAGGACGAGGACAGCAG CGATTCCGAGGCGGAGGAGCAGAGCATCAGCCAGGACCCCAAGGACACGCCCAGCCAGCC CAGCAGCACCAGCCACAGGCCCCGGGCGGCCTCTTGCCGAGCCACGGCCACCTGGTGCAA TGACAGCGGCTCCGACGACTCCAGGCGCTGGTCCGACCAGCTGAGCCTCGATGAGAGGGA CGGCTTCATACTTGTGAACTATTCGGAGGGCCGGGCCCGGGCTCATCTGCAGCCCCCCCT TAACCACCCCCACCCCAGCCCTGTCGAAGTGCGGAACTACAACAGATTGAAGCCTGGGTA CCGGTGGGAACGGCAGCTGGTGTTCAGGAGCAAGCTGACCATGCACACGGCCTTTGACCG GAAGGACAATGCACACCCGGCCGAGATCACCGCCCTGGGCGTCTCCAAGGACCACAGTCG GATCCTCGTGGGTGACAGTCGAGGCCGGGTCTTCAGCTGGTCTGTGAGTGACCAGCCGGG CCGCTCTGCCGCCGACCATTGGGTGAAGGACGAAGGAGGGGACAGCTGCTCGGGCTGCTC AGTGCGGTTCTCTCTCACAGAGAGGCGGCACCATTGCAGGAACTGCGGTCAGCTCTTCTG CCAGAAGTGCAGCCGATTTCAGTCCGAAATCAAACGCTTGAAAATCTCATCCCCGGTCCG CGTTTGTCAGAACTGCTACTACAATTTGCAGCACGAGAGGGGTTCAGAAGATGCGCCTCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 653-1452, + strand, RNAz p=0.834819 | |
| 653-1452, - strand, RNAz p=0.834819 | |
| 653-1568, + strand, RNAz p=0.788067 | |
| 653-1568, - strand, RNAz p=0.788067 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 653-1452, + strand, RNAz p=0.834819 | |
| 653-1452, - strand, RNAz p=0.834819 | |
| 653-1568, + strand, RNAz p=0.788067 | |
| 653-1568, - strand, RNAz p=0.788067 |
| Aligned organism(s): 76 entry(ies) | More info |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
| 157-314, gnl|bosTau2|chr6 (57974440-57974597) | |
| 157-314, gnl|canFam2|chr32 (11411795-11411984) | |
| 157-314, gnl|danRer3|chr5 (35465303-35465130) | |
| 157-314, gnl|dasNov1|scaffold_1533 (44728-44915) | |
| 157-314, gnl|echTel1|scaffold_199247 (1175-998) | |
| 157-314, gnl|fr1|chrUn (245447270-245447093) | |
| 157-314, gnl|galGal2|chr4 (47554245-47554060) | |
| 157-314, gnl|hg17|chr4 (85969962-85970140) | |
| 157-314, gnl|Hg17|chr4 (85970119-85969962) | |
| 157-314, gnl|loxAfr1|scaffold_1559 (37446-37266) | |
| 157-314, gnl|mm7|chr5 (101040585-101040760) | |
| 157-314, gnl|Mm7|chr5 (101040742-101040585) | |
| 157-314, gnl|monDom2|scaffold_37 (18705155-18705333) | |
| 157-314, gnl|panTro1|chr3 (47710372-47710194) | |
| 157-314, gnl|rheMac2|chr5 (44830547-44830369) | |
| 157-314, gnl|rn3|chr14 (9047649-9047474) | |
| 157-314, gnl|tetNig1|chr12 (3552167-3552341) | |
| 157-314, gnl|xenTro1|scaffold_304 (761898-762075) | |
| 471-612, gnl|bosTau2|chr6 (57977636-57977777) | |
| 471-612, gnl|canFam2|chr32 (11407506-11407684) | |
| 471-612, gnl|danRer3|chr5 (35468123-35467966) | |
| 471-612, gnl|dasNov1|scaffold_1533 (41480-41657) | |
| 471-612, gnl|echTel1|scaffold_199247 (5117-4944) | |
| 471-612, gnl|fr1|chrUn (174193529-174193342) | |
| 471-612, gnl|galGal2|chr4 (47556452-47556289) | |
| 471-612, gnl|hg17|chr4 (85966459-85966641) | |
| 471-612, gnl|Hg17|chr4 (85966599-85966458) | |
| 471-612, gnl|loxAfr1|scaffold_1559 (41558-41380) | |
| 471-612, gnl|mm7|chr5 (101037673-101037852) | |
| 471-612, gnl|Mm7|chr5 (101037813-101037672) | |
| 471-612, gnl|monDom2|scaffold_37 (18701057-18701239) | |
| 471-612, gnl|oryCun1|scaffold_116840 (10129-9956) | |
| 471-612, gnl|panTro1|chr3 (47713874-47713692) | |
| 471-612, gnl|rheMac2|chr5 (44834045-44833863) | |
| 471-612, gnl|rn3|chr14 (9050743-9050564) | |
| 471-612, gnl|tetNig1|chr12 (3551410-3551590) | |
| 471-612, gnl|xenTro1|scaffold_304 (757055-757207) | |
