Ss1.1-Tra1-TCH01E010076.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGCCTGCTGGACGCTGGATTGGGAGGCAGCAGAAAAAGCCCTGGTGCTCGCAGGAGCCC CTCAGTGCACGGACCTAGGCTGGGCGTGGAGCTGCAGCGCACCCACAGGCCCCGGGATGC AGGCCCTCGTGCTACTCCTCTGGACTGGAGCCCTCCTCGGGTCTGGCAGCTGCCAGAACG CTGGCCCGGAGGAGGGCTCCCCGGCCCCTGACACGGTGGGGGCGCCAGTGGAGGAGGAGG ATCCCTTCTTCAAGGTCCCTGTGAACAAGCTGGCGGCGGCCGTCTCCAACTTTGGTTACG ACCTGTACCGAGTGAGATCCAGCGAGAGCCCCACCGCCAACGTGCTCCTGTCTCCCCTCA GCGTGGCCACGGCGCTCTCTGCCCTGTCTCTGGGAGCCGAACAGCGGACAGAATCCAGCC TCCACCGGGCTCTCTACTATGACCTGATCAGCAACCCGGACCTCCACGGCACCTACAAGG AGCTCCTTGCTGCCGTCACTGCCCCCCAGAAGAACCTCAAGAGTGCTTCCCGGATCATCT TTGAGAAGAAGCTGCGGATAAAAGCCAGCTTTGTTGCACCCCTGGAAAAGTCATACGGGA CCAGGCCCAGAATTCTGACCGGCAACTCCCGCTTGGACCTTCAGGAGGTTAACAACTGGG TGCAGGCTCAGACGAAAGGGAAAGTCGCCAGGTCCACGCGGGAACTGCCCGGCGAAATCA GCATCCTCCTTCTTGGTGTGGCTTACTTCAAGGGGCAGTGGGTAACCAAGTTTGACTCCA GGAAGACGTCGCTGGAGGATTTCCACTTGGATGAGGAGAGAACCGTGAAGGTGCCCATGA TGTCAGACCCTAAGGCCGTTTTACGCTACGGCTTGGATTCTGATCTCAACTGCAAGATCG CCCAGCTGCCCTTGACCGGAAGCATGAGTATCATCTTCTTCCTGCCTCTGAAAGTGACCC AGAACCTGACCATGATAGAAGAGAGCCTCACCTCTGAGTTCATTCACGACATAGACCGAG AACTGAAGACGGTTCAAGCGGTCCTGACCGTCCCCAAGCTGAAACTGAGTTACGAAGGCG AACTCACGAAGTCTGTGCAGGAACTGAAGCTGCAATCCTTGTTTGATTCACCAGACTTTA GCAAGATCACGGGCAAACCTATCAAACTTACTCAAGTGGAACATCGCATTGGCTTTGAGT GGAACGAGGATGGGGGAAGCGCCACCTCCAGCCCAGGGCCCCGCCTCACCTTCCCCCTGG ACTATCACCTTAACCAGCCTTTCATCTTTGTACTGAGGGACACAGACACAGGAGCCCTTC TCTTCATAGGCAAGATTCTGGACCCCAGGAGCACTTAATGCTCTAGTTTAATGTTCAAAT ATCCCAGAAGAAGAAAACTCTAGACAGATGGCAGATTATATATTACACGAAAGCTGCACA TATGTTTCAATGTATACTTTGCAATAAAAGTGCTTTATCCTTAACTTTAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGCCTGCTGGACGCTGGATTGGGAGGCAGCAGAAAAAGCCCTGGTGCTCGCAGGAGCCC CTCAGTGCACGGACCTAGGCTGGGCGTGGAGCTGCAGCGCACCCACAGGCCCCGGGATGC AGGCCCTCGTGCTACTCCTCTGGACTGGAGCCCTCCTCGGGTCTGGCAGCTGCCAGAACG CTGGCCCGGAGGAGGGCTCCCCGGCCCCTGACACGGTGGGGGCGCCAGTGGAGGAGGAGG ATCCCTTCTTCAAGGTCCCTGTGAACAAGCTGGCGGCGGCCGTCTCCAACTTTGGTTACG ACCTGTACCGAGTGAGATCCAGCGAGAGCCCCACCGCCAACGTGCTCCTGTCTCCCCTCA GCGTGGCCACGGCGCTCTCTGCCCTGTCTCTGGGAGCCGAACAGCGGACAGAATCCAGCC TCCACCGGGCTCTCTACTATGACCTGATCAGCAACCCGGACCTCCACGGCACCTACAAGG AGCTCCTTGCTGCCGTCACTGCCCCCCAGAAGAACCTCAAGAGTGCTTCCCGGATCATCT TTGAGAAGAAGCTGCGGATAAAAGCCAGCTTTGTTGCACCCCTGGAAAAGTCATACGGGA CCAGGCCCAGAATTCTGACCGGCAACTCCCGCTTGGACCTTCAGGAGGTTAACAACTGGG TGCAGGCTCAGACGAAAGGGAAAGTCGCCAGGTCCACGCGGGAACTGCCCGGCGAAATCA GCATCCTCCTTCTTGGTGTGGCTTACTTCAAGGGGCAGTGGGTAACCAAGTTTGACTCCA GGAAGACGTCGCTGGAGGATTTCCACTTGGATGAGGAGAGAACCGTGAAGGTGCCCATGA TGTCAGACCCTAAGGCCGTTTTACGCTACGGCTTGGATTCTGATCTCAACTGCAAGATCG CCCAGCTGCCCTTGACCGGAAGCATGAGTATCATCTTCTTCCTGCCTCTGAAAGTGACCC AGAACCTGACCATGATAGAAGAGAGCCTCACCTCTGAGTTCATTCACGACATAGACCGAG AACTGAAGACGGTTCAAGCGGTCCTGACCGTCCCCAAGCTGAAACTGAGTTACGAAGGCG