Ss1.1-Tra1-TCH01E030029.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAACCAAGCCTAAGAAGGGAAAGCCATGGCTGACAAGATCCTGAAGGAGAAGAGGAGGCT GTTTGTCCGTTCAGTGGCCATGGGTACGATCAATGGCCTCTTGGATGAACTATTAGAGAC CAGAGTCCTGAACCAGGAGGAGGTGGAGATAGTAAGAGGTGAAAACGCTACAGTTATGGA TAAGGCCCGAGCTTTGATTGACTCTGTTATTCGGAAAGGGCCCCAGGCATGCCAAATTTG CATCAATCATATTTGTGGAGACGACCCCCACCTTGCAGGAGTCCTCGAACTCTCCACAGG TTCACAATCTGGAAAATGCCTTACTGTACAAGAATCCCAGGCGGTGGTTCCTCCTTTCCC AGCCCCTCAGACAGTACAAGACAACCCAGTTAAGCCTGCATCTTCAGAGCCAAGAGGGAG CCTCAAGCTTTGCCCCCCAGACATAGCCCAAAGGCTATGGAAAGAAAAGTCAGCAGAGAT TTACCCAATAATGGAAAAATCAATTCGCACACGCCTTGCCCTCATAATCTGCAACACAGA GTTTGAAAATCTTCCCAGGAGAGATGGTGCTGATGTTGATATTAGAGACATGAAGATACT ACTAGAAGATTTGGGTTACAGTGTGGATGTTAGAGAAAATCTCACCGCTTCGGACATGGC TATAGAGCTGAAGGCATTTGCTGCCCGCCCAGAGCACAAGTCCTCTGATAGTACTTTTCT GGTGCTCATGTCTCATGGAATCCAGGCTGGCATTTGTGGGAAGAAATACTCCGAAGAAGT CCCAGATGTATTAGAAGTCAACACCGTCTTTCAGATTTTGAACACCTTGAACTGTCCAAG TTTGAAGGACAAACCCAAGGTGATCATTATCCAGGCTTGCCGTGGTGAGAAGCAAGGGGT CGTATGGATAAAAGATTCAGTAGGACCTTCTGGAAATTCCTCCTTACTGGCTGCAGAAGA TTTTGAGTATGATGCCATTAAGAAAGCCCACATAGAAAAAGATTTTATTGCTTTCTGTTC TTCAACACCAGATAATGTTTCTTGGCGACATCCCTTATTGGGCTCTCTTTTTATTATTAA ACTCATCAAAATTTTGCAAGAACATGCCTGGTCCTGTGACCTGGAGGAAATTTTTCGAAA GGTTCGATTTTCATTTGAGCTGGCAGATGGTAGGGCGCAGATGCCCACTGCCGAAAGAGT GACTTTGACTAGATCTTTCTACCTCTTTCCAGGATATTAAAATAAGAAGCCAGGAGTTCT GTCACTCTGTACCTGTTTTGGAATCACGTTAGCAGAAAACAGACATTTGTTTAAACATTC CAATAAATCTGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAACCAAGCCTAAGAAGGGAAAGCCATGGCTGACAAGATCCTGAAGGAGAAGAGGAGGCT GTTTGTCCGTTCAGTGGCCATGGGTACGATCAATGGCCTCTTGGATGAACTATTAGAGAC CAGAGTCCTGAACCAGGAGGAGGTGGAGATAGTAAGAGGTGAAAACGCTACAGTTATGGA TAAGGCCCGAGCTTTGATTGACTCTGTTATTCGGAAAGGGCCCCAGGCATGCCAAATTTG CATCAATCATATTTGTGGAGACGACCCCCACCTTGCAGGAGTCCTCGAACTCTCCACAGG TTCACAATCTGGAAAATGCCTTACTGTACAAGAATCCCAGGCGGTGGTTCCTCCTTTCCC AGCCCCTCAGACAGTACAAGACAACCCAGTTAAGCCTGCATCTTCAGAGCCAAGAGGGAG CCTCAAGCTTTGCCCCCCAGACATAGCCCAAAGGCTATGGAAAGAAAAGTCAGCAGAGAT TTACCCAATAATGGAAAAATCAATTCGCACACGCCTTGCCCTCATAATCTGCAACACAGA GTTTGAAAATCTTCCCAGGAGAGATGGTGCTGATGTTGATATTAGAGACATGAAGATACT ACTAGAAGATTTGGGTTACAGTGTGGATGTTAGAGAAAATCTCACCGCTTCGGACATGGC TATAGAGCTGAAGGCATTTGCTGCCCGCCCAGAGCACAAGTCCTCTGATAGTACTTTTCT GGTGCTCATGTCTCATGGAATCCAGGCTGGCATTTGTGGGAAGAAATACTCCGAAGAAGT CCCAGATGTATTAGAAGTCAACACCGTCTTTCAGATTTTGAACACCTTGAACTGTCCAAG TTTGAAGGACAAACCCAAGGTGATCATTATCCAGGCTTGCCGTGGTGAGAAGCAAGGGGT CGTATGGATAAAAGATTCAGTAGGACCTTCTGGAAATTCCTCCTTACTGGCTGCAGAAGA TTTTGAGTATGATGCCATTAAGAAAGCCCACATAGAAAAAGATTTTATTGCTTTCTGTTC TTCAACACCAGATAATGTTTCTTGGCGACATCCCTTATTGGGCTCTCTTTTTATTATTAA ACTCATCAAAATTTTGCAAGAACATGCCTGGTCCTGTGACCTGGAGGAAATTTTTCGAAA GGTTCGATTTTCATTTGAGCTGGCAGATGGTAGGGCGCAGATGCCCACTGCCGAAAGAGT GACTTTGACTAGATCTTTCTACCTCTTTCCAGGATATTAAAATAAGAAGCCAGGAGTTCT GTCACTCTGTACCTGTTTTGGAATCACGTTAGCAGAAAACAGACATTTGTTTAAACATTC CAATAAATCTGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 32-301, gnl|bosTau2|chr15 (100442-100173) | |
| 32-301, gnl|Hg17|chr11 (104410412-104410143) | |
| 32-301, gnl|Mm7|chr9 (5216520-5216789) | |
| 360-478, gnl|bosTau2|chr15 (94051-93933) | |
