Ss1.1-Tra1-TCH01D110008.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGAAGTAGGGAAGGCGCCAACCCGGGGGGCCCGATCGAGTTGGGACAGAACGAGGAGGAG GCGCAGGCAGGAGGCATGGCCGGATGTCGCGGCCCGTAGCCCTAAGCGCGGCGGGGGCGG CCGCGGCGGGGGCGGTGCTAGTGGCCGCCCTGCTCCTGTTGCGGCCTGAGGACGCAGGGC TGGGGGCCGGGTCCAGCATGGCCGAGACAGAAGCGCTGCCGAAGCTTCGGGAAGACTTCA GGATGCAGAATAAATCCGTCTTTATTCTGGGCGCCAGCGGGGAAACCGGCCGAGTGCTGC TGAAGGAAATCCTGGAACAGAGCCTATTTTCCAAAGTCACGCTCATTGGCCGGAGGAAGC TCACATTCGACGAGGAAGCTTATAAAAACGTGAATCAAGAAGTGGTGGACTTTGAAAAAT TGGATGACTACGCTTCTGCCTTTCAAGGTCATGAGGTTGGATTCTGTTGCCTGGGTACTA CCAGAAGAAAAGCTGGGGCGGAGGGATTTGTTCGTGTTGATCGAGATTACGTCCTCAAGT CTGCAGAGCTGGCCAAAGCTGGAGGGTGCAAACATTTCAACTTGCTGTCCGCTAAGGGAG CTGATAAGTCAAGCAACTTTTTATATCTGCAAGTCAAGGGAGAAGTGGAAGCTAGAATTG AAGAATTAAAATTTGATCGTTACTCCATATTTAGGCCAGGAGTTCTGTTATGTGATAGGC AAGAATCTCGCCCAGGTGAATGGTTGGTTAGGAAGTTCTTTGGCTCCTTACCAGAATCTT GGGCCAGCGGACACTCTGTGCCAGTGCTGACTTTGGTTAGAGCGATGCTGAACAACACAG TGAGACCAAGCGACCAGAAGAAGGAACTGCTGGAAAACAAGGCCATCCTTGACCTGGGAA AAGCTGATGGCTCTCTCAAGACATAACCATGCTGGAGAAATGCTTTTTATTGTAAAATTC AACACTTTGTACCTCATCGGTAATTTCAGGGTCTAAAAAAGTTAGCACGCCTTAACTGTA GTTTTACTATTCTTAGCCCCCCAGATCCAATCAAAAAATGATCGCACTCTGCATCAGCAT TTTAGAGGCTAGTTGTACATATGTAAACATCAACCAGGGATCCTTGCAAAAGTAGAGATC CAGCAGTTGCCTGGTGGTCTATAAAAAGGAATGACACATGTTATAGCAGGGGTGAACCTT GAAAACATCATGCTAAGTGAGAGAGGCCAGTTCCCAAAGGCCACAACTAAGATGATTTTA TTTAGCATTGCATGGAAAAGTAAGAGATTCATAGGTCCTATCTCAAACTTTCTGAATCAT AATTTTTGGGGTATGGGTACAGAAATCTGTTGTTTTGTATTTTTGGGGTTTGGGCACAAA AATCTGTTTTTTTGTTTAAGCTTCTTATGGCTCTGATGCCACCAGTGGGGAGGCAAGTGA AACGCTTGTCTGCAGAGTCCCAGCAGCAATGCAGACTTTATGTATCATGCAGTTGAGTTC TGAACACTCGTTGCTGGCATTTGTGTCTCTGAGTTACCCAGTGCTGGCTGCATGTGACTG TGTAAGTGAAAACTGTGCCTTACTACTTCTTTAGAATGTGTAATGAAAGTTATGTGTAAG TGAGCTTATATGTTTCATGGGAGAATTAAATAGAGGAATAAAAATAAATGGAGAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGAAGTAGGGAAGGCGCCAACCCGGGGGGCCCGATCGAGTTGGGACAGAACGAGGAGGAG GCGCAGGCAGGAGGCATGGCCGGATGTCGCGGCCCGTAGCCCTAAGCGCGGCGGGGGCGG CCGCGGCGGGGGCGGTGCTAGTGGCCGCCCTGCTCCTGTTGCGGCCTGAGGACGCAGGGC TGGGGGCCGGGTCCAGCATGGCCGAGACAGAAGCGCTGCCGAAGCTTCGGGAAGACTTCA GGATGCAGAATAAATCCGTCTTTATTCTGGGCGCCAGCGGGGAAACCGGCCGAGTGCTGC TGAAGGAAATCCTGGAACAGAGCCTATTTTCCAAAGTCACGCTCATTGGCCGGAGGAAGC TCACATTCGACGAGGAAGCTTATAAAAACGTGAATCAAGAAGTGGTGGACTTTGAAAAAT TGGATGACTACGCTTCTGCCTTTCAAGGTCATGAGGTTGGATTCTGTTGCCTGGGTACTA CCAGAAGAAAAGCTGGGGCGGAGGGATTTGTTCGTGTTGATCGAGATTACGTCCTCAAGT CTGCAGAGCTGGCCAAAGCTGGAGGGTGCAAACATTTCAACTTGCTGTCCGCTAAGGGAG CTGATAAGTCAAGCAACTTTTTATATCTGCAAGTCAAGGGAGAAGTGGAAGCTAGAATTG AAGAATTAAAATTTGATCGTTACTCCATATTTAGGCCAGGAGTTCTGTTATGTGATAGGC AAGAATCTCGCCCAGGTGAATGGTTGGTTAGGAAGTTCTTTGGCTCCTTACCAGAATCTT