Ss1.1-Tra1-TCH01D110094.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATGCTGTCGACCAGGAGAGCTGAGCGAGGCAGTGGGGAAAGTGAATGGTGCTGAGAGCT CACCTGACACAGGAAGCGGAGCCACATCCTAAGGGTCAAGAAACTGGAGCATGGCTATGA GCACCGGAAGCCACGATTTTGTGGTTCTAAGCAATGGCAGCATCGCAACCAGCACTACCA ACCCTGGTCCCCTCACCCCCTGTGATGGAGACCTTGCAGCCCAGCAGCTCGCACCCAAAG AAGCACCAAGGACAAAAGTGAGTCCAAACGGATGCCTGCAAGTTAATGGCACAGTTAAAT CATCCTTCCTGCCTTTAGACAACCAAAGGACGCCTCAGAGGTTACCCCAGTGCTGCCATC CTTGCCCATACCATCACCCTCTGACTAGCCATGACAGTCACCAAGAGTGCCATCGCGAGG CTGGCTCTGCAGCACCTCCCGCTTTGGCCTCGTGTTGCATGCAGCCACACTCAGAGTACT CTGCATCTCTCTGTCCAAACCATTCACCTGTTTATCAGACTGCGTGCTGTCTTCAGCCCT CTCCATCCTTCTGCCTGCATCATCCGTGGCCTGACCATTTTCAGCATCAGCCTGTGCCGC AGCACATAGCCCGCGTAAGACCATCCAGACCGTTCAAGTTACCAAAAAGCTACGCAGCCC TGATCGCAGACTGGCCCGTGGTCGTCTTGGGCCTGTGTACCGTCTTCATCGTGGTTTGTG CCTTGGTCGGCGTGTTAGTGCCTGAACTTCCTGATTTCTCTGATCCATTGCTGGGTTTTG AACCAAGAGGGACAACAATAGGCCAGAGACTGGTCACGTGGAGTAACATGGTGAAAAACA CAGGATACAAAGCAACCTTAGCAAATTACCCCTTTAAATATGCAGATGAGCAAGCCAAAA GCCATCGGGATGATCGGTGGTCAGAGGATCACTACGACAGAGAGAAAAGAGAAGTCGACT GGAACTTCCACAAAGACAGCTTTTTCTGCGACGTTCCAAGTGACCGATATTCCAGAGTGG TATTTACCTCGGCTGCAGGGGAGACACTGTGGAATTTGCCTGCCATTAAATCAATGTGCA ATGTAGATAATTCAAGGGTATGTAACGTCAGCTGCATCACGTGCAGCCCGAGTCAGGTCA TGCTTCTCAAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATGCTGTCGACCAGGAGAGCTGAGCGAGGCAGTGGGGAAAGTGAATGGTGCTGAGAGCT CACCTGACACAGGAAGCGGAGCCACATCCTAAGGGTCAAGAAACTGGAGCATGGCTATGA GCACCGGAAGCCACGATTTTGTGGTTCTAAGCAATGGCAGCATCGCAACCAGCACTACCA ACCCTGGTCCCCTCACCCCCTGTGATGGAGACCTTGCAGCCCAGCAGCTCGCACCCAAAG AAGCACCAAGGACAAAAGTGAGTCCAAACGGATGCCTGCAAGTTAATGGCACAGTTAAAT CATCCTTCCTGCCTTTAGACAACCAAAGGACGCCTCAGAGGTTACCCCAGTGCTGCCATC CTTGCCCATACCATCACCCTCTGACTAGCCATGACAGTCACCAAGAGTGCCATCGCGAGG CTGGCTCTGCAGCACCTCCCGCTTTGGCCTCGTGTTGCATGCAGCCACACTCAGAGTACT CTGCATCTCTCTGTCCAAACCATTCACCTGTTTATCAGACTGCGTGCTGTCTTCAGCCCT CTCCATCCTTCTGCCTGCATCATCCGTGGCCTGACCATTTTCAGCATCAGCCTGTGCCGC AGCACATAGCCCGCGTAAGACCATCCAGACCGTTCAAGTTACCAAAAAGCTACGCAGCCC TGATCGCAGACTGGCCCGTGGTCGTCTTGGGCCTGTGTACCGTCTTCATCGTGGTTTGTG CCTTGGTCGGCGTGTTAGTGCCTGAACTTCCTGATTTCTCTGATCCATTGCTGGGTTTTG AACCAAGAGGGACAACAATAGGCCAGAGACTGGTCACGTGGAGTAACATGGTGAAAAACA CAGGATACAAAGCAACCTTAGCAAATTACCCCTTTAAATATGCAGATGAGCAAGCCAAAA GCCATCGGGATGATCGGTGGTCAGAGGATCACTACGACAGAGAGAAAAGAGAAGTCGACT GGAACTTCCACAAAGACAGCTTTTTCTGCGACGTTCCAAGTGACCGATATTCCAGAGTGG TATTTACCTCGGCTGCAGGGGAGACACTGTGGAATTTGCCTGCCATTAAATCAATGTGCA ATGTAGATAATTCAAGGGTATGTAACGTCAGCTGCATCACGTGCAGCCCGAGTCAGGTCA TGCTTCTCAAAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 368-487, + strand, RNAz p=0.770786 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 368-487, + strand, RNAz p=0.770786 |
| Aligned organism(s): 71 entry(ies) | More info |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
