Ss1.1-Tra1-TCH01D110089.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGGCTTTGTAGTCGCGGAGCCAGTCTGCCCAGTGGCTCCTGTTCCTGCTGTGCAGCTCT TCCTGGCTTAGCTGTTCCAGCCGTGACTGCTGCTCCACGCGCTCCAGCTCCCGCGTGAGG CTGGCCCGTGTTCCAATGAGCGCCAGGAGCTGCGGGTTCGACTGTGCCAGCATGAGCATC ATGGAGAGCTGCCGGGGATCCATCTGGGGTCGGAAGGCAAGCCTCAGCTCCTCCAGGGAG GCACACTGTGCGGTCAGCGTAGCCAGGAACTCAGCCAGGTCCGGAGACTCCGGCCCAGCC GGGAAGGAGCTCAGCAAGTAGAAGGTGTTGGTGAAGTCGGCACCTGTCAGGTGCATGGTC TCCAGGAGCTTGGCCACCAGGGCGCCGTCCTCCTCCAGCTCAGCCCGCACAAGGCCCAAC TTCTTCCGCATCTTCTGCAGGTAGTACCTGCGGAACTCAGCATCAAACTCCTCCGCCAGG ATGGCCTCGCCCAGCTCCAGGGGCAGCGCGGGGTCCAGGGCCTCGGCCAGCTTCTGCAGG TTCCACTTGCACACCTCGGGCTGCTTGCTGTACGCATAGCGCCCGGCGGTGTCGGAGGCG TTGCACACGTGGTCAGGGTCATACCTGTCCAGGAAGCCGAAGGGCCCGTAGTCGATGGTG AGCCCCACGACGCTCATGTTGTCCGTGTTGAGCACGCCGTGGCAGAAGCCCACGCACTGC CACTCGGCCACCAGCTGGGCCGTGCGCCGTGTCACCTCCCGGAAGAAGGCGGCATGCCTC TGCACACTGTCGCCGGCGTGGGCAGCCTGGGTTTCGGGGTAAAAAGAGCTGATGACGTAG TCGAGCATCTGCACGCGGATGTCATTCCTGCCGACGCTGGGGCCCGCGCGCCCCGTCAGC TCGTCTGCCGGCTTGAAGATCTCGAAGGAGCCGAACCTGAGGAACGTGGGGGCGATGCGC AGCACGACCGCACACTTCTCGGGCCTGGGGTTGCCGTCATAGAGCACGTCCCGCACCACG GTGGACTGGGACACGACGCAGGCCCCGGCCCGCGTGGTGGGGATGCCCAGGTGGAACATG GCCTCGCTGCACAGGAACTCGCGGATGCTGGAGCGCAGCACTTTGCGGCCGTCGGCCTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGGCTTTGTAGTCGCGGAGCCAGTCTGCCCAGTGGCTCCTGTTCCTGCTGTGCAGCTCT TCCTGGCTTAGCTGTTCCAGCCGTGACTGCTGCTCCACGCGCTCCAGCTCCCGCGTGAGG CTGGCCCGTGTTCCAATGAGCGCCAGGAGCTGCGGGTTCGACTGTGCCAGCATGAGCATC ATGGAGAGCTGCCGGGGATCCATCTGGGGTCGGAAGGCAAGCCTCAGCTCCTCCAGGGAG GCACACTGTGCGGTCAGCGTAGCCAGGAACTCAGCCAGGTCCGGAGACTCCGGCCCAGCC GGGAAGGAGCTCAGCAAGTAGAAGGTGTTGGTGAAGTCGGCACCTGTCAGGTGCATGGTC TCCAGGAGCTTGGCCACCAGGGCGCCGTCCTCCTCCAGCTCAGCCCGCACAAGGCCCAAC TTCTTCCGCATCTTCTGCAGGTAGTACCTGCGGAACTCAGCATCAAACTCCTCCGCCAGG ATGGCCTCGCCCAGCTCCAGGGGCAGCGCGGGGTCCAGGGCCTCGGCCAGCTTCTGCAGG TTCCACTTGCACACCTCGGGCTGCTTGCTGTACGCATAGCGCCCGGCGGTGTCGGAGGCG TTGCACACGTGGTCAGGGTCATACCTGTCCAGGAAGCCGAAGGGCCCGTAGTCGATGGTG AGCCCCACGACGCTCATGTTGTCCGTGTTGAGCACGCCGTGGCAGAAGCCCACGCACTGC CACTCGGCCACCAGCTGGGCCGTGCGCCGTGTCACCTCCCGGAAGAAGGCGGCATGCCTC TGCACACTGTCGCCGGCGTGGGCAGCCTGGGTTTCGGGGTAAAAAGAGCTGATGACGTAG TCGAGCATCTGCACGCGGATGTCATTCCTGCCGACGCTGGGGCCCGCGCGCCCCGTCAGC TCGTCTGCCGGCTTGAAGATCTCGAAGGAGCCGAACCTGAGGAACGTGGGGGCGATGCGC AGCACGACCGCACACTTCTCGGGCCTGGGGTTGCCGTCATAGAGCACGTCCCGCACCACG GTGGACTGGGACACGACGCAGGCCCCGGCCCGCGTGGTGGGGATGCCCAGGTGGAACATG GCCTCGCTGCACAGGAACTCGCGGATGCTGGAGCGCAGCACTTTGCGGCCGTCGGCCTGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 510-627, + strand, RNAz p=0.572158 | |