GGGCCAGCGGACACTCTGTGCCAGTGCTGACTTTGGTTAGAGCGATGCTGAACAACACAG TGAGACCAAGCGACCAGAAGAAGGAACTGCTGGAAAACAAGGCCATCCTTGACCTGGGAA AAGCTGATGGCTCTCTCAAGACATAACCATGCTGGAGAAATGCTTTTTATTGTAAAATTC AACACTTTGTACCTCATCGGTAATTTCAGGGTCTAAAAAAGTTAGCACGCCTTAACTGTA GTTTTACTATTCTTAGCCCCCCAGATCCAATCAAAAAATGATCGCACTCTGCATCAGCAT TTTAGAGGCTAGTTGTACATATGTAAACATCAACCAGGGATCCTTGCAAAAGTAGAGATC CAGCAGTTGCCTGGTGGTCTATAAAAAGGAATGACACATGTTATAGCAGGGGTGAACCTT GAAAACATCATGCTAAGTGAGAGAGGCCAGTTCCCAAAGGCCACAACTAAGATGATTTTA TTTAGCATTGCATGGAAAAGTAAGAGATTCATAGGTCCTATCTCAAACTTTCTGAATCAT AATTTTTGGGGTATGGGTACAGAAATCTGTTGTTTTGTATTTTTGGGGTTTGGGCACAAA AATCTGTTTTTTTGTTTAAGCTTCTTATGGCTCTGATGCCACCAGTGGGGAGGCAAGTGA AACGCTTGTCTGCAGAGTCCCAGCAGCAATGCAGACTTTATGTATCATGCAGTTGAGTTC TGAACACTCGTTGCTGGCATTTGTGTCTCTGAGTTACCCAGTGCTGGCTGCATGTGACTG TGTAAGTGAAAACTGTGCCTTACTACTTCTTTAGAATGTGTAATGAAAGTTATGTGTAAG TGAGCTTATATGTTTCATGGGAGAATTAAATAGAGGAATAAAAATAAATGGAGAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 194-392, gnl|bosTau2|chr29 (17204168-17203970) | |
| 194-392, gnl|Hg17|chr11 (20342356-20342554) | |
| 194-392, gnl|Mm7|chr7 (45980260-45980458) | |
| 500-639, gnl|bosTau2|chr29 (17192749-17192610) | |
| 500-639, gnl|canFam2|chr21 (45590625-45590793) | |
| 500-639, gnl|danRer3|chr7 (7455476-7455633) | |
| 500-639, gnl|dasNov1|scaffold_25320 (16105-16273) | |
| 500-639, gnl|echTel1|scaffold_316374 (313650-313818) | |
| 500-639, gnl|fr1|chrUn (69014283-69014128) | |
| 500-639, gnl|hg17|chr11 (20354685-20354853) | |
| 500-639, gnl|Hg17|chr11 (20354701-20354840) | |
| 500-639, gnl|loxAfr1|scaffold_8461 (15832-16000) | |
| 500-639, gnl|mm7|chr7 (45991459-45991625) | |
| 500-639, gnl|Mm7|chr7 (45991474-45991613) | |
| 500-639, gnl|monDom2|scaffold_10 (66564754-66564924) | |
| 500-639, gnl|oryCun1|scaffold_146924 (4427-4595) | |
| 500-639, gnl|panTro1|chr9 (20594960-20595128) | |
| 500-639, gnl|rheMac2|chr14 (51506913-51506745) | |
| 500-639, gnl|rn3|chr1 (99652616-99652782) | |
| 500-639, gnl|tetNig1|chr5 (11998781-11998638) | |
| 500-639, gnl|xenTro1|scaffold_557 (608179-608011) | |
| 700-1086, gnl|bosTau2|chr29 (17191457-17191070) | |
| 700-1086, gnl|Hg17|chr11 (20361101-20361489) | |
| 700-1086, gnl|Mm7|chr7 (45993965-45994348) | |
| 1329-1675, gnl|bosTau2|chr29 (17190744-17190402) | |
| 1329-1675, gnl|Hg17|chr11 (20361560-20361900) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 194-392, gnl|bosTau2|chr29 (17204168-17203970) | |
| 194-392, gnl|Hg17|chr11 (20342356-20342554) | |
| 194-392, gnl|Mm7|chr7 (45980260-45980458) | |
| 500-639, gnl|bosTau2|chr29 (17192749-17192610) | |
