Ss1.1-Tra1-TCH01D120007.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCGGTCACAATTACCCTGGGCGGGTACCAGCCTATTTTCACCATGAGTGCCCAGCAAAG CCAGCTGAAAGTTATGGATCAGCCCAAGTTTAATAAATTTATGAAAGCTTTTTCTAGGGA CACTGGTGCTATGCAATTTCTGGAAAATTATGAAAAAGAGGACATAACAGTAGCAGAACT GGAAGGAAACTCAAATTCTTTGTGGACCATCAGCCCCCCCAGTAAGCAGAAAATGATAAG CGAACTCATGGACCACAATAGTAGCTTCTCTGTTGTTTTTTCATGGAGTATTCAGAGAAA CATGAGTCTGGGTGCAAAAGCAGAAATAGCAACAGATAAGCTTTCTTTTCCTCTTAAAAA TAATACACGGAAGAGTATCGCTAAAATGATAGCCGGCAACGACATGGAAAGTTCCACGAC GCCGGTGACCATAGAGAGGATTTACCCGTACTACGTGAAAGCCCCCAGCGACTCAAACTC CAAGCCTATAAAGCAACTTCTGTCTGAAAATAATTTCATGAACATCACCATCATTTTGTC CAGAGACAATACGACGAAGTCGAACAGTGAGTGGTGGGTTCTCAACCTGACTGGAAATAG ATTATACAACCAGGAAGCCCAGGCCCTGGAGCTGGTGGTCTTCAACGACAAGGTCAGCCC CCCTAGCCTGGGGTTCCTGGCCGGCTACGGCATTATGGGATTATATGCTTCAGTTGTCTT GGTGATTGGGAAGTTTGTCCGTGAATTCTTCAGTGGGATTTCTCACTCCATCATGTTTGA AGAGCTTCCAAATGTGGATCGGATCTTGAAGCTGTGCACAGATATTTTTCTAGTTCGAGA GACCGGGGAGCTGGAACTGGAGGAGGATCTCTATGCCAAATTAATATTCCTGTACCGTTC GCCAGAAACCATGATCAAATGGACCAGAGAGAAAACAAACTGACGCCCCAGGCCACAGCC TGCAAGCCAAGTTAACCCGGGGATTTTCAAAAGAAAAAGAAAAAAAAAAGAAAAGAAAAG CACAATATTCTCCTAAGAGCTCAGCATTTCTCATCCGATGGAAATGGTTTCTCTCCCGAC AGGTGCACAGGGCGTGGGCTTCCTTCTGCGGTCGGAGCTGCCTGGCGAGTGAAGACACTG CTAGAAAGTTCCACGTAATTCCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCGGTCACAATTACCCTGGGCGGGTACCAGCCTATTTTCACCATGAGTGCCCAGCAAAG CCAGCTGAAAGTTATGGATCAGCCCAAGTTTAATAAATTTATGAAAGCTTTTTCTAGGGA CACTGGTGCTATGCAATTTCTGGAAAATTATGAAAAAGAGGACATAACAGTAGCAGAACT GGAAGGAAACTCAAATTCTTTGTGGACCATCAGCCCCCCCAGTAAGCAGAAAATGATAAG CGAACTCATGGACCACAATAGTAGCTTCTCTGTTGTTTTTTCATGGAGTATTCAGAGAAA CATGAGTCTGGGTGCAAAAGCAGAAATAGCAACAGATAAGCTTTCTTTTCCTCTTAAAAA TAATACACGGAAGAGTATCGCTAAAATGATAGCCGGCAACGACATGGAAAGTTCCACGAC GCCGGTGACCATAGAGAGGATTTACCCGTACTACGTGAAAGCCCCCAGCGACTCAAACTC CAAGCCTATAAAGCAACTTCTGTCTGAAAATAATTTCATGAACATCACCATCATTTTGTC CAGAGACAATACGACGAAGTCGAACAGTGAGTGGTGGGTTCTCAACCTGACTGGAAATAG ATTATACAACCAGGAAGCCCAGGCCCTGGAGCTGGTGGTCTTCAACGACAAGGTCAGCCC CCCTAGCCTGGGGTTCCTGGCCGGCTACGGCATTATGGGATTATATGCTTCAGTTGTCTT GGTGATTGGGAAGTTTGTCCGTGAATTCTTCAGTGGGATTTCTCACTCCATCATGTTTGA AGAGCTTCCAAATGTGGATCGGATCTTGAAGCTGTGCACAGATATTTTTCTAGTTCGAGA GACCGGGGAGCTGGAACTGGAGGAGGATCTCTATGCCAAATTAATATTCCTGTACCGTTC GCCAGAAACCATGATCAAATGGACCAGAGAGAAAACAAACTGACGCCCCAGGCCACAGCC TGCAAGCCAAGTTAACCCGGGGATTTTCAAAAGAAAAAGAAAAAAAAAAGAAAAGAAAAG CACAATATTCTCCTAAGAGCTCAGCATTTCTCATCCGATGGAAATGGTTTCTCTCCCGAC AGGTGCACAGGGCGTGGGCTTCCTTCTGCGGTCGGAGCTGCCTGGCGAGTGAAGACACTG CTAGAAAGTTCCACGTAATTCCAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 97-297, gnl|bosTau2|chr24 (29843894-29844096) | |