| 512-627, + strand, RNAz p=0.703009 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 510-627, + strand, RNAz p=0.572158 | |
| 512-627, + strand, RNAz p=0.703009 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 8-193, gnl|bosTau2|chr5 (76040483-76040668) | |
| 8-193, gnl|Hg17|chr22 (48957761-48957576) | |
| 8-193, gnl|Mm7|chr15 (89181782-89181597) | |
| 341-627, gnl|bosTau2|chr5 (76045793-76046079) | |
| 341-627, gnl|canFam2|chr10 (20020355-20020125) | |
| 341-627, gnl|danRer3|chr18 (11738021-11738262) | |
| 341-627, gnl|echTel1|scaffold_202382 (2150-1918) | |
| 341-627, gnl|fr1|chrUn (135564165-135563942) | |
| 341-627, gnl|galGal2|chr1 (17509589-17509351) | |
| 341-627, gnl|hg17|chr22 (48951493-48951741) | |
| 341-627, gnl|Hg17|chr22 (48951800-48951514) | |
| 341-627, gnl|mm7|chr15 (89178859-89179098) | |
| 341-627, gnl|Mm7|chr15 (89179157-89178871) | |
| 341-627, gnl|monDom2|scaffold_119 (502570-502795) | |
| 341-627, gnl|panTro1|chr23 (49397786-49398005) | |
| 341-627, gnl|rheMac2|chr10 (94215623-94215871) | |
| 341-627, gnl|rn3|chr7 (127433953-127434191) | |
| 341-627, gnl|tetNig1|chr13 (6486163-6486392) | |
| 341-627, gnl|xenTro1|scaffold_668 (574845-574602) | |
| 930-1140, gnl|bosTau2|chr5 (76048446-76048656) | |
| 930-1140, gnl|canFam2|chr10 (20022971-20022725) | |
| 930-1140, gnl|danRer3|chr18 (11733241-11733461) | |
| 930-1140, gnl|dasNov1|scaffold_207332 (366-613) | |
| 930-1140, gnl|echTel1|scaffold_202382 (3660-3429) | |
| 930-1140, gnl|fr1|chrUn (135565396-135565173) | |
| 930-1140, gnl|galGal2|chr1 (17515009-17514786) | |
| 930-1140, gnl|hg17|chr22 (48947182-48947430) | |
| 930-1140, gnl|Hg17|chr22 (48947413-48947203) | |
| 930-1140, gnl|loxAfr1|scaffold_57448 (11880-11644) | |
| 930-1140, gnl|mm7|chr15 (89175023-89175266) | |
| 930-1140, gnl|Mm7|chr15 (89175249-89175039) | |
| 930-1140, gnl|monDom2|scaffold_119 (500908-501145) | |
| 930-1140, gnl|panTro1|chr23 (49393325-49393573) | |
| 930-1140, gnl|rheMac2|chr10 (94210643-94210891) | |
