Non-Coding RNA Search

Ss1.1-Tra1-TCH01E030082.5

Sequence:


               
               CTTAGAAGTTTCATTTTGGAGCTTGTTTAAGGAATGGATAAAGCCACATTTGAACTATAG
GGTAAGCACTGAACAAACTGTTTTGGAGTAAACAGCTACTCTTAGAAAAGAAAGAGAAGC
AGATTCTCTTAAAGACTTGGAGTTCATGAACTTATATTTGGGGTTGCCTCAAGAACTCAG
GGAACAATACTTTAAGCCGTTTTTCTCAAATATCATAGGGCCTCTTTAAGAATTTGAAAC
ATATAAATTATGTGACCTTATTTATTTGTCTTACATTTAGAGCCATAGTGGGATTTTTAT
TTCTACCTTTTCAGTGAATTTTACCTTCTGAAAAAAGGCCTTAATTTTAGAGTTAAAGAC
TTCTAACATAAGGAAGACTTATTTGCTAGTