Non-Coding RNA Search

Ss1.1-Tra1-TCH01E010027.5

Sequence:


               
               CAAGGGTCCAAGACCCCTCTCTTCTGGCCTGCAGATCCTCTGCCTGTGAAAGCAGTATTA
AAGCAGCTTTTCCCGTTGCAAAGAAACAGGGAGTCAGAACCCGCCCCCCTGCCAGCTTCA
GGGACCCCAAAGTGCCTTCTGAGCTTCCTCAGAATTCCACATCACCCATGACTCTACCAC
TGTCAGCTGATTCCCTGCATCCCTGCTCCAGAATTGAATTCTGGAACTATGAGCTGCATC
AGGCTGGGCAGAGAAGCACCCAACCCCTAGTATGTCTGCTGGGGACTTTTTCCCAGGAGT
TAATTCAGAGCCAGGAGCCTGGGCTCTCCTGCTCAGACCTGCCTCCCGAGGGGCCTTGTT
TGGCTGGTAATGTTTTAAGCAAGGTCTTTCCACATCTGTCATCCTGCTAGCAAAGGAAAT
TGAGCAATGTTCCTGTAGCCTGTGCTGGCTGGCAACTTTCCAATGTGGGGGCTACTTGGG
CTCCTCCCACTTCAAGACCAAGTGTTGGCTTCTCCCCTCCCTCGCCTCCAGCCATATCAT
CGCTGGGGGTCCTGTGACATCTTCTGCCAGCAGAGGAATCACTCTAAAGAATGCTTTAGA
GGGCTTGGGCCAGAAGAGTGAGAAGGCAGGGTTAGGTAACTGCTGTTGCCACTTGCATTT
CCCAGATGCAGCTTGGGAGTGGCAGGCTGATGGGGGATGGGCAGGGACCAGTCTCCCTGG
TTGAGGCACTAGCAGGGAGCCCACCAGTTTGGGGTCCCCTGCTACCAGGGGCTCCTGCTG
GGAGGTGATGTGTGGTTTGGTGATCTACAGCTTGACACCACCCCCTCCAGCTTCTATCCT
CAGCTCAGTGGCCCTTTCTGCCTATCAGAGTCCAAACCTTGTGACATGGCACCTCTTTGT
GTCCTGGAACACTGATGCTCCAGAATTTGACAGACACTGTGAGGGCAAACAAAGCGTGCG
GTCTGTGTTCCCTGCTTCAGTCTCCCAGTCCTCGCTGCCAAAAAACGACTTCCTGTAGCC
TTCAAGATCTCAGCTGCCTCCTTCCAGGAGCAGGGAAGGGCTGGTTCAAGTTTAACATAG
CTCTTACCTTTGTGGAAGCTGGAGTTTAAATTTATTTCTGGAGGGCCCTGTTCACCCCAA
ACTAGGGGCTGCCCTTGGAGCTTCCAAGTGAGGATATCTTTGTATATTAACAAATTAGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGGGTCCAAGACCCCTCTCTTCTGGCCTGCAGATCCTCTGCCTGTGAAAGCAGTATTA
AAGCAGCTTTTCCCGTTGCAAAGAAACAGGGAGTCAGAACCCGCCCCCCTGCCAGCTTCA
GGGACCCCAAAGTGCCTTCTGAGCTTCCTCAGAATTCCACATCACCCATGACTCTACCAC
TGTCAGCTGATTCCCTGCATCCCTGCTCCAGAATTGAATTCTGGAACTATGAGCTGCATC
AGGCTGGGCAGAGAAGCACCCAACCCCTAGTATGTCTGCTGGGGACTTTTTCCCAGGAGT
TAATTCAGAGCCAGGAGCCTGGGCTCTCCTGCTCAGACCTGCCTCCCGAGGGGCCTTGTT
TGGCTGGTAATGTTTTAAGCAAGGTCTTTCCACATCTGTCATCCTGCTAGCAAAGGAAAT
TGAGCAATGTTCCTGTAGCCTGTGCTGGCTGGCAACTTTCCAATGTGGGGGCTACTTGGG
CTCCTCCCACTTCAAGACCAAGTGTTGGCTTCTCCCCTCCCTCGCCTCCAGCCATATCAT
CGCTGGGGGTCCTGTGACATCTTCTGCCAGCAGAGGAATCACTCTAAAGAATGCTTTAGA
GGGCTTGGGCCAGAAGAGTGAGAAGGCAGGGTTAGGTAACTGCTGTTGCCACTTGCATTT
CCCAGATGCAGCTTGGGAGTGGCAGGCTGATGGGGGATGGGCAGGGACCAGTCTCCCTGG
TTGAGGCACTAGCAGGGAGCCCACCAGTTTGGGGTCCCCTGCTACCAGGGGCTCCTGCTG
GGAGGTGATGTGTGGTTTGGTGATCTACAGCTTGACACCACCCCCTCCAGCTTCTATCCT
CAGCTCAGTGGCCCTTTCTGCCTATCAGAGTCCAAACCTTGTGACATGGCACCTCTTTGT
GTCCTGGAACACTGATGCTCCAGAATTTGACAGACACTGTGAGGGCAAACAAAGCGTGCG
GTCTGTGTTCCCTGCTTCAGTCTCCCAGTCCTCGCTGCCAAAAAACGACTTCCTGTAGCC
TTCAAGATCTCAGCTGCCTCCTTCCAGGAGCAGGGAAGGGCTGGTTCAAGTTTAACATAG
CTCTTACCTTTGTGGAAGCTGGAGTTTAAATTTATTTCTGGAGGGCCCTGTTCACCCCAA
ACTAGGGGCTGCCCTTGGAGCTTCCAAGTGAGGATATCTTTGTATATTAACAAATTAGAC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               162-392, - strand, RNAz p=0.998744
               

               
               604-833, - strand, RNAz p=0.999071
               

               
               1103-1200, - strand, RNAz p=0.669458

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               162-392, - strand, RNAz p=0.998744
               

               
               604-833, - strand, RNAz p=0.999071
               

               
               1103-1200, - strand, RNAz p=0.669458

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               7-1200, gnl|bosTau2|chr7 (11194003-11192884)
               

               
               7-1200, gnl|Hg17|chr19 (11296528-11294955)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-1200, gnl|bosTau2|chr7 (11194003-11192884)
               

               
               7-1200, gnl|Hg17|chr19 (11296528-11294955)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ton (0.1755)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)

	162-392, - strand, RNAz p=0.998744
	604-833, - strand, RNAz p=0.999071
	1103-1200, - strand, RNAz p=0.669458

	7-1200, gnl\|bosTau2\|chr7 (11194003-11192884)
	7-1200, gnl\|Hg17\|chr19 (11296528-11294955)