Ss1.1-Tra1-TCH01E020076.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTGACTGCCTAGCCCCGGCGCCCCAGAGCAACCATGGAGCGGCAGGTGCTGCTGAGCGA GCCCGAAGAGGCGGCGGCGCTGTACCGGGGCCTTAGCCGCCAGCCCGCGCTGAGCGCCGC CTGCCTGGGCCCAGAGGTCACCACGCAGTACGGGGGTCGCTACCGGACTGTGCACACTGA GTGGACCCAGAGGGACCTGGAACGCATGGAGAACATCCGATTCTGCCGCCAGTACCTGGT GTTCCATGATGGGGACTCAGTGGTGTTTGCAGGGCCTGCAGGCAACAGTGTGGAGACCCG GGGGGAGCTGCTGAGCAGAGAGTCTCCTTCAGGCACCATGAAAGCCGTGCTGCGCAAGGC TGGAGGCACGGGCACTGCGGAGGAGAAGCAGTTTTTGGAGGTCTGGGAGAAGAACCGGAA GCTCAAGAGCTTCAACCTGTCAGCGCTGGAGAAACATGGGCCGGTTTATGAGGACGACTG CTTTGGCTGCTTGTCCTGGTCGCACTCGGAGACACACTTATTATATGTGGCAGAGAAGAA GCGCCCCAAGGCTGAGTCGTTCTTTCAGACCAAAGCCCTGGACGTCACTGGCAGCGATGA TGAGATGGCCAGGACAAAGAAGCCAGACCAGGCCATTAAGGGGGATCAGTTTTTGTTTTA CGAAGATTGGGGAGAAAACATGGTTTCCAAAAGTACTCCTGTGCTCTGCGTGCTGGATAT TGAGAGCGGCAACATCTCTGTGCTTGAGGGGGTTCCTGAGAGTGTGTCCCCTGGACAGGC ATTCTGGGCCCCTGGAGACACAGGTGTGGTGTTCGTGGGCTGGTGGCATGAGCCCTTCCG GCTGGGCATTCGCTTCTGTACCAATCGAAGGTCAGCCCTGTACTATGTAGACCTCACTGG GGGGAAGTGTGAGCTCCTCTCAGATGAGTCTGTGGCTGTCACATCTCCCCGGCTAAGTCC AGATCAATGTCGCATCGTCTACCTGCGGTTCCCATCTCTGGTCCCCCATCAACAGTGTGG CCAGTTGTGCCTGTATGACTGGTATACCAGGGTCACCTCGGTGGTGGTGGACATTGTGCC TCGGCAGCTGGGAGAGGACTTCTCTGGGATCTACTGCAGCCTTCTGCCTCTGGGATGCTG GTCAGCTGACAGCCAGAGAGTGGTTTTTGACTCACCTCAGCGCAGCCGGCAGGACCTGTT TGCTGTGGACACCCAGATGGGCAGTGTGACCTCTTTAACGGCTGGGGGGTCAGGTGGAAG CTGGAAGTTGCTCACAATTGACCGGGACCTCATGGTGGTGCAGTTCTCCACGCCCAGTGT ACCCCCAAGCCTGAAAGTTGGGTTCCTGCCTCCGGCCGGGAAGGAGCAGGCGGTATCATG GGTATCCCTGGAGGAGGCCGAGCCCTTTCCTGACATCTCTTGGAGCATCCGGGTACTACA GCCACCCCCACAGCAAGAGCATGTGCAGTATGCTGGCCTTGACTTTGAAGCAATCCTTCT ACAGCCCAGCAACTCTCCAGAGAAGACCCAGGTGCCCATGGTGGTCATGCCCCACGGGGG ACCCCATTCATCCTTTGTCACTGCCTGGATGCTGTTCCCAGCCATGCTTTGCAAGATGGG TTTTGCAGTACTACTAGTGAACTATCGTGGCTCCACCGGCTTTGGCCAAGACAGCATCCT TTCTCTCCCTGGCAATGTGGGCCACCAGGATGTGAAGGACGTCCAGTTTGCAGTAGAGCA GGTGCTCCAGGAGGAACACTTTGATGCAGGCCGTGTGGCCCTTATGGGTGGTTCCCATGG TGGCTTCCTCTCCTGCCACCTGATTGGTCAGTATCCAGAGACCTACAGTGCCTGCGTGGT GAGGAACCCTGTGATCAACATTGCCTCCATGATGGGCTCCACTGACATCCCTGACTGGTG CATGGTGGAGGCTGGCTTCTCCTACAGCAGCGACTGCCTGCCAGACCTCAGTGTGTGGGC TGCGATGCTGGACAAGTCACCCATCAAGTATGCCCCTCAGGTGAAGACTCCACTGTTACT GATGCTAGGCCAGGAGGACAGGCGTGTGCCCTTCAAGCAGGGCATGGAGTATTACCGTGT TCTCAAGGCCCGGAATGTGCCAGTCCGGCTCCTGCTTTATCCCAAAAGCACCCATGCACT ATCAGAGGTGGAGGTGGAATCAGACAGCTTCATGAATGCTGTGCTCTGGCTATGCACACA CTTGGGCAGCTGAAGCCCTATCTGTCTGCCTGAGCTGGGTGCCCACACTTGGCTCTTGGA GAGTCCCATGGTCTGGCAGAGCTGCAAGAGGCTTCCTGGGCTCTGGACTCCATGGATGGG TGAGCTGAGGAATGTGGGCTGTATACTCATAATAAATAAGGACACAGAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCTGGGGGGGGCC AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTGACTGCCTAGCCCCGGCGCCCCAGAGCAACCATGGAGCGGCAGGTGCTGCTGAGCGA GCCCGAAGAGGCGGCGGCGCTGTACCGGGGCCTTAGCCGCCAGCCCGCGCTGAGCGCCGC CTGCCTGGGCCCAGAGGTCACCACGCAGTACGGGGGTCGCTACCGGACTGTGCACACTGA GTGGACCCAGAGGGACCTGGAACGCATGGAGAACATCCGATTCTGCCGCCAGTACCTGGT GTTCCATGATGGGGACTCAGTGGTGTTTGCAGGGCCTGCAGGCAACAGTGTGGAGACCCG GGGGGAGCTGCTGAGCAGAGAGTCTCCTTCAGGCACCATGAAAGCCGTGCTGCGCAAGGC TGGAGGCACGGGCACTGCGGAGGAGAAGCAGTTTTTGGAGGTCTGGGAGAAGAACCGGAA GCTCAAGAGCTTCAACCTGTCAGCGCTGGAGAAACATGGGCCGGTTTATGAGGACGACTG CTTTGGCTGCTTGTCCTGGTCGCACTCGGAGACACACTTATTATATGTGGCAGAGAAGAA GCGCCCCAAGGCTGAGTCGTTCTTTCAGACCAAAGCCCTGGACGTCACTGGCAGCGATGA TGAGATGGCCAGGACAAAGAAGCCAGACCAGGCCATTAAGGGGGATCAGTTTTTGTTTTA CGAAGATTGGGGAGAAAACATGGTTTCCAAAAGTACTCCTGTGCTCTGCGTGCTGGATAT TGAGAGCGGCAACATCTCTGTGCTTGAGGGGGTTCCTGAGAGTGTGTCCCCTGGACAGGC ATTCTGGGCCCCTGGAGACACAGGTGTGGTGTTCGTGGGCTGGTGGCATGAGCCCTTCCG GCTGGGCATTCGCTTCTGTACCAATCGAAGGTCAGCCCTGTACTATGTAGACCTCACTGG GGGGAAGTGTGAGCTCCTCTCAGATGAGTCTGTGGCTGTCACATCTCCCCGGCTAAGTCC AGATCAATGTCGCATCGTCTACCTGCGGTTCCCATCTCTGGTCCCCCATCAACAGTGTGG CCAGTTGTGCCTGTATGACTGGTATACCAGGGTCACCTCGGTGGTGGTGGACATTGTGCC TCGGCAGCTGGGAGAGGACTTCTCTGGGATCTACTGCAGCCTTCTGCCTCTGGGATGCTG GTCAGCTGACAGCCAGAGAGTGGTTTTTGACTCACCTCAGCGCAGCCGGCAGGACCTGTT TGCTGTGGACACCCAGATGGGCAGTGTGACCTCTTTAACGGCTGGGGGGTCAGGTGGAAG CTGGAAGTTGCTCACAATTGACCGGGACCTCATGGTGGTGCAGTTCTCCACGCCCAGTGT ACCCCCAAGCCTGAAAGTTGGGTTCCTGCCTCCGGCCGGGAAGGAGCAGGCGGTATCATG GGTATCCCTGGAGGAGGCCGAGCCCTTTCCTGACATCTCTTGGAGCATCCGGGTACTACA GCCACCCCCACAGCAAGAGCATGTGCAGTATGCTGGCCTTGACTTTGAAGCAATCCTTCT ACAGCCCAGCAACTCTCCAGAGAAGACCCAGGTGCCCATGGTGGTCATGCCCCACGGGGG ACCCCATTCATCCTTTGTCACTGCCTGGATGCTGTTCCCAGCCATGCTTTGCAAGATGGG TTTTGCAGTACTACTAGTGAACTATCGTGGCTCCACCGGCTTTGGCCAAGACAGCATCCT TTCTCTCCCTGGCAATGTGGGCCACCAGGATGTGAAGGACGTCCAGTTTGCAGTAGAGCA GGTGCTCCAGGAGGAACACTTTGATGCAGGCCGTGTGGCCCTTATGGGTGGTTCCCATGG TGGCTTCCTCTCCTGCCACCTGATTGGTCAGTATCCAGAGACCTACAGTGCCTGCGTGGT GAGGAACCCTGTGATCAACATTGCCTCCATGATGGGCTCCACTGACATCCCTGACTGGTG CATGGTGGAGGCTGGCTTCTCCTACAGCAGCGACTGCCTGCCAGACCTCAGTGTGTGGGC TGCGATGCTGGACAAGTCACCCATCAAGTATGCCCCTCAGGTGAAGACTCCACTGTTACT GATGCTAGGCCAGGAGGACAGGCGTGTGCCCTTCAAGCAGGGCATGGAGTATTACCGTGT TCTCAAGGCCCGGAATGTGCCAGTCCGGCTCCTGCTTTATCCCAAAAGCACCCATGCACT ATCAGAGGTGGAGGTGGAATCAGACAGCTTCATGAATGCTGTGCTCTGGCTATGCACACA CTTGGGCAGCTGAAGCCCTATCTGTCTGCCTGAGCTGGGTGCCCACACTTGGCTCTTGGA GAGTCCCATGGTCTGGCAGAGCTGCAAGAGGCTTCCTGGGCTCTGGACTCCATGGATGGG TGAGCTGAGGAATGTGGGCTGTATACTCATAATAAATAAGGACACAGAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCTGGGGGGGGCC AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 524-2245, - strand, RNAz p=0.898668 | |
| 1313-1419, + strand, RNAz p=0.713095 | |