| 930-1140, gnl|rn3|chr7 (127430444-127430687) | |
| 930-1140, gnl|tetNig1|chr13 (6485031-6485240) | |
| 930-1140, gnl|xenTro1|scaffold_668 (582150-581906) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 8-193, gnl|bosTau2|chr5 (76040483-76040668) | |
| 8-193, gnl|Hg17|chr22 (48957761-48957576) | |
| 8-193, gnl|Mm7|chr15 (89181782-89181597) | |
| 341-627, gnl|bosTau2|chr5 (76045793-76046079) | |
| 341-627, gnl|canFam2|chr10 (20020355-20020125) | |
| 341-627, gnl|danRer3|chr18 (11738021-11738262) | |
| 341-627, gnl|echTel1|scaffold_202382 (2150-1918) | |
| 341-627, gnl|fr1|chrUn (135564165-135563942) | |
| 341-627, gnl|galGal2|chr1 (17509589-17509351) | |
| 341-627, gnl|hg17|chr22 (48951493-48951741) | |
| 341-627, gnl|Hg17|chr22 (48951800-48951514) | |
| 341-627, gnl|mm7|chr15 (89178859-89179098) | |
| 341-627, gnl|Mm7|chr15 (89179157-89178871) | |
| 341-627, gnl|monDom2|scaffold_119 (502570-502795) | |
| 341-627, gnl|panTro1|chr23 (49397786-49398005) | |
| 341-627, gnl|rheMac2|chr10 (94215623-94215871) | |
| 341-627, gnl|rn3|chr7 (127433953-127434191) | |
| 341-627, gnl|tetNig1|chr13 (6486163-6486392) | |
| 341-627, gnl|xenTro1|scaffold_668 (574845-574602) | |
| 930-1140, gnl|bosTau2|chr5 (76048446-76048656) | |
| 930-1140, gnl|canFam2|chr10 (20022971-20022725) | |
| 930-1140, gnl|danRer3|chr18 (11733241-11733461) | |
| 930-1140, gnl|dasNov1|scaffold_207332 (366-613) | |
| 930-1140, gnl|echTel1|scaffold_202382 (3660-3429) | |
| 930-1140, gnl|fr1|chrUn (135565396-135565173) | |
| 930-1140, gnl|galGal2|chr1 (17515009-17514786) | |
| 930-1140, gnl|hg17|chr22 (48947182-48947430) | |
| 930-1140, gnl|Hg17|chr22 (48947413-48947203) | |
| 930-1140, gnl|loxAfr1|scaffold_57448 (11880-11644) | |
| 930-1140, gnl|mm7|chr15 (89175023-89175266) | |
| 930-1140, gnl|Mm7|chr15 (89175249-89175039) | |
| 930-1140, gnl|monDom2|scaffold_119 (500908-501145) | |
| 930-1140, gnl|panTro1|chr23 (49393325-49393573) | |
| 930-1140, gnl|rheMac2|chr10 (94210643-94210891) | |
| 930-1140, gnl|rn3|chr7 (127430444-127430687) | |
| 930-1140, gnl|tetNig1|chr13 (6485031-6485240) | |
| 930-1140, gnl|xenTro1|scaffold_668 (582150-581906) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.285673) | |
| nlu (0.191681) | |
| csk (0.140746) |