Non-Coding RNA Search

Ss1.1-Tra1-TCH01E010066.5

Sequence:


               
               GTGGTGGCTGGGCCGGGGGAAATGGCGGCTCCAGGGGAGAGTGGGGCTTCGGGTGGCGGA
GGCAGCACAGAGGAAGCTTTTATGACCTTCTACAGCGAGGTGAAACAAATAGAGAAGAGA
GATTCGGTTCTAACGTCTAAAAATCAGATTGAAAGATTGACTCGTCCTGGTTCCTCCTAC
TTCAACTTGAACCCATTTGAGGTTCTTCAGATAGATCCTGAAGTGACAGATGAAGAAATA
AAAAAGAGGTTTCGGCAGCTATCCATACTGGTGCATCCTGACAAAAATCAAGATGATGCT
GACAGAGCACAAAAGGCTTTTGAAGCTGTGGACAAAGCTTACAAGTTGCTACTGGATCAG
GAACAAAAGAAGAGGGCCCTGGATGTAATTCAGGCAGGAAAAGAATACGTGGAACACACC
GTGAAAGAGCGAAAAAAGCAATTAAAGAAGGAAGGAAAGCCTACAAATGTGGAGGAAGAT
GATCCTGAGCTGTTTAAACAAGCAGTATACAAACAGACCATGAAACTCTTTGCTGAGCTG
GAAATTAAAAGGAAAGAAAGAGAAGCCAAGGAGATGCATGAAAGGAAGCGACAAAGGGAA
GAAGAGATTGAAGCTCAAGAAAAAGCCAAACGAGAAAGGGAGTGGCAGAAAAATTTTGAG
GAAAGTCGAGATGGTCGTGTGGACAGCTGGCGAAACTTCCAAGCTAATACCAAGGGGAAG
AAAGAGAAGAAGAACCGGACCTTCCTGAGACCACCAAAAGTAAAAATGGAACAGCGTGAG
TGACCTGAGGTCACTGCCACAGAACCTTCCTTCGGCTCTCCCCTTCCTGCTCTGAAGGAC
TCATTCTTTTTCCCATTTTCACCCCAACATAGAGTAGTCTTTGCTTTTTAGTCCATTTTG
TTTTCAATACAATTTAATATCGATCAGAGTAATTCTTTTGTACATTGAAATGAGGGGCTC
GGTTTAAAAAGAAACCTCCCCCACCCCTACCCCAGACCAACCAGGATCAGAAGGTGCCGC
CGTTGGTGCTGCCTTCTCCTCCCACAGCCTGTAACTTAATGTTTTGTACTCCACTCAATT
GTGATGGTTAGAAACTTTGTGTATAGTTTGTGGAAATCATCCAGTTAATTAAACACGTTG
CTTAAAATGGTGTTGCCTTGACTTCAGAGACAAGCCCGGGCCACCTTAGGAAGCCCCTTT
GCTTCAGTTGCTTGCTTCTGGGTGTGGCATCCTTCCAAGCCCCAGATCAGACGGGGAAGG
CAGTGGGCACACAGAGCAGCCACTCGATGCCCTGACGTCCCCTGGAGTTTGGCATGTGCT
TTCCTATCCGGCCAGTCTGCGTGGCACGAGGCTGCAAGCCACCCAAACCTGTTCACTTTC
CAAAGAGCTGGCCATTCTCCATCGTGTACCGTTGTGTCCTAGCCTGTCTGCATTTGTTAG
TGGTAATATTCTGTATGTGTAATAAATTTTTATACCCTAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGTGGCTGGGCCGGGGGAAATGGCGGCTCCAGGGGAGAGTGGGGCTTCGGGTGGCGGA
GGCAGCACAGAGGAAGCTTTTATGACCTTCTACAGCGAGGTGAAACAAATAGAGAAGAGA
GATTCGGTTCTAACGTCTAAAAATCAGATTGAAAGATTGACTCGTCCTGGTTCCTCCTAC
TTCAACTTGAACCCATTTGAGGTTCTTCAGATAGATCCTGAAGTGACAGATGAAGAAATA
AAAAAGAGGTTTCGGCAGCTATCCATACTGGTGCATCCTGACAAAAATCAAGATGATGCT
GACAGAGCACAAAAGGCTTTTGAAGCTGTGGACAAAGCTTACAAGTTGCTACTGGATCAG
GAACAAAAGAAGAGGGCCCTGGATGTAATTCAGGCAGGAAAAGAATACGTGGAACACACC
GTGAAAGAGCGAAAAAAGCAATTAAAGAAGGAAGGAAAGCCTACAAATGTGGAGGAAGAT
GATCCTGAGCTGTTTAAACAAGCAGTATACAAACAGACCATGAAACTCTTTGCTGAGCTG
GAAATTAAAAGGAAAGAAAGAGAAGCCAAGGAGATGCATGAAAGGAAGCGACAAAGGGAA
GAAGAGATTGAAGCTCAAGAAAAAGCCAAACGAGAAAGGGAGTGGCAGAAAAATTTTGAG
GAAAGTCGAGATGGTCGTGTGGACAGCTGGCGAAACTTCCAAGCTAATACCAAGGGGAAG
AAAGAGAAGAAGAACCGGACCTTCCTGAGACCACCAAAAGTAAAAATGGAACAGCGTGAG
TGACCTGAGGTCACTGCCACAGAACCTTCCTTCGGCTCTCCCCTTCCTGCTCTGAAGGAC
TCATTCTTTTTCCCATTTTCACCCCAACATAGAGTAGTCTTTGCTTTTTAGTCCATTTTG
TTTTCAATACAATTTAATATCGATCAGAGTAATTCTTTTGTACATTGAAATGAGGGGCTC
GGTTTAAAAAGAAACCTCCCCCACCCCTACCCCAGACCAACCAGGATCAGAAGGTGCCGC
CGTTGGTGCTGCCTTCTCCTCCCACAGCCTGTAACTTAATGTTTTGTACTCCACTCAATT
GTGATGGTTAGAAACTTTGTGTATAGTTTGTGGAAATCATCCAGTTAATTAAACACGTTG
CTTAAAATGGTGTTGCCTTGACTTCAGAGACAAGCCCGGGCCACCTTAGGAAGCCCCTTT
GCTTCAGTTGCTTGCTTCTGGGTGTGGCATCCTTCCAAGCCCCAGATCAGACGGGGAAGG
CAGTGGGCACACAGAGCAGCCACTCGATGCCCTGACGTCCCCTGGAGTTTGGCATGTGCT
TTCCTATCCGGCCAGTCTGCGTGGCACGAGGCTGCAAGCCACCCAAACCTGTTCACTTTC
CAAAGAGCTGGCCATTCTCCATCGTGTACCGTTGTGTCCTAGCCTGTCTGCATTTGTTAG
TGGTAATATTCTGTATGTGTAATAAATTTTTATACCCTAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               DNJC8_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               DNJC8_RAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               640-867, - strand, RNAz p=0.999042
               