AACTCACGAAGTCTGTGCAGGAACTGAAGCTGCAATCCTTGTTTGATTCACCAGACTTTA GCAAGATCACGGGCAAACCTATCAAACTTACTCAAGTGGAACATCGCATTGGCTTTGAGT GGAACGAGGATGGGGGAAGCGCCACCTCCAGCCCAGGGCCCCGCCTCACCTTCCCCCTGG ACTATCACCTTAACCAGCCTTTCATCTTTGTACTGAGGGACACAGACACAGGAGCCCTTC TCTTCATAGGCAAGATTCTGGACCCCAGGAGCACTTAATGCTCTAGTTTAATGTTCAAAT ATCCCAGAAGAAGAAAACTCTAGACAGATGGCAGATTATATATTACACGAAAGCTGCACA TATGTTTCAATGTATACTTTGCAATAAAAGTGCTTTATCCTTAACTTTAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-109, gnl|bosTau2|chr19 (17384673-17384781) | |
| 1-109, gnl|Hg17|chr17 (1612041-1612158) | |
| 1-109, gnl|Mm7|chr11 (75504166-75504069) | |
| 193-394, gnl|bosTau2|chr19 (17390188-17390389) | |
| 193-394, gnl|Hg17|chr17 (1619874-1620095) | |
| 193-394, gnl|Mm7|chr11 (75498004-75497803) | |
| 536-754, gnl|bosTau2|chr19 (17391569-17391786) | |
| 536-754, gnl|Hg17|chr17 (1621903-1622120) | |
| 536-754, gnl|Mm7|chr11 (75496712-75496494) | |
| 895-1107, gnl|bosTau2|chr19 (17395265-17395477) | |
| 895-1107, gnl|canFam2|chr9 (49226719-49226897) | |
| 895-1107, gnl|dasNov1|scaffold_87397 (3657-3479) | |
| 895-1107, gnl|galGal2|chr19 (5098825-5099003) | |
| 895-1107, gnl|hg17|chr17 (1626574-1626752) | |
| 895-1107, gnl|Hg17|chr17 (1626574-1626786) | |
| 895-1107, gnl|loxAfr1|scaffold_4372 (67059-66881) | |
| 895-1107, gnl|mm7|chr11 (75492622-75492444) | |
| 895-1107, gnl|Mm7|chr11 (75492620-75492408) | |
| 895-1107, gnl|monDom2|scaffold_86 (2970209-2970387) | |
| 895-1107, gnl|oryCun1|scaffold_200944 (134796-134972) | |
| 895-1107, gnl|panTro1|chr19 (1770051-1770229) | |
| 895-1107, gnl|rheMac2|chr16 (1573907-1574085) | |
| 895-1107, gnl|rn3|chr10 (62727892-62727714) | |
| 895-1107, gnl|tetNig1|chr7 (9880840-9881018) | |
| 895-1107, gnl|xenTro1|scaffold_50 (2900934-2900756) | |
| 1108-1488, gnl|bosTau2|chr19 (17396141-17396530) | |
| 1108-1488, gnl|Hg17|chr17 (1627231-1627613) | |
| 1108-1488, gnl|Mm7|chr11 (75491967-75491599) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-109, gnl|bosTau2|chr19 (17384673-17384781) | |
| 1-109, gnl|Hg17|chr17 (1612041-1612158) | |
| 1-109, gnl|Mm7|chr11 (75504166-75504069) | |
| 193-394, gnl|bosTau2|chr19 (17390188-17390389) | |
| 193-394, gnl|Hg17|chr17 (1619874-1620095) | |
| 193-394, gnl|Mm7|chr11 (75498004-75497803) | |
| 536-754, gnl|bosTau2|chr19 (17391569-17391786) | |
| 536-754, gnl|Hg17|chr17 (1621903-1622120) | |
| 536-754, gnl|Mm7|chr11 (75496712-75496494) | |
| 895-1107, gnl|bosTau2|chr19 (17395265-17395477) | |
| 895-1107, gnl|canFam2|chr9 (49226719-49226897) | |
| 895-1107, gnl|dasNov1|scaffold_87397 (3657-3479) | |
| 895-1107, gnl|galGal2|chr19 (5098825-5099003) | |
| 895-1107, gnl|hg17|chr17 (1626574-1626752) | |
| 895-1107, gnl|Hg17|chr17 (1626574-1626786) | |
| 895-1107, gnl|loxAfr1|scaffold_4372 (67059-66881) | |
