Ss1.1-Tra1-TCH01E020065.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTTTTTTTTTAGAGGCACTGGTTTTATTGTCTTTGAGGGGCCTAGAA AGGGTTGGGTCCCGAGGAGCAACAGGGGCAGGAGTTAAGGAAGAACCGCGTGGCCATGGC CTTAGCTGGTGGGCATCTGGGGTGCCTCAGCTTGCGGGTGCCCATTGGCGTCGCCAGTAC AGCCATTGGTGGTGGGCGCTGGTCCTTTCTTGCAAGGCAGGGAGCAAGCAGCAGTCACAA GCCCAACACGCTTGAGGCCAGGGCGCTCCATCTTGTGCTCCAGAAGCATGTGGTTCTGCG GCGGGAGCCCCAGGCAGGCCCTGAGGATGTTCTCGATGCAGCTGCGCTGGCGGAAGAGCG CGTTGACCACGGGGCTGCCGGGCGGTGCAAGCGGCGCCTTGAAGAGGAAGCTGAGCAGCG ACAGCACCGGGTGGAAGGTCTGCGGCTCCGGGTCGGCGTCCGTGCAAAAGCTCACACGCT GGCAGAGTTCGGTCAGCAGCGCCAGGTCCAGCATGATGGGCGCGGCCAGGAGCGAGTCCT CGCACGTGTTGTGCAGCACCAGCGTGTTGGTACCGCCCAGCATCAGCTCCGATGTGTACT CATCCAGGGCACGCTTGCTGTCGCCCACGTATGGCACGTACTTGATGACCACGCAGTGGT CTGGCTCCTCGCCCTGCTTGTAGAGCACTGGGTTGCTGTGCACCATGTCATCCACCACAC TGCTCTTGGACACTTCTTTGGAGCGGAACTGTGGCGGCGCTGACAGGTTCTGCCCGTCGT TGTTGCCCAGGTGGTTGTAGCTCACGATGGACATGGTCTTTAAGCCAGAACCGATAAGGA AGTCCACAAGCACAGACTTGACCTTGGTCTGGCCGGACTTGAAGTCGTCTCCACCCACAA AGACGCGGCGCTGCCACGCGAGCTCGAGGGCACCAGGCACTAGTGTGTTCTGTGGGGACC CGTTGAGGAAGGCGCACCCCTCCAAGATGCTGGCGACGGCGAAGAGCGTGGAGGGCGACA CTTCCAGGCCCAGCTGGATGGTGCGCAGCAGGTTGTCAGCAGTGTCATTGAGGCCAGGCA CCACTTCGCAGAAGCGCTCTGTGTTCGCTGTCCACAGCACAATGACTTTGTCCAGGCCAG CGTTGGACCGGAAGTCACGGATGTCCCTGCGGATCTGCTCCAGCTGCTGCGCGCGCGTGC CCGGGATGAGGTTGTCAGCGCGCGCACTCTGGTTAGCTGCGATGAACTCCGGGATGTAGA CCGACGGCCGCGGGCGCAAGGCCTCCATGTGCGGCCACAGTTGCTCCTGCAGCTCCCAAT CTAGTACCTGCGCGCGCCTCATCGCCTCCGCCAGGTTCAGCGACGATATGTCCCAGCCGT CGAAAACGAGATCGTCGGGTGCCACCATGGGCAGCAGCGCGCTGAAGGGCACGAACACCT CCTGGCCCTCGGCGTCCAGGCCTAGGCTAACGGTGCCAGCCTGTGTCAGCGAGCCGTAGT AGTTGGCCTCCTTGCGGCCGGTGCGCGTAGGCCAGGACAGGCGCAGTCGGTTGGCCAGCA CGGCAGCGGTCAGCGTGGAGCCGTTGTTCCCGCCCCAGCCGACGAGCATGACCCCCAGCC GGGGCACCTGCCGGGCGGTCCGGAAAGTGAAGCGCGTGGACGTGGGATGCACTTTGAGGA CGCCAGCCTCGCGGCTGACGCACGTCGTCCTGTACTCGTACTTCGCCTCGATAGCCTCGG GGCTGTAGACCACGTCGGGGCTCTCCACCACGAACTCGGTTGCGGCCTCCATCGTGGTGA GCGGCGCAGAGTCGGCTGGAACTGCAGCGGACGGCTAGGGCTCGGGGCGCGCGAACTCGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTTTTTTTTTAGAGGCACTGGTTTTATTGTCTTTGAGGGGCCTAGAA AGGGTTGGGTCCCGAGGAGCAACAGGGGCAGGAGTTAAGGAAGAACCGCGTGGCCATGGC CTTAGCTGGTGGGCATCTGGGGTGCCTCAGCTTGCGGGTGCCCATTGGCGTCGCCAGTAC AGCCATTGGTGGTGGGCGCTGGTCCTTTCTTGCAAGGCAGGGAGCAAGCAGCAGTCACAA GCCCAACACGCTTGAGGCCAGGGCGCTCCATCTTGTGCTCCAGAAGCATGTGGTTCTGCG GCGGGAGCCCCAGGCAGGCCCTGAGGATGTTCTCGATGCAGCTGCGCTGGCGGAAGAGCG