| 1725-1843, + strand, RNAz p=0.892691 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 524-2245, - strand, RNAz p=0.898668 | |
| 1313-1419, + strand, RNAz p=0.713095 | |
| 1725-1843, + strand, RNAz p=0.892691 |
| Aligned organism(s): 66 entry(ies) | More info |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
| 43-179, gnl|bosTau2|chr22 (38054800-38054936) | |
| 43-179, gnl|Hg17|chr3 (49686922-49687058) | |
| 43-179, gnl|Mm7|chr9 (107823938-107823802) | |
| 476-641, gnl|bosTau2|chr22 (38056253-38056418) | |
| 476-641, gnl|Hg17|chr3 (49688492-49688657) | |
| 476-641, gnl|Mm7|chr9 (107822293-107822128) | |
| 775-875, gnl|bosTau2|chr22 (38056814-38056914) | |
| 775-875, gnl|canFam2|chr20 (42594019-42593906) | |
| 775-875, gnl|danRer3|chr6 (10299778-10299888) | |
| 775-875, gnl|fr1|chrUn (52456738-52456625) | |
| 775-875, gnl|galGal2|chr12 (2194214-2194099) | |
| 775-875, gnl|hg17|chr3 (49689032-49689145) | |
| 775-875, gnl|Hg17|chr3 (49689042-49689142) | |
| 775-875, gnl|loxAfr1|scaffold_37867 (9051-9164) | |
| 775-875, gnl|mm7|chr9 (107821770-107821657) | |
| 775-875, gnl|Mm7|chr9 (107821758-107821658) | |
| 775-875, gnl|monDom2|scaffold_5 (75238497-75238383) | |
| 775-875, gnl|oryCun1|scaffold_191945 (29289-29170) | |
| 775-875, gnl|panTro1|chr2 (51223950-51224063) | |
| 775-875, gnl|rheMac2|chr2 (86744888-86744775) | |
| 775-875, gnl|rn3|chr8 (113379301-113379188) | |
| 775-875, gnl|tetNig1|chr9 (5121451-5121341) | |
| 775-875, gnl|xenTro1|scaffold_193 (1103955-1104087) | |
| 911-1033, gnl|bosTau2|chr22 (38057117-38057239) | |
| 911-1033, gnl|canFam2|chr20 (42593719-42593583) | |
| 911-1033, gnl|danRer3|chr6 (10301615-10301750) | |
| 911-1033, gnl|echTel1|scaffold_307443 (12515-12379) | |
| 911-1033, gnl|fr1|chrUn (52456352-52456208) | |
| 911-1033, gnl|galGal2|chr12 (2193927-2193796) | |
| 911-1033, gnl|hg17|chr3 (49689331-49689467) | |
| 911-1033, gnl|Hg17|chr3 (49689339-49689461) | |
| 911-1033, gnl|loxAfr1|scaffold_37867 (9347-9483) | |
| 911-1033, gnl|mm7|chr9 (107821473-107821339) | |
| 911-1033, gnl|Mm7|chr9 (107821465-107821343) | |
| 911-1033, gnl|monDom2|scaffold_5 (75237751-75237615) | |
| 911-1033, gnl|oryCun1|scaffold_191945 (28955-28819) | |
| 911-1033, gnl|panTro1|chr2 (51224249-51224385) | |
| 911-1033, gnl|rheMac2|chr2 (86744589-86744453) | |
| 911-1033, gnl|rn3|chr8 (113378994-113378860) | |
| 911-1033, gnl|tetNig1|chr9 (5121128-5120982) | |
| 911-1033, gnl|xenTro1|scaffold_193 (1104358-1104538) | |
| 1093-1193, gnl|bosTau2|chr22 (38058824-38058924) | |
| 1093-1193, gnl|Hg17|chr3 (49691287-49691387) | |
| 1093-1193, gnl|Mm7|chr9 (107819763-107819663) | |