| 500-639, gnl|canFam2|chr21 (45590625-45590793) | |
| 500-639, gnl|danRer3|chr7 (7455476-7455633) | |
| 500-639, gnl|dasNov1|scaffold_25320 (16105-16273) | |
| 500-639, gnl|echTel1|scaffold_316374 (313650-313818) | |
| 500-639, gnl|fr1|chrUn (69014283-69014128) | |
| 500-639, gnl|hg17|chr11 (20354685-20354853) | |
| 500-639, gnl|Hg17|chr11 (20354701-20354840) | |
| 500-639, gnl|loxAfr1|scaffold_8461 (15832-16000) | |
| 500-639, gnl|mm7|chr7 (45991459-45991625) | |
| 500-639, gnl|Mm7|chr7 (45991474-45991613) | |
| 500-639, gnl|monDom2|scaffold_10 (66564754-66564924) | |
| 500-639, gnl|oryCun1|scaffold_146924 (4427-4595) | |
| 500-639, gnl|panTro1|chr9 (20594960-20595128) | |
| 500-639, gnl|rheMac2|chr14 (51506913-51506745) | |
| 500-639, gnl|rn3|chr1 (99652616-99652782) | |
| 500-639, gnl|tetNig1|chr5 (11998781-11998638) | |
| 500-639, gnl|xenTro1|scaffold_557 (608179-608011) | |
| 700-1086, gnl|bosTau2|chr29 (17191457-17191070) | |
| 700-1086, gnl|Hg17|chr11 (20361101-20361489) | |
| 700-1086, gnl|Mm7|chr7 (45993965-45994348) | |
| 1329-1675, gnl|bosTau2|chr29 (17190744-17190402) | |
| 1329-1675, gnl|Hg17|chr11 (20361560-20361900) |
| Expressed library(ies): 32 entry(ies) | More info |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
| sto (0.719295) | |
| cte (0.58548) | |
| sin (0.524843) | |
| liv (0.438853) | |
| lin (0.436808) | |
| lyg (0.399308) | |
| pgl (0.35545) | |
| cje (0.330469) | |
| lun (0.300978) | |
| ski (0.29347) | |
| cga (0.279096) | |
| fce (0.271592) | |
| cty (0.20816) | |
| tes (0.207814) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| mgm (0.180343) | |
| ill (0.175593) | |
| duo (0.172801) | |
| nje (0.16592) | |
| nco (0.161734) | |
| spl (0.143184) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| sug (0.127291) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eep (0.122564) | |
| spc (0.113366) | |
| ldo (0.0970026) |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sto (0.719295) | |
| cte (0.58548) | |
| sin (0.524843) | |
| liv (0.438853) | |
| lin (0.436808) | |
| lyg (0.399308) | |
| pgl (0.35545) | |
| cje (0.330469) | |
| lun (0.300978) | |
| ski (0.29347) | |
| cga (0.279096) | |
| fce (0.271592) | |
| cty (0.20816) | |
| tes (0.207814) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| mgm (0.180343) | |
| ill (0.175593) | |
| duo (0.172801) | |
| nje (0.16592) | |
| nco (0.161734) | |
| spl (0.143184) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| sug (0.127291) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eep (0.122564) | |
| spc (0.113366) | |
| ldo (0.0970026) |