CGTTGACCACGGGGCTGCCGGGCGGTGCAAGCGGCGCCTTGAAGAGGAAGCTGAGCAGCG ACAGCACCGGGTGGAAGGTCTGCGGCTCCGGGTCGGCGTCCGTGCAAAAGCTCACACGCT GGCAGAGTTCGGTCAGCAGCGCCAGGTCCAGCATGATGGGCGCGGCCAGGAGCGAGTCCT CGCACGTGTTGTGCAGCACCAGCGTGTTGGTACCGCCCAGCATCAGCTCCGATGTGTACT CATCCAGGGCACGCTTGCTGTCGCCCACGTATGGCACGTACTTGATGACCACGCAGTGGT CTGGCTCCTCGCCCTGCTTGTAGAGCACTGGGTTGCTGTGCACCATGTCATCCACCACAC TGCTCTTGGACACTTCTTTGGAGCGGAACTGTGGCGGCGCTGACAGGTTCTGCCCGTCGT TGTTGCCCAGGTGGTTGTAGCTCACGATGGACATGGTCTTTAAGCCAGAACCGATAAGGA AGTCCACAAGCACAGACTTGACCTTGGTCTGGCCGGACTTGAAGTCGTCTCCACCCACAA AGACGCGGCGCTGCCACGCGAGCTCGAGGGCACCAGGCACTAGTGTGTTCTGTGGGGACC CGTTGAGGAAGGCGCACCCCTCCAAGATGCTGGCGACGGCGAAGAGCGTGGAGGGCGACA CTTCCAGGCCCAGCTGGATGGTGCGCAGCAGGTTGTCAGCAGTGTCATTGAGGCCAGGCA CCACTTCGCAGAAGCGCTCTGTGTTCGCTGTCCACAGCACAATGACTTTGTCCAGGCCAG CGTTGGACCGGAAGTCACGGATGTCCCTGCGGATCTGCTCCAGCTGCTGCGCGCGCGTGC CCGGGATGAGGTTGTCAGCGCGCGCACTCTGGTTAGCTGCGATGAACTCCGGGATGTAGA CCGACGGCCGCGGGCGCAAGGCCTCCATGTGCGGCCACAGTTGCTCCTGCAGCTCCCAAT CTAGTACCTGCGCGCGCCTCATCGCCTCCGCCAGGTTCAGCGACGATATGTCCCAGCCGT CGAAAACGAGATCGTCGGGTGCCACCATGGGCAGCAGCGCGCTGAAGGGCACGAACACCT CCTGGCCCTCGGCGTCCAGGCCTAGGCTAACGGTGCCAGCCTGTGTCAGCGAGCCGTAGT AGTTGGCCTCCTTGCGGCCGGTGCGCGTAGGCCAGGACAGGCGCAGTCGGTTGGCCAGCA CGGCAGCGGTCAGCGTGGAGCCGTTGTTCCCGCCCCAGCCGACGAGCATGACCCCCAGCC GGGGCACCTGCCGGGCGGTCCGGAAAGTGAAGCGCGTGGACGTGGGATGCACTTTGAGGA CGCCAGCCTCGCGGCTGACGCACGTCGTCCTGTACTCGTACTTCGCCTCGATAGCCTCGG GGCTGTAGACCACGTCGGGGCTCTCCACCACGAACTCGGTTGCGGCCTCCATCGTGGTGA GCGGCGCAGAGTCGGCTGGAACTGCAGCGGACGGCTAGGGCTCGGGGCGCGCGAACTCGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 67-1119, gnl|bosTau2|chr9 (13496551-13495489) | |
| 67-1119, gnl|Hg17|chr19 (18406670-18408225) | |
| 67-1119, gnl|Mm7|chr8 (69052402-69050909) | |
| 320-540, gnl|bosTau2|chr7 (1890350-1890570) | |
| 320-540, gnl|Hg17|chr19 (18407075-18407295) | |
| 320-540, gnl|Mm7|chr8 (69052052-69051832) | |
| 818-1036, gnl|bosTau2|chr7 (1891120-1891338) | |
| 818-1036, gnl|canFam2|chr20 (47599091-47598852) | |
| 818-1036, gnl|echTel1|scaffold_248061 (2047-1804) | |
| 818-1036, gnl|fr1|chrUn (190665972-190666186) | |
| 818-1036, gnl|hg17|chr19 (18407835-18408073) | |
| 818-1036, gnl|Hg17|chr19 (18407842-18408060) | |
| 818-1036, gnl|loxAfr1|scaffold_166495 (924-681) | |
| 818-1036, gnl|mm7|chr8 (69051316-69051077) | |
| 818-1036, gnl|Mm7|chr8 (69051305-69051087) | |
| 818-1036, gnl|monDom2|scaffold_191 (1306181-1306020) | |