| 1313-1475, gnl|bosTau2|chr22 (38060656-38060818) | |
| 1313-1475, gnl|canFam2|chr20 (42589639-42589456) | |
| 1313-1475, gnl|danRer3|chr6 (10307448-10307614) | |
| 1313-1475, gnl|echTel1|scaffold_307443 (9124-8948) | |
| 1313-1475, gnl|fr1|chrUn (52455484-52455327) | |
| 1313-1475, gnl|hg17|chr3 (49693510-49693694) | |
| 1313-1475, gnl|Hg17|chr3 (49693517-49693679) | |
| 1313-1475, gnl|loxAfr1|scaffold_37867 (13111-13295) | |
| 1313-1475, gnl|mm7|chr9 (107817466-107817282) | |
| 1313-1475, gnl|Mm7|chr9 (107817457-107817295) | |
| 1313-1475, gnl|monDom2|scaffold_5 (75228000-75227816) | |
| 1313-1475, gnl|panTro1|chr2 (51228428-51228612) | |
| 1313-1475, gnl|rheMac2|chr2 (86740141-86739957) | |
| 1313-1475, gnl|rn3|chr8 (113375052-113374870) | |
| 1313-1475, gnl|tetNig1|chr9 (5120232-5120085) | |
| 1313-1475, gnl|xenTro1|scaffold_193 (1107613-1107785) | |
| 1725-1920, gnl|bosTau2|chr22 (38062102-38062297) | |
| 1725-1920, gnl|Hg17|chr3 (49694981-49695176) | |
| 1725-1920, gnl|Mm7|chr9 (107815906-107815711) | |
| 2127-2388, gnl|bosTau2|chr22 (38062797-38063049) | |
| 2127-2388, gnl|Hg17|chr3 (49695673-49695940) | |
| 2127-2388, gnl|Mm7|chr9 (107815253-107814989) |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 43-179, gnl|bosTau2|chr22 (38054800-38054936) | |
| 43-179, gnl|Hg17|chr3 (49686922-49687058) | |
| 43-179, gnl|Mm7|chr9 (107823938-107823802) | |
| 476-641, gnl|bosTau2|chr22 (38056253-38056418) | |
| 476-641, gnl|Hg17|chr3 (49688492-49688657) | |
| 476-641, gnl|Mm7|chr9 (107822293-107822128) | |
| 775-875, gnl|bosTau2|chr22 (38056814-38056914) | |
| 775-875, gnl|canFam2|chr20 (42594019-42593906) | |
| 775-875, gnl|danRer3|chr6 (10299778-10299888) | |
| 775-875, gnl|fr1|chrUn (52456738-52456625) | |
| 775-875, gnl|galGal2|chr12 (2194214-2194099) | |
| 775-875, gnl|hg17|chr3 (49689032-49689145) | |
| 775-875, gnl|Hg17|chr3 (49689042-49689142) | |
| 775-875, gnl|loxAfr1|scaffold_37867 (9051-9164) | |
| 775-875, gnl|mm7|chr9 (107821770-107821657) | |
| 775-875, gnl|Mm7|chr9 (107821758-107821658) | |
| 775-875, gnl|monDom2|scaffold_5 (75238497-75238383) | |
| 775-875, gnl|oryCun1|scaffold_191945 (29289-29170) | |
| 775-875, gnl|panTro1|chr2 (51223950-51224063) | |
| 775-875, gnl|rheMac2|chr2 (86744888-86744775) | |
| 775-875, gnl|rn3|chr8 (113379301-113379188) | |
| 775-875, gnl|tetNig1|chr9 (5121451-5121341) | |
| 775-875, gnl|xenTro1|scaffold_193 (1103955-1104087) | |
| 911-1033, gnl|bosTau2|chr22 (38057117-38057239) | |
| 911-1033, gnl|canFam2|chr20 (42593719-42593583) | |
| 911-1033, gnl|danRer3|chr6 (10301615-10301750) | |
| 911-1033, gnl|echTel1|scaffold_307443 (12515-12379) | |