| 653-835, gnl|bosTau2|chr6 (57982026-57982208) | |
| 653-835, gnl|canFam2|chr32 (11404073-11404283) | |
| 653-835, gnl|danRer3|chr5 (35470354-35470165) | |
| 653-835, gnl|dasNov1|scaffold_1533 (38380-38593) | |
| 653-835, gnl|echTel1|scaffold_269608 (6606-6819) | |
| 653-835, gnl|fr1|chrUn (174193853-174193658) | |
| 653-835, gnl|galGal2|chr4 (47558078-47557880) | |
| 653-835, gnl|hg17|chr4 (85962255-85962468) | |
| 653-835, gnl|Hg17|chr4 (85962457-85962275) | |
| 653-835, gnl|loxAfr1|scaffold_1559 (45418-45205) | |
| 653-835, gnl|mm7|chr5 (101036665-101036882) | |
| 653-835, gnl|Mm7|chr5 (101036868-101036686) | |
| 653-835, gnl|monDom2|scaffold_37 (18697647-18697847) | |
| 653-835, gnl|panTro1|chr3 (47718081-47717868) | |
| 653-835, gnl|rheMac2|chr5 (44837923-44837710) | |
| 653-835, gnl|rn3|chr14 (9051816-9051604) | |
| 653-835, gnl|tetNig1|chr12 (3551085-3551272) | |
| 653-835, gnl|xenTro1|scaffold_304 (753232-753451) | |
| 931-1257, gnl|bosTau2|chr6 (57987048-57987374) | |
| 931-1257, gnl|Hg17|chr4 (85957576-85957250) | |
| 931-1257, gnl|Mm7|chr5 (101033609-101033283) | |
| 1334-1568, gnl|bosTau2|chr6 (57988424-57988656) | |
| 1334-1568, gnl|canFam2|chr32 (11399179-11399400) | |
| 1334-1568, gnl|danRer3|chr5 (35478376-35478156) | |
| 1334-1568, gnl|echTel1|scaffold_269608 (806-1026) | |
| 1334-1568, gnl|fr1|chrUn (174195196-174194975) | |
| 1334-1568, gnl|galGal2|chr4 (47561696-47561475) | |
| 1334-1568, gnl|hg17|chr4 (85955527-85955748) | |
| 1334-1568, gnl|Hg17|chr4 (85955759-85955529) | |
| 1334-1568, gnl|loxAfr1|scaffold_8633 (49929-50149) | |
| 1334-1568, gnl|mm7|chr5 (101032376-101032597) | |
| 1334-1568, gnl|Mm7|chr5 (101032604-101032378) | |
| 1334-1568, gnl|monDom2|scaffold_37 (18692111-18692326) | |
| 1334-1568, gnl|oryCun1|scaffold_211496 (124913-125134) | |
| 1334-1568, gnl|panTro1|chr3 (47724862-47724641) | |
| 1334-1568, gnl|rheMac2|chr5 (44844615-44844394) | |
| 1334-1568, gnl|rn3|chr14 (9056654-9056433) | |
| 1334-1568, gnl|tetNig1|chr12 (3549638-3549844) | |
| 1334-1568, gnl|xenTro1|scaffold_304 (750366-750595) |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 157-314, gnl|bosTau2|chr6 (57974440-57974597) | |
| 157-314, gnl|canFam2|chr32 (11411795-11411984) | |
| 157-314, gnl|danRer3|chr5 (35465303-35465130) | |
| 157-314, gnl|dasNov1|scaffold_1533 (44728-44915) | |
| 157-314, gnl|echTel1|scaffold_199247 (1175-998) | |
| 157-314, gnl|fr1|chrUn (245447270-245447093) | |
| 157-314, gnl|galGal2|chr4 (47554245-47554060) | |
| 157-314, gnl|hg17|chr4 (85969962-85970140) | |
| 157-314, gnl|Hg17|chr4 (85970119-85969962) | |
| 157-314, gnl|loxAfr1|scaffold_1559 (37446-37266) | |
| 157-314, gnl|mm7|chr5 (101040585-101040760) | |
| 157-314, gnl|Mm7|chr5 (101040742-101040585) | |
| 157-314, gnl|monDom2|scaffold_37 (18705155-18705333) | |
| 157-314, gnl|panTro1|chr3 (47710372-47710194) | |
| 157-314, gnl|rheMac2|chr5 (44830547-44830369) | |
| 157-314, gnl|rn3|chr14 (9047649-9047474) | |
| 157-314, gnl|tetNig1|chr12 (3552167-3552341) | |
| 157-314, gnl|xenTro1|scaffold_304 (761898-762075) | |
| 471-612, gnl|bosTau2|chr6 (57977636-57977777) | |
| 471-612, gnl|canFam2|chr32 (11407506-11407684) | |
