Non-Coding RNA Search

Ss1.1-Tra1-TCH01D120004.5

Sequence:


               
               GGGAGAGGATCTCTGTGCTCAAGGCCTCTCGGCGGAACCTGGTCGACAGGACCACCGCTC
TGCGGTGCCTCGAGGCCCAGGTCAGCACTGGGGGCGTCATCGACCCCCTGACCGGCAAGA
GGTACCGGGTGGCCGAAGCTTTGCACAGGGGCCTGGTGGACGAGGGCTTTGCCCAGCAGC
TGCGGCAGTGTGAGCTGGTGATCACGGGCGTCGGGCACCCGGTCACCCACAAAGTGATGT
CGGTGCTGGAGGCCGTGAGCGCGAACATCATTAGCAGGGACTTGGGAATTCGCTGCTTGG
AATTTCAGTACCTGACGGGGGGGCTGGTGGAGCCCCAGACGCAGACCCGGTTGTCCATCG
AAGAGGCCTTGCAAGTCGGGATTATAGATGTTTTCATCGCGACCAGACTCAAAGACCAGA
AGTCCTATGCCAGAAGCATCCTGTGCCCCCAGACCAAGAGGAAGTTGACGTACAAAGAAG
CCTTGGAGAAAGCCGACTTTGATTTCCACACGGGACTGAAACTCTTAGAAGTCTCGGAGC
CCTTGATGACAGGCATCTCTAGTCTCTACTATTCCTCGTAATGGGATGCATCTAGATAGC
CGGGCGCAGGGGTGAGGCCGTCCGTCCCGTGTGCCCGCAGCCTGATGGTGTCAGGTGCAC
AGGCTAGGAATAGTAACCTTGTCACCATTTGTTTCTCGAGGGCTGGAAGTAGCTGACTGC
ACAGAAGAGAGGAGATTTTTTTTTTTTTTACATCAAAAACACTAAGATTGACTGCTCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGAGGATCTCTGTGCTCAAGGCCTCTCGGCGGAACCTGGTCGACAGGACCACCGCTC
TGCGGTGCCTCGAGGCCCAGGTCAGCACTGGGGGCGTCATCGACCCCCTGACCGGCAAGA
GGTACCGGGTGGCCGAAGCTTTGCACAGGGGCCTGGTGGACGAGGGCTTTGCCCAGCAGC
TGCGGCAGTGTGAGCTGGTGATCACGGGCGTCGGGCACCCGGTCACCCACAAAGTGATGT
CGGTGCTGGAGGCCGTGAGCGCGAACATCATTAGCAGGGACTTGGGAATTCGCTGCTTGG
AATTTCAGTACCTGACGGGGGGGCTGGTGGAGCCCCAGACGCAGACCCGGTTGTCCATCG
AAGAGGCCTTGCAAGTCGGGATTATAGATGTTTTCATCGCGACCAGACTCAAAGACCAGA
AGTCCTATGCCAGAAGCATCCTGTGCCCCCAGACCAAGAGGAAGTTGACGTACAAAGAAG
CCTTGGAGAAAGCCGACTTTGATTTCCACACGGGACTGAAACTCTTAGAAGTCTCGGAGC
CCTTGATGACAGGCATCTCTAGTCTCTACTATTCCTCGTAATGGGATGCATCTAGATAGC
CGGGCGCAGGGGTGAGGCCGTCCGTCCCGTGTGCCCGCAGCCTGATGGTGTCAGGTGCAC
AGGCTAGGAATAGTAACCTTGTCACCATTTGTTTCTCGAGGGCTGGAAGTAGCTGACTGC
ACAGAAGAGAGGAGATTTTTTTTTTTTTTACATCAAAAACACTAAGATTGACTGCTCCCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               120-239, - strand, RNAz p=0.973076

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, - strand, RNAz p=0.973076

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-745, gnl|bosTau2|chr23 (1569821-1569068)
               

               
               1-745, gnl|Mm7|chr1 (34405677-34406411)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-745, gnl|bosTau2|chr23 (1569821-1569068)
               

               
               1-745, gnl|Mm7|chr1 (34405677-34406411)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cut (0.169924)
               

               
               che (0.136314)
               

               
               bla (0.124347)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               che (0.136314)
               

               
               bla (0.124347)

	1-745, gnl\|bosTau2\|chr23 (1569821-1569068)
	1-745, gnl\|Mm7\|chr1 (34405677-34406411)