Ss1.1-Tra1-TCH01E030051.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTAGTCAAATCCCGGCCTCTGGCCCCTCACCCCTAACCCGAGACCGGGCTGCCAACCGA TTCACCTCGCGACCTGCGGACCGCAACCTCGACCTGAGAAAGAAAGAGCGACATGGCGGC GGCCAAGCCCGAGAACCTCTCCCTGGTGGTGCACGGACCTGGAGACCTGCGCCTGGAGAA CTATCCTATCCCTGAACCAGGCCCAAATGAGGTGTTGCTGAAGATGCATTCAGTTGGAAT CTGCGGCTCAGATGTCCACTACTGGCAGCATGGTCGAATTGGAAATTTTGTTGTGAAAAA GCCAATGGTGCTGGGGCATGAAGCTTCAGGAACAGTTGTAAAAGTAGGATCATTGGTGAC GCACCTAAAACCAGGTGACCGTGTTGCCATCGAGCCTGGTGCTCCCCGAGAATCTGATGA ATTCTGCAAGATTGGCCGATACAATCTGTCACCAACCATCTTCTTCTGTGCCACACCCCC TGATGATGGGAACCTCTGCCGGTTCTACAAACACAATTCTAACTTCTGCTACAAGCTTCC TGACAATGTCACCTTTGAGGAAGGGGCCCTGATTGAGCCACTGTCTGTGGGAATCCATGC CTGCCGGCGAGCTGGAGTCACTTTGGGAAACAAGGTCTTTGTGTGTGGAGCTGGGCCAAT TGGATTGGTCAGTTTGCTTGTGGCCAAGGCAATGGGTGCAGCTCAAGTTGTGGTGTCTGA TCTGTCTGCGGCTCGGTTGTCTAAAGCCAAGGAAGTTGGGGCAGATTTCATCCTCCAGAT CTCCAACGAGAGCCCTCAGGAAATCGCCAATCAAGTGGAAGGCCTGCTGGGGTGCAAGCC AGAAGTCACCATCGAGTGCACAGGGGTGGAGGCCTCCATCCAGGCTGGCATCTATGCCAC TCATTCTGGTGGGACCCTGGTACTTGTGGGGCTGGGCTCTGAGATGACCAGTGTGCCCCT AGTGCACGCAGCCACCAGGGAAGTGGATATCAAGGGCGTGTTTCGATACTGCAATACGTG GCCGATGGCAATTTCAATGCTTGCATCCAAGTCCGTGAACGTTAAGCCCTTGGTCACCCA TCGGTTTCCCCTGGAGAAAGCTCTGGAGGCCTTTGAAACATCCAAAAAGGGATTGGGGTT GAAAGTCATGATCAAGTGTGATCCCAATGACCAGAATCCATAATGTGAATTGTGTTCTGT CCTTGTCCCCACTTTCAGCATCTTGGGGCTGAATGGTTGGCTGAGCAGTGGTGGATTTTG ACACAGAAGTTTCTTTTGAGTAGAAAGAGCAATTAAAATAATTATCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTAGTCAAATCCCGGCCTCTGGCCCCTCACCCCTAACCCGAGACCGGGCTGCCAACCGA TTCACCTCGCGACCTGCGGACCGCAACCTCGACCTGAGAAAGAAAGAGCGACATGGCGGC GGCCAAGCCCGAGAACCTCTCCCTGGTGGTGCACGGACCTGGAGACCTGCGCCTGGAGAA CTATCCTATCCCTGAACCAGGCCCAAATGAGGTGTTGCTGAAGATGCATTCAGTTGGAAT CTGCGGCTCAGATGTCCACTACTGGCAGCATGGTCGAATTGGAAATTTTGTTGTGAAAAA GCCAATGGTGCTGGGGCATGAAGCTTCAGGAACAGTTGTAAAAGTAGGATCATTGGTGAC GCACCTAAAACCAGGTGACCGTGTTGCCATCGAGCCTGGTGCTCCCCGAGAATCTGATGA ATTCTGCAAGATTGGCCGATACAATCTGTCACCAACCATCTTCTTCTGTGCCACACCCCC TGATGATGGGAACCTCTGCCGGTTCTACAAACACAATTCTAACTTCTGCTACAAGCTTCC TGACAATGTCACCTTTGAGGAAGGGGCCCTGATTGAGCCACTGTCTGTGGGAATCCATGC CTGCCGGCGAGCTGGAGTCACTTTGGGAAACAAGGTCTTTGTGTGTGGAGCTGGGCCAAT TGGATTGGTCAGTTTGCTTGTGGCCAAGGCAATGGGTGCAGCTCAAGTTGTGGTGTCTGA TCTGTCTGCGGCTCGGTTGTCTAAAGCCAAGGAAGTTGGGGCAGATTTCATCCTCCAGAT CTCCAACGAGAGCCCTCAGGAAATCGCCAATCAAGTGGAAGGCCTGCTGGGGTGCAAGCC AGAAGTCACCATCGAGTGCACAGGGGTGGAGGCCTCCATCCAGGCTGGCATCTATGCCAC TCATTCTGGTGGGACCCTGGTACTTGTGGGGCTGGGCTCTGAGATGACCAGTGTGCCCCT