| 471-612, gnl|danRer3|chr5 (35468123-35467966) | |
| 471-612, gnl|dasNov1|scaffold_1533 (41480-41657) | |
| 471-612, gnl|echTel1|scaffold_199247 (5117-4944) | |
| 471-612, gnl|fr1|chrUn (174193529-174193342) | |
| 471-612, gnl|galGal2|chr4 (47556452-47556289) | |
| 471-612, gnl|hg17|chr4 (85966459-85966641) | |
| 471-612, gnl|Hg17|chr4 (85966599-85966458) | |
| 471-612, gnl|loxAfr1|scaffold_1559 (41558-41380) | |
| 471-612, gnl|mm7|chr5 (101037673-101037852) | |
| 471-612, gnl|Mm7|chr5 (101037813-101037672) | |
| 471-612, gnl|monDom2|scaffold_37 (18701057-18701239) | |
| 471-612, gnl|oryCun1|scaffold_116840 (10129-9956) | |
| 471-612, gnl|panTro1|chr3 (47713874-47713692) | |
| 471-612, gnl|rheMac2|chr5 (44834045-44833863) | |
| 471-612, gnl|rn3|chr14 (9050743-9050564) | |
| 471-612, gnl|tetNig1|chr12 (3551410-3551590) | |
| 471-612, gnl|xenTro1|scaffold_304 (757055-757207) | |
| 653-835, gnl|bosTau2|chr6 (57982026-57982208) | |
| 653-835, gnl|canFam2|chr32 (11404073-11404283) | |
| 653-835, gnl|danRer3|chr5 (35470354-35470165) | |
| 653-835, gnl|dasNov1|scaffold_1533 (38380-38593) | |
| 653-835, gnl|echTel1|scaffold_269608 (6606-6819) | |
| 653-835, gnl|fr1|chrUn (174193853-174193658) | |
| 653-835, gnl|galGal2|chr4 (47558078-47557880) | |
| 653-835, gnl|hg17|chr4 (85962255-85962468) | |
| 653-835, gnl|Hg17|chr4 (85962457-85962275) | |
| 653-835, gnl|loxAfr1|scaffold_1559 (45418-45205) | |
| 653-835, gnl|mm7|chr5 (101036665-101036882) | |
| 653-835, gnl|Mm7|chr5 (101036868-101036686) | |
| 653-835, gnl|monDom2|scaffold_37 (18697647-18697847) | |
| 653-835, gnl|panTro1|chr3 (47718081-47717868) | |
| 653-835, gnl|rheMac2|chr5 (44837923-44837710) | |
| 653-835, gnl|rn3|chr14 (9051816-9051604) | |
| 653-835, gnl|tetNig1|chr12 (3551085-3551272) | |
| 653-835, gnl|xenTro1|scaffold_304 (753232-753451) | |
| 931-1257, gnl|bosTau2|chr6 (57987048-57987374) | |
| 931-1257, gnl|Hg17|chr4 (85957576-85957250) | |
| 931-1257, gnl|Mm7|chr5 (101033609-101033283) | |
| 1334-1568, gnl|bosTau2|chr6 (57988424-57988656) | |
| 1334-1568, gnl|canFam2|chr32 (11399179-11399400) | |
| 1334-1568, gnl|danRer3|chr5 (35478376-35478156) | |
| 1334-1568, gnl|echTel1|scaffold_269608 (806-1026) | |
| 1334-1568, gnl|fr1|chrUn (174195196-174194975) | |
| 1334-1568, gnl|galGal2|chr4 (47561696-47561475) | |
| 1334-1568, gnl|hg17|chr4 (85955527-85955748) | |
| 1334-1568, gnl|Hg17|chr4 (85955759-85955529) | |
| 1334-1568, gnl|loxAfr1|scaffold_8633 (49929-50149) | |
| 1334-1568, gnl|mm7|chr5 (101032376-101032597) | |
| 1334-1568, gnl|Mm7|chr5 (101032604-101032378) | |
| 1334-1568, gnl|monDom2|scaffold_37 (18692111-18692326) | |
| 1334-1568, gnl|oryCun1|scaffold_211496 (124913-125134) | |
| 1334-1568, gnl|panTro1|chr3 (47724862-47724641) | |
| 1334-1568, gnl|rheMac2|chr5 (44844615-44844394) | |
| 1334-1568, gnl|rn3|chr14 (9056654-9056433) | |
| 1334-1568, gnl|tetNig1|chr12 (3549638-3549844) | |
| 1334-1568, gnl|xenTro1|scaffold_304 (750366-750595) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ecc (0.23007) | |
| nep (0.183925) | |
| eru (0.120048) | |
| med (0.116252) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.23007) | |
| nep (0.183925) | |
| eru (0.120048) | |
| med (0.116252) |