               
               948-1064, - strand, RNAz p=0.998852

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               640-867, - strand, RNAz p=0.999042
               

               
               948-1064, - strand, RNAz p=0.998852

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1488, gnl|bosTau2|chr2 (77503106-77501630)
               

               
               1-1488, gnl|Hg17|chr14 (34968707-34970300)
               

               
               1-1488, gnl|Mm7|chr12 (10760273-10758840)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1488, gnl|bosTau2|chr2 (77503106-77501630)
               

               
               1-1488, gnl|Hg17|chr14 (34968707-34970300)
               

               
               1-1488, gnl|Mm7|chr12 (10760273-10758840)

Expressed library(ies): 32 entry(ies)

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Expressed library(ies): 32 entry(ies)

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               che (0.545256)
               

               
               pro (0.512033)
               

               
               hea (0.408998)
               

               
               fty (0.351679)
               

               
               nca (0.273748)
               

               
               fce (0.271592)
               

               
               sug (0.254582)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               mgp (0.230681)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               nbm (0.198649)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               eli (0.151814)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 32 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.545256)
               

               
               pro (0.512033)
               

               
               hea (0.408998)
               

               
               fty (0.351679)
               

               
               nca (0.273748)
               

               
               fce (0.271592)
               

               
               sug (0.254582)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               mgp (0.230681)
               

               
               ecc (0.23007)
               

               
               ece (0.229305)
               

               
               nbm (0.198649)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               eli (0.151814)
               

               
               hyp (0.142837)
               

               
               cst (0.140036)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	640-867, - strand, RNAz p=0.999042
	948-1064, - strand, RNAz p=0.998852

	1-1488, gnl\|bosTau2\|chr2 (77503106-77501630)
	1-1488, gnl\|Hg17\|chr14 (34968707-34970300)
	1-1488, gnl\|Mm7\|chr12 (10760273-10758840)

	che (0.545256)
	pro (0.512033)
	hea (0.408998)
	fty (0.351679)
	nca (0.273748)
	fce (0.271592)
	sug (0.254582)
	bla (0.248694)
	cbe (0.239234)
	ebs (0.236602)
	mgp (0.230681)
	ecc (0.23007)
	ece (0.229305)
	nbm (0.198649)
	nlu (0.191681)
	cmu (0.186393)
	nep (0.183925)
	fbs (0.175346)
	mcp (0.170648)
	fhi (0.169578)
	cki (0.165235)
	cje (0.165235)
	eli (0.151814)
	hyp (0.142837)
	cst (0.140036)
	cly (0.120642)
	eru (0.120048)
	clu (0.119646)
	spc (0.113366)
	jej (0.0989218)
	eje (0.0988338)
	ldo (0.0970026)