AGTGCACGCAGCCACCAGGGAAGTGGATATCAAGGGCGTGTTTCGATACTGCAATACGTG GCCGATGGCAATTTCAATGCTTGCATCCAAGTCCGTGAACGTTAAGCCCTTGGTCACCCA TCGGTTTCCCCTGGAGAAAGCTCTGGAGGCCTTTGAAACATCCAAAAAGGGATTGGGGTT GAAAGTCATGATCAAGTGTGATCCCAATGACCAGAATCCATAATGTGAATTGTGTTCTGT CCTTGTCCCCACTTTCAGCATCTTGGGGCTGAATGGTTGGCTGAGCAGTGGTGGATTTTG ACACAGAAGTTTCTTTTGAGTAGAAAGAGCAATTAAAATAATTATCAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1058-1177, + strand, RNAz p=0.595195 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1058-1177, + strand, RNAz p=0.595195 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 4-182, gnl|bosTau2|chr10 (45144927-45145110) | |
| 4-182, gnl|canFam2|chr30 (14459564-14459008) | |
| 4-182, gnl|echTel1|scaffold_81020 (1553-1025) | |
| 4-182, gnl|hg17|chr15 (42940860-42941391) | |
| 4-182, gnl|Hg17|chr15 (42941453-42941267) | |
| 4-182, gnl|loxAfr1|scaffold_215142 (607-88) | |
| 4-182, gnl|mm7|chr2 (121976264-121975699) | |
| 4-182, gnl|Mm7|chr2 (121975641-121975819) | |
| 4-182, gnl|oryCun1|scaffold_213714 (32767-32242) | |
| 4-182, gnl|panTro1|chr16 (42880436-42880967) | |
| 4-182, gnl|rheMac2|chr7 (23382840-23382305) | |
| 4-182, gnl|rn3|chr3 (108922992-108922439) | |
| 370-535, gnl|bosTau2|chr10 (45111257-45111092) | |
| 370-535, gnl|canFam2|chr30 (14479636-14479454) | |
| 370-535, gnl|danRer3|chrUn (80233366-80233543) | |
| 370-535, gnl|dasNov1|scaffold_88914 (8504-8322) | |
| 370-535, gnl|echTel1|scaffold_128482 (930-749) | |
| 370-535, gnl|fr1|chrUn (129432075-129431886) | |
| 370-535, gnl|galGal2|chr10 (1586765-1586587) | |
| 370-535, gnl|hg17|chr15 (42918852-42919034) | |
| 370-535, gnl|Hg17|chr15 (43140550-43140717) | |
| 370-535, gnl|mm7|chr2 (121994210-121994028) | |
| 370-535, gnl|Mm7|chr2 (121994035-121994200) | |
| 370-535, gnl|monDom2|scaffold_53 (9043727-9043906) | |
| 370-535, gnl|oryCun1|scaffold_213714 (51285-51103) | |
| 370-535, gnl|panTro1|chr16 (42848617-42848799) | |
| 370-535, gnl|rheMac2|chr7 (23413730-23413548) | |
| 370-535, gnl|rn3|chr3 (108942305-108942123) | |
| 370-535, gnl|tetNig1|chr5 (7140099-7140267) | |
| 370-535, gnl|xenTro1|scaffold_295 (1284657-1284476) | |
| 1019-1303, gnl|bosTau2|chr10 (45097684-45097413) | |
| 1019-1303, gnl|Hg17|chr15 (43152856-43153139) | |
| 1019-1303, gnl|Mm7|chr2 (122004895-122005169) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-182, gnl|bosTau2|chr10 (45144927-45145110) | |
| 4-182, gnl|canFam2|chr30 (14459564-14459008) | |