| 911-1033, gnl|fr1|chrUn (52456352-52456208) | |
| 911-1033, gnl|galGal2|chr12 (2193927-2193796) | |
| 911-1033, gnl|hg17|chr3 (49689331-49689467) | |
| 911-1033, gnl|Hg17|chr3 (49689339-49689461) | |
| 911-1033, gnl|loxAfr1|scaffold_37867 (9347-9483) | |
| 911-1033, gnl|mm7|chr9 (107821473-107821339) | |
| 911-1033, gnl|Mm7|chr9 (107821465-107821343) | |
| 911-1033, gnl|monDom2|scaffold_5 (75237751-75237615) | |
| 911-1033, gnl|oryCun1|scaffold_191945 (28955-28819) | |
| 911-1033, gnl|panTro1|chr2 (51224249-51224385) | |
| 911-1033, gnl|rheMac2|chr2 (86744589-86744453) | |
| 911-1033, gnl|rn3|chr8 (113378994-113378860) | |
| 911-1033, gnl|tetNig1|chr9 (5121128-5120982) | |
| 911-1033, gnl|xenTro1|scaffold_193 (1104358-1104538) | |
| 1093-1193, gnl|bosTau2|chr22 (38058824-38058924) | |
| 1093-1193, gnl|Hg17|chr3 (49691287-49691387) | |
| 1093-1193, gnl|Mm7|chr9 (107819763-107819663) | |
| 1313-1475, gnl|bosTau2|chr22 (38060656-38060818) | |
| 1313-1475, gnl|canFam2|chr20 (42589639-42589456) | |
| 1313-1475, gnl|danRer3|chr6 (10307448-10307614) | |
| 1313-1475, gnl|echTel1|scaffold_307443 (9124-8948) | |
| 1313-1475, gnl|fr1|chrUn (52455484-52455327) | |
| 1313-1475, gnl|hg17|chr3 (49693510-49693694) | |
| 1313-1475, gnl|Hg17|chr3 (49693517-49693679) | |
| 1313-1475, gnl|loxAfr1|scaffold_37867 (13111-13295) | |
| 1313-1475, gnl|mm7|chr9 (107817466-107817282) | |
| 1313-1475, gnl|Mm7|chr9 (107817457-107817295) | |
| 1313-1475, gnl|monDom2|scaffold_5 (75228000-75227816) | |
| 1313-1475, gnl|panTro1|chr2 (51228428-51228612) | |
| 1313-1475, gnl|rheMac2|chr2 (86740141-86739957) | |
| 1313-1475, gnl|rn3|chr8 (113375052-113374870) | |
| 1313-1475, gnl|tetNig1|chr9 (5120232-5120085) | |
| 1313-1475, gnl|xenTro1|scaffold_193 (1107613-1107785) | |
| 1725-1920, gnl|bosTau2|chr22 (38062102-38062297) | |
| 1725-1920, gnl|Hg17|chr3 (49694981-49695176) | |
| 1725-1920, gnl|Mm7|chr9 (107815906-107815711) | |
| 2127-2388, gnl|bosTau2|chr22 (38062797-38063049) | |
| 2127-2388, gnl|Hg17|chr3 (49695673-49695940) | |
| 2127-2388, gnl|Mm7|chr9 (107815253-107814989) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| nms (0.213858) | |
| col (0.195008) | |
| ton (0.1755) | |
| cli (0.152812) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| cov (0.132153) | |
| ese (0.126502) | |
| ecc (0.115035) | |
| nbm (0.0993246) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.213858) | |
| col (0.195008) | |
| ton (0.1755) | |
| cli (0.152812) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| cov (0.132153) | |
| ese (0.126502) | |
| ecc (0.115035) | |
| nbm (0.0993246) |