| 818-1036, gnl|panTro1|chr20 (19434009-19434247) | |
| 818-1036, gnl|rheMac2|chr19 (18042569-18042807) | |
| 818-1036, gnl|rn3|chr16 (19346431-19346671) | |
| 818-1036, gnl|tetNig1|chr10 (8658024-8657810) | |
| 818-1036, gnl|xenTro1|scaffold_797 (24992-24760) | |
| 1177-1305, gnl|bosTau2|chr7 (1891747-1891875) | |
| 1177-1305, gnl|canFam2|chr20 (47598271-47598463) | |
| 1177-1305, gnl|echTel1|scaffold_248061 (1193-1387) | |
| 1177-1305, gnl|fr1|chrUn (190667193-190666999) | |
| 1177-1305, gnl|Hg17|chr19 (18408487-18408615) | |
| 1177-1305, gnl|hg17|chr4 (25183306-25183499) | |
| 1177-1305, gnl|loxAfr1|scaffold_166495 (27-224) | |
| 1177-1305, gnl|mm7|chr8 (69050501-69050695) | |
| 1177-1305, gnl|Mm7|chr8 (69050701-69050575) | |
| 1177-1305, gnl|panTro1|chr3 (25757632-25757825) | |
| 1177-1305, gnl|rheMac2|chr5 (20264182-20264377) | |
| 1177-1305, gnl|rn3|chr16 (19347223-19347029) | |
| 1177-1305, gnl|tetNig1|chr10 (8656792-8656986) | |
| 1177-1305, gnl|xenTro1|scaffold_797 (23432-23626) | |
| 1507-1687, gnl|bosTau2|chr7 (1892499-1892679) | |
| 1507-1687, gnl|canFam2|chr20 (47597585-47597744) | |
| 1507-1687, gnl|echTel1|scaffold_248061 (374-533) | |
| 1507-1687, gnl|fr1|chrUn (190668232-190668076) | |
| 1507-1687, gnl|Hg17|chr19 (18409405-18409585) | |
| 1507-1687, gnl|hg17|chr4 (25183012-25183175) | |
| 1507-1687, gnl|mm7|chr8 (69049967-69050126) | |
| 1507-1687, gnl|Mm7|chr8 (69050128-69049949) | |
| 1507-1687, gnl|panTro1|chr3 (25757361-25757501) | |
| 1507-1687, gnl|rheMac2|chr5 (20263888-20264051) | |
| 1507-1687, gnl|rn3|chr16 (19347765-19347606) | |
| 1507-1687, gnl|tetNig1|chr10 (8655964-8656080) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 67-1119, gnl|bosTau2|chr9 (13496551-13495489) | |
| 67-1119, gnl|Hg17|chr19 (18406670-18408225) | |
| 67-1119, gnl|Mm7|chr8 (69052402-69050909) | |
| 320-540, gnl|bosTau2|chr7 (1890350-1890570) | |
| 320-540, gnl|Hg17|chr19 (18407075-18407295) | |
| 320-540, gnl|Mm7|chr8 (69052052-69051832) | |
| 818-1036, gnl|bosTau2|chr7 (1891120-1891338) | |
| 818-1036, gnl|canFam2|chr20 (47599091-47598852) | |
| 818-1036, gnl|echTel1|scaffold_248061 (2047-1804) | |
| 818-1036, gnl|fr1|chrUn (190665972-190666186) | |
| 818-1036, gnl|hg17|chr19 (18407835-18408073) | |
| 818-1036, gnl|Hg17|chr19 (18407842-18408060) | |
| 818-1036, gnl|loxAfr1|scaffold_166495 (924-681) | |