| 4-182, gnl|echTel1|scaffold_81020 (1553-1025) | |
| 4-182, gnl|hg17|chr15 (42940860-42941391) | |
| 4-182, gnl|Hg17|chr15 (42941453-42941267) | |
| 4-182, gnl|loxAfr1|scaffold_215142 (607-88) | |
| 4-182, gnl|mm7|chr2 (121976264-121975699) | |
| 4-182, gnl|Mm7|chr2 (121975641-121975819) | |
| 4-182, gnl|oryCun1|scaffold_213714 (32767-32242) | |
| 4-182, gnl|panTro1|chr16 (42880436-42880967) | |
| 4-182, gnl|rheMac2|chr7 (23382840-23382305) | |
| 4-182, gnl|rn3|chr3 (108922992-108922439) | |
| 370-535, gnl|bosTau2|chr10 (45111257-45111092) | |
| 370-535, gnl|canFam2|chr30 (14479636-14479454) | |
| 370-535, gnl|danRer3|chrUn (80233366-80233543) | |
| 370-535, gnl|dasNov1|scaffold_88914 (8504-8322) | |
| 370-535, gnl|echTel1|scaffold_128482 (930-749) | |
| 370-535, gnl|fr1|chrUn (129432075-129431886) | |
| 370-535, gnl|galGal2|chr10 (1586765-1586587) | |
| 370-535, gnl|hg17|chr15 (42918852-42919034) | |
| 370-535, gnl|Hg17|chr15 (43140550-43140717) | |
| 370-535, gnl|mm7|chr2 (121994210-121994028) | |
| 370-535, gnl|Mm7|chr2 (121994035-121994200) | |
| 370-535, gnl|monDom2|scaffold_53 (9043727-9043906) | |
| 370-535, gnl|oryCun1|scaffold_213714 (51285-51103) | |
| 370-535, gnl|panTro1|chr16 (42848617-42848799) | |
| 370-535, gnl|rheMac2|chr7 (23413730-23413548) | |
| 370-535, gnl|rn3|chr3 (108942305-108942123) | |
| 370-535, gnl|tetNig1|chr5 (7140099-7140267) | |
| 370-535, gnl|xenTro1|scaffold_295 (1284657-1284476) | |
| 1019-1303, gnl|bosTau2|chr10 (45097684-45097413) | |
| 1019-1303, gnl|Hg17|chr15 (43152856-43153139) | |
| 1019-1303, gnl|Mm7|chr2 (122004895-122005169) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| cli (1.22249) | |
| cov (0.925069) | |
| cty (0.62448) | |
| ill (0.351185) | |
| cki (0.330469) | |
| lun (0.300978) | |
| pan (0.23596) | |
| mas (0.210305) | |
| fcc (0.197785) | |
| col (0.195008) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| nje (0.16592) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| pla (0.133672) | |
| kid (0.129735) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (1.22249) | |
| cov (0.925069) | |
| cty (0.62448) | |
| ill (0.351185) | |
| cki (0.330469) | |
| lun (0.300978) | |
| pan (0.23596) | |
| mas (0.210305) | |
| fcc (0.197785) | |
| col (0.195008) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| nje (0.16592) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| pla (0.133672) | |
| kid (0.129735) | |
| jej (0.0989218) | |
| eje (0.0988338) |