| 360-478, gnl|dasNov1|scaffold_198937 (3909-3751) | |
| 360-478, gnl|hg17|chr11 (104407095-104407253) | |
| 360-478, gnl|Hg17|chr11 (104407220-104407102) | |
| 360-478, gnl|mm7|chr9 (5219779-5219625) | |
| 360-478, gnl|Mm7|chr9 (5219655-5219770) | |
| 360-478, gnl|monDom2|scaffold_2 (138769092-138768958) | |
| 360-478, gnl|oryCun1|scaffold_160260 (4081-3928) | |
| 360-478, gnl|panTro1|chr9 (106402036-106402194) | |
| 360-478, gnl|rheMac2|chr14 (103605445-103605603) | |
| 360-478, gnl|rn3|chr8 (2031233-2031078) | |
| 652-887, gnl|bosTau2|chr15 (92666-92431) | |
| 652-887, gnl|Hg17|chr11 (104405837-104405602) | |
| 652-887, gnl|Mm7|chr9 (5220780-5221015) | |
| 1030-1143, gnl|bosTau2|chr15 (87431-87318) | |
| 1030-1143, gnl|dasNov1|scaffold_78400 (6333-5943) | |
| 1030-1143, gnl|echTel1|scaffold_284934 (965-665) | |
| 1030-1143, gnl|hg17|chr11 (104314678-104314965) | |
| 1030-1143, gnl|Hg17|chr11 (104402890-104402777) | |
| 1030-1143, gnl|mm7|chr9 (5223473-5223192) | |
| 1030-1143, gnl|Mm7|chr9 (5223356-5223469) | |
| 1030-1143, gnl|oryCun1|scaffold_160260 (7228-6940) | |
| 1030-1143, gnl|panTro1|chr9 (106318201-106318488) | |
| 1030-1143, gnl|rheMac2|chr14 (103511207-103511495) | |
| 1030-1143, gnl|rn3|chr8 (2035749-2035468) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 32-301, gnl|bosTau2|chr15 (100442-100173) | |
| 32-301, gnl|Hg17|chr11 (104410412-104410143) | |
| 32-301, gnl|Mm7|chr9 (5216520-5216789) | |
| 360-478, gnl|bosTau2|chr15 (94051-93933) | |
| 360-478, gnl|dasNov1|scaffold_198937 (3909-3751) | |
| 360-478, gnl|hg17|chr11 (104407095-104407253) | |
| 360-478, gnl|Hg17|chr11 (104407220-104407102) | |
| 360-478, gnl|mm7|chr9 (5219779-5219625) | |
| 360-478, gnl|Mm7|chr9 (5219655-5219770) | |
| 360-478, gnl|monDom2|scaffold_2 (138769092-138768958) | |
| 360-478, gnl|oryCun1|scaffold_160260 (4081-3928) | |
| 360-478, gnl|panTro1|chr9 (106402036-106402194) | |
| 360-478, gnl|rheMac2|chr14 (103605445-103605603) | |
| 360-478, gnl|rn3|chr8 (2031233-2031078) | |
| 652-887, gnl|bosTau2|chr15 (92666-92431) | |
| 652-887, gnl|Hg17|chr11 (104405837-104405602) | |
| 652-887, gnl|Mm7|chr9 (5220780-5221015) | |
| 1030-1143, gnl|bosTau2|chr15 (87431-87318) | |
| 1030-1143, gnl|dasNov1|scaffold_78400 (6333-5943) | |
| 1030-1143, gnl|echTel1|scaffold_284934 (965-665) | |
| 1030-1143, gnl|hg17|chr11 (104314678-104314965) | |
| 1030-1143, gnl|Hg17|chr11 (104402890-104402777) | |
| 1030-1143, gnl|mm7|chr9 (5223473-5223192) | |
| 1030-1143, gnl|Mm7|chr9 (5223356-5223469) | |
| 1030-1143, gnl|oryCun1|scaffold_160260 (7228-6940) | |
| 1030-1143, gnl|panTro1|chr9 (106318201-106318488) | |
| 1030-1143, gnl|rheMac2|chr14 (103511207-103511495) | |
| 1030-1143, gnl|rn3|chr8 (2035749-2035468) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| jej (0.395687) | |
| nco (0.323468) | |
| cbl (0.229595) | |
| eje (0.197668) | |
| nep (0.183925) | |
| sin (0.174948) | |
| bla (0.124347) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (0.395687) | |
| nco (0.323468) | |
| cbl (0.229595) | |
| eje (0.197668) | |
| nep (0.183925) | |
| sin (0.174948) | |
| bla (0.124347) |