| 818-1036, gnl|mm7|chr8 (69051316-69051077) | |
| 818-1036, gnl|Mm7|chr8 (69051305-69051087) | |
| 818-1036, gnl|monDom2|scaffold_191 (1306181-1306020) | |
| 818-1036, gnl|panTro1|chr20 (19434009-19434247) | |
| 818-1036, gnl|rheMac2|chr19 (18042569-18042807) | |
| 818-1036, gnl|rn3|chr16 (19346431-19346671) | |
| 818-1036, gnl|tetNig1|chr10 (8658024-8657810) | |
| 818-1036, gnl|xenTro1|scaffold_797 (24992-24760) | |
| 1177-1305, gnl|bosTau2|chr7 (1891747-1891875) | |
| 1177-1305, gnl|canFam2|chr20 (47598271-47598463) | |
| 1177-1305, gnl|echTel1|scaffold_248061 (1193-1387) | |
| 1177-1305, gnl|fr1|chrUn (190667193-190666999) | |
| 1177-1305, gnl|Hg17|chr19 (18408487-18408615) | |
| 1177-1305, gnl|hg17|chr4 (25183306-25183499) | |
| 1177-1305, gnl|loxAfr1|scaffold_166495 (27-224) | |
| 1177-1305, gnl|mm7|chr8 (69050501-69050695) | |
| 1177-1305, gnl|Mm7|chr8 (69050701-69050575) | |
| 1177-1305, gnl|panTro1|chr3 (25757632-25757825) | |
| 1177-1305, gnl|rheMac2|chr5 (20264182-20264377) | |
| 1177-1305, gnl|rn3|chr16 (19347223-19347029) | |
| 1177-1305, gnl|tetNig1|chr10 (8656792-8656986) | |
| 1177-1305, gnl|xenTro1|scaffold_797 (23432-23626) | |
| 1507-1687, gnl|bosTau2|chr7 (1892499-1892679) | |
| 1507-1687, gnl|canFam2|chr20 (47597585-47597744) | |
| 1507-1687, gnl|echTel1|scaffold_248061 (374-533) | |
| 1507-1687, gnl|fr1|chrUn (190668232-190668076) | |
| 1507-1687, gnl|Hg17|chr19 (18409405-18409585) | |
| 1507-1687, gnl|hg17|chr4 (25183012-25183175) | |
| 1507-1687, gnl|mm7|chr8 (69049967-69050126) | |
| 1507-1687, gnl|Mm7|chr8 (69050128-69049949) | |
| 1507-1687, gnl|panTro1|chr3 (25757361-25757501) | |
| 1507-1687, gnl|rheMac2|chr5 (20263888-20264051) | |
| 1507-1687, gnl|rn3|chr16 (19347765-19347606) | |
| 1507-1687, gnl|tetNig1|chr10 (8655964-8656080) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| eli (1.51814) | |
| fli (1.21729) | |
| cov (1.05722) | |
| ese (0.885516) | |
| ute (0.531138) | |
| fbs (0.526039) | |
| elu (0.385356) | |
| eru (0.240096) | |
| nms (0.213858) | |
| eje (0.197668) | |
| csp (0.161186) | |
| pty (0.142714) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eli (1.51814) | |
| fli (1.21729) | |
| cov (1.05722) | |
| ese (0.885516) | |
| ute (0.531138) | |
| fbs (0.526039) | |
| elu (0.385356) | |
| eru (0.240096) | |
| nms (0.213858) | |
| eje (0.197668) | |
| csp (0.161186) | |
| pty (0.142714) |