| 97-297, gnl|canFam2|chr7 (79530192-79530386) | |
| 97-297, gnl|danRer3|chr17 (29448560-29448367) | |
| 97-297, gnl|dasNov1|scaffold_12061 (42873-43067) | |
| 97-297, gnl|echTel1|scaffold_282716 (40414-40228) | |
| 97-297, gnl|fr1|chrUn (131882293-131882477) | |
| 97-297, gnl|galGal2|chr2 (98012204-98012391) | |
| 97-297, gnl|hg17|chr18 (10670194-10670388) | |
| 97-297, gnl|Hg17|chr18 (10670398-10670196) | |
| 97-297, gnl|loxAfr1|scaffold_45260 (4051-3857) | |
| 97-297, gnl|mm7|chr18 (63408628-63408822) | |
| 97-297, gnl|Mm7|chr18 (63408832-63408630) | |
| 97-297, gnl|monDom2|scaffold_21 (21743026-21742840) | |
| 97-297, gnl|oryCun1|scaffold_213396 (46096-46301) | |
| 97-297, gnl|panTro1|chr17_random (1300401-1300595) | |
| 97-297, gnl|rheMac2|chr18 (2650205-2650399) | |
| 97-297, gnl|rn3|chr18 (59228420-59228614) | |
| 97-297, gnl|tetNig1|chr15_random (1669842-1669667) | |
| 97-297, gnl|xenTro1|scaffold_333 (1188803-1188973) | |
| 690-924, gnl|bosTau2|chr13 (38085747-38085979) | |
| 690-924, gnl|Mm7|chr8 (121124237-121124003) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 97-297, gnl|bosTau2|chr24 (29843894-29844096) | |
| 97-297, gnl|canFam2|chr7 (79530192-79530386) | |
| 97-297, gnl|danRer3|chr17 (29448560-29448367) | |
| 97-297, gnl|dasNov1|scaffold_12061 (42873-43067) | |
| 97-297, gnl|echTel1|scaffold_282716 (40414-40228) | |
| 97-297, gnl|fr1|chrUn (131882293-131882477) | |
| 97-297, gnl|galGal2|chr2 (98012204-98012391) | |
| 97-297, gnl|hg17|chr18 (10670194-10670388) | |
| 97-297, gnl|Hg17|chr18 (10670398-10670196) | |
| 97-297, gnl|loxAfr1|scaffold_45260 (4051-3857) | |
| 97-297, gnl|mm7|chr18 (63408628-63408822) | |
| 97-297, gnl|Mm7|chr18 (63408832-63408630) | |
| 97-297, gnl|monDom2|scaffold_21 (21743026-21742840) | |
| 97-297, gnl|oryCun1|scaffold_213396 (46096-46301) | |
| 97-297, gnl|panTro1|chr17_random (1300401-1300595) | |
| 97-297, gnl|rheMac2|chr18 (2650205-2650399) | |
| 97-297, gnl|rn3|chr18 (59228420-59228614) | |
| 97-297, gnl|tetNig1|chr15_random (1669842-1669667) | |
| 97-297, gnl|xenTro1|scaffold_333 (1188803-1188973) | |
| 690-924, gnl|bosTau2|chr13 (38085747-38085979) | |
| 690-924, gnl|Mm7|chr8 (121124237-121124003) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cut (0.169924) | |
| cje (0.165235) | |
| eep (0.122564) | |
| med (0.116252) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (0.169924) | |
| cje (0.165235) | |
| eep (0.122564) | |
| med (0.116252) |