| 895-1107, gnl|mm7|chr11 (75492622-75492444) | |
| 895-1107, gnl|Mm7|chr11 (75492620-75492408) | |
| 895-1107, gnl|monDom2|scaffold_86 (2970209-2970387) | |
| 895-1107, gnl|oryCun1|scaffold_200944 (134796-134972) | |
| 895-1107, gnl|panTro1|chr19 (1770051-1770229) | |
| 895-1107, gnl|rheMac2|chr16 (1573907-1574085) | |
| 895-1107, gnl|rn3|chr10 (62727892-62727714) | |
| 895-1107, gnl|tetNig1|chr7 (9880840-9881018) | |
| 895-1107, gnl|xenTro1|scaffold_50 (2900934-2900756) | |
| 1108-1488, gnl|bosTau2|chr19 (17396141-17396530) | |
| 1108-1488, gnl|Hg17|chr17 (1627231-1627613) | |
| 1108-1488, gnl|Mm7|chr11 (75491967-75491599) |
| Expressed library(ies): 48 entry(ies) | More info |
| Expressed library(ies): 48 entry(ies) | Help | Less info |
| amn (2.92398) | |
| csk (1.8297) | |
| jca (1.25356) | |
| cli (1.06968) | |
| nca (0.958117) | |
| fat (0.884564) | |
| ski (0.880411) | |
| eli (0.759071) | |
| med (0.697512) | |
| fli (0.608643) | |
| cly (0.603209) | |
| nlu (0.575043) | |
| nep (0.36785) | |
| eep (0.367692) | |
| sag (0.36543) | |
| eru (0.360144) | |
| rec (0.346141) | |
| vin (0.332557) | |
| cty (0.31224) | |
| lun (0.300978) | |
| lnt (0.284616) | |
| ssp (0.271039) | |
| ste (0.270416) | |
| nmm (0.265604) | |
| ret (0.257467) | |
| ese (0.253004) | |
| nms (0.213858) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| aor (0.195274) | |
| sto (0.179824) | |
| gul (0.177588) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| cki (0.165235) | |
| nco (0.161734) | |
| bfe (0.149858) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| che (0.136314) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| cov (0.132153) | |
| ova (0.129132) | |
| bla (0.124347) | |
| ldo (0.0970026) |
| Expressed library(ies): 48 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (2.92398) | |
| csk (1.8297) | |
| jca (1.25356) | |
| cli (1.06968) | |
| nca (0.958117) | |
| fat (0.884564) | |
| ski (0.880411) | |
| eli (0.759071) | |
| med (0.697512) | |
| fli (0.608643) | |
| cly (0.603209) | |
| nlu (0.575043) | |
| nep (0.36785) | |
| eep (0.367692) | |
| sag (0.36543) | |
| eru (0.360144) | |
| rec (0.346141) | |
| vin (0.332557) | |
| cty (0.31224) | |
| lun (0.300978) | |
| lnt (0.284616) | |
| ssp (0.271039) | |
| ste (0.270416) | |
| nmm (0.265604) | |
| ret (0.257467) | |
| ese (0.253004) | |
| nms (0.213858) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| aor (0.195274) | |
| sto (0.179824) | |
| gul (0.177588) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| cki (0.165235) | |
| nco (0.161734) | |
| bfe (0.149858) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| che (0.136314) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| cov (0.132153) | |
| ova (0.129132) | |
| bla (0.124347) | |
| ldo (0.0970026) |