| 89-611, gnl|bosTau2|chr16 (14366808-14366286) | |
| 89-611, gnl|Hg17|chr1 (219504539-219505061) | |
| 89-611, gnl|Mm7|chrUn_random (2192270-2191752) | |
| 773-901, gnl|bosTau2|chr16 (14321758-14321630) | |
| 773-901, gnl|canFam2|chr38 (26709158-26709016) | |
| 773-901, gnl|canFam2|chr38 (26709158-26709016) | |
| 773-901, gnl|danRer3|chr21 (33215994-33216138) | |
| 773-901, gnl|danRer3|chr21 (33215994-33216138) | |
| 773-901, gnl|dasNov1|scaffold_39046 (7878-8020) | |
| 773-901, gnl|dasNov1|scaffold_39046 (7878-8020) | |
| 773-901, gnl|echTel1|scaffold_279387 (54245-54105) | |
| 773-901, gnl|echTel1|scaffold_279387 (54245-54105) | |
| 773-901, gnl|fr1|chrUn (148297714-148297853) | |
| 773-901, gnl|fr1|chrUn (148297714-148297853) | |
| 773-901, gnl|galGal2|chr3 (14237477-14237339) | |
| 773-901, gnl|galGal2|chr3 (14237477-14237339) | |
| 773-901, gnl|hg17|chr1 (219553248-219553390) | |
| 773-901, gnl|Hg17|chr1 (219553256-219553384) | |
| 773-901, gnl|hg17|chr1_random (2556637-2556779) | |
| 773-901, gnl|loxAfr1|scaffold_6553 (54565-54707) | |
| 773-901, gnl|loxAfr1|scaffold_6553 (54565-54707) | |
| 773-901, gnl|mm7|chrUn_random (11695911-11695769) | |
| 773-901, gnl|mm7|chrUn_random (11695911-11695769) | |
| 773-901, gnl|Mm7|chrUn_random (11695901-11695773) | |
| 773-901, gnl|monDom2|scaffold_13 (29856963-29857105) | |
| 773-901, gnl|monDom2|scaffold_13 (29856963-29857105) | |
| 773-901, gnl|oryCun1|scaffold_174073 (54296-54154) | |
| 773-901, gnl|oryCun1|scaffold_174073 (54296-54154) | |
| 773-901, gnl|panTro1|chr1 (203415114-203415256) | |
| 773-901, gnl|panTro1|chr1 (203415114-203415256) | |
| 773-901, gnl|rheMac2|chr1 (147268015-147267873) | |
| 773-901, gnl|rheMac2|chr1 (147268015-147267873) | |
| 773-901, gnl|rn3|chr13 (99296905-99296763) | |
| 773-901, gnl|rn3|chr13 (99296905-99296763) | |
| 773-901, gnl|tetNig1|chrUn_random (125514737-125514869) | |
| 773-901, gnl|tetNig1|chrUn_random (125514737-125514869) | |
| 773-901, gnl|xenTro1|scaffold_759 (102182-102040) | |
| 773-901, gnl|xenTro1|scaffold_759 (102182-102040) | |
| 996-1152, gnl|bosTau2|chr16 (14318994-14318837) | |
| 996-1152, gnl|canFam2|chr38 (26706844-26706721) | |
| 996-1152, gnl|canFam2|chr38 (26706844-26706721) | |
| 996-1152, gnl|danRer3|chr21 (33224487-33224620) | |
| 996-1152, gnl|danRer3|chr21 (33224487-33224620) | |
| 996-1152, gnl|echTel1|scaffold_279387 (50190-50067) | |
| 996-1152, gnl|echTel1|scaffold_279387 (50190-50067) | |
| 996-1152, gnl|fr1|chrUn (148299375-148299481) | |
| 996-1152, gnl|fr1|chrUn (148299375-148299481) | |
| 996-1152, gnl|galGal2|chr3 (14233795-14233680) | |
| 996-1152, gnl|galGal2|chr3 (14233795-14233680) | |
| 996-1152, gnl|hg17|chr1 (219556604-219556726) | |
| 996-1152, gnl|Hg17|chr1 (219556618-219556776) | |
| 996-1152, gnl|hg17|chr1_random (2560000-2560122) | |
| 996-1152, gnl|loxAfr1|scaffold_6553 (58649-58772) | |
| 996-1152, gnl|loxAfr1|scaffold_6553 (58649-58772) | |
| 996-1152, gnl|mm7|chrUn_random (11693210-11693092) | |
| 996-1152, gnl|mm7|chrUn_random (11693210-11693092) | |
| 996-1152, gnl|Mm7|chrUn_random (11693196-11693043) | |
| 996-1152, gnl|monDom2|scaffold_13 (29861297-29861415) | |
| 996-1152, gnl|monDom2|scaffold_13 (29861297-29861415) | |
| 996-1152, gnl|oryCun1|scaffold_174073 (51065-50942) | |
| 996-1152, gnl|oryCun1|scaffold_174073 (51065-50942) | |
| 996-1152, gnl|panTro1|chr1 (203418482-203418603) | |
| 996-1152, gnl|panTro1|chr1 (203418482-203418603) | |
| 996-1152, gnl|rheMac2|chr1 (147264640-147264517) | |
| 996-1152, gnl|rheMac2|chr1 (147264640-147264517) | |
| 996-1152, gnl|rn3|chr13 (99294039-99293921) | |
| 996-1152, gnl|rn3|chr13 (99294039-99293921) | |
| 996-1152, gnl|tetNig1|chrUn_random (125516898-125517015) | |
| 996-1152, gnl|tetNig1|chrUn_random (125516898-125517015) | |
| 996-1152, gnl|xenTro1|scaffold_759 (100820-100697) | |
| 996-1152, gnl|xenTro1|scaffold_759 (100820-100697) |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 89-611, gnl|bosTau2|chr16 (14366808-14366286) | |
| 89-611, gnl|Hg17|chr1 (219504539-219505061) | |
| 89-611, gnl|Mm7|chrUn_random (2192270-2191752) | |
| 773-901, gnl|bosTau2|chr16 (14321758-14321630) | |
| 773-901, gnl|canFam2|chr38 (26709158-26709016) | |
| 773-901, gnl|canFam2|chr38 (26709158-26709016) | |
| 773-901, gnl|danRer3|chr21 (33215994-33216138) | |
| 773-901, gnl|danRer3|chr21 (33215994-33216138) | |
| 773-901, gnl|dasNov1|scaffold_39046 (7878-8020) | |
| 773-901, gnl|dasNov1|scaffold_39046 (7878-8020) | |
| 773-901, gnl|echTel1|scaffold_279387 (54245-54105) | |
| 773-901, gnl|echTel1|scaffold_279387 (54245-54105) | |
| 773-901, gnl|fr1|chrUn (148297714-148297853) | |
| 773-901, gnl|fr1|chrUn (148297714-148297853) | |
| 773-901, gnl|galGal2|chr3 (14237477-14237339) | |
| 773-901, gnl|galGal2|chr3 (14237477-14237339) | |
| 773-901, gnl|hg17|chr1 (219553248-219553390) | |
| 773-901, gnl|Hg17|chr1 (219553256-219553384) | |
| 773-901, gnl|hg17|chr1_random (2556637-2556779) | |
| 773-901, gnl|loxAfr1|scaffold_6553 (54565-54707) | |
| 773-901, gnl|loxAfr1|scaffold_6553 (54565-54707) | |
| 773-901, gnl|mm7|chrUn_random (11695911-11695769) | |
| 773-901, gnl|mm7|chrUn_random (11695911-11695769) | |
| 773-901, gnl|Mm7|chrUn_random (11695901-11695773) | |
| 773-901, gnl|monDom2|scaffold_13 (29856963-29857105) | |
| 773-901, gnl|monDom2|scaffold_13 (29856963-29857105) | |
| 773-901, gnl|oryCun1|scaffold_174073 (54296-54154) | |
| 773-901, gnl|oryCun1|scaffold_174073 (54296-54154) | |
| 773-901, gnl|panTro1|chr1 (203415114-203415256) | |
| 773-901, gnl|panTro1|chr1 (203415114-203415256) | |
| 773-901, gnl|rheMac2|chr1 (147268015-147267873) | |
| 773-901, gnl|rheMac2|chr1 (147268015-147267873) | |
| 773-901, gnl|rn3|chr13 (99296905-99296763) | |
| 773-901, gnl|rn3|chr13 (99296905-99296763) | |
| 773-901, gnl|tetNig1|chrUn_random (125514737-125514869) | |
| 773-901, gnl|tetNig1|chrUn_random (125514737-125514869) | |
| 773-901, gnl|xenTro1|scaffold_759 (102182-102040) | |
| 773-901, gnl|xenTro1|scaffold_759 (102182-102040) | |
| 996-1152, gnl|bosTau2|chr16 (14318994-14318837) | |
| 996-1152, gnl|canFam2|chr38 (26706844-26706721) | |
| 996-1152, gnl|canFam2|chr38 (26706844-26706721) | |
| 996-1152, gnl|danRer3|chr21 (33224487-33224620) | |
| 996-1152, gnl|danRer3|chr21 (33224487-33224620) | |
| 996-1152, gnl|echTel1|scaffold_279387 (50190-50067) | |
| 996-1152, gnl|echTel1|scaffold_279387 (50190-50067) | |
| 996-1152, gnl|fr1|chrUn (148299375-148299481) | |
| 996-1152, gnl|fr1|chrUn (148299375-148299481) | |
| 996-1152, gnl|galGal2|chr3 (14233795-14233680) | |
| 996-1152, gnl|galGal2|chr3 (14233795-14233680) | |
| 996-1152, gnl|hg17|chr1 (219556604-219556726) | |
| 996-1152, gnl|Hg17|chr1 (219556618-219556776) | |
| 996-1152, gnl|hg17|chr1_random (2560000-2560122) | |
| 996-1152, gnl|loxAfr1|scaffold_6553 (58649-58772) | |
| 996-1152, gnl|loxAfr1|scaffold_6553 (58649-58772) | |
| 996-1152, gnl|mm7|chrUn_random (11693210-11693092) | |
| 996-1152, gnl|mm7|chrUn_random (11693210-11693092) | |
| 996-1152, gnl|Mm7|chrUn_random (11693196-11693043) | |
| 996-1152, gnl|monDom2|scaffold_13 (29861297-29861415) | |
| 996-1152, gnl|monDom2|scaffold_13 (29861297-29861415) | |
| 996-1152, gnl|oryCun1|scaffold_174073 (51065-50942) | |
| 996-1152, gnl|oryCun1|scaffold_174073 (51065-50942) | |
| 996-1152, gnl|panTro1|chr1 (203418482-203418603) | |
| 996-1152, gnl|panTro1|chr1 (203418482-203418603) | |
| 996-1152, gnl|rheMac2|chr1 (147264640-147264517) | |
| 996-1152, gnl|rheMac2|chr1 (147264640-147264517) | |
| 996-1152, gnl|rn3|chr13 (99294039-99293921) | |
| 996-1152, gnl|rn3|chr13 (99294039-99293921) | |
| 996-1152, gnl|tetNig1|chrUn_random (125516898-125517015) | |
| 996-1152, gnl|tetNig1|chrUn_random (125516898-125517015) | |
| 996-1152, gnl|xenTro1|scaffold_759 (100820-100697) | |
| 996-1152, gnl|xenTro1|scaffold_759 (100820-100697) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| amn (0.417711) | |
| nlu (0.191681) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| eep (0.122564) | |
| jca (0.11396) | |
| jej (0.0989218) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| nlu (0.191681) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| eep (0.122564) | |
| jca (0.11396) | |
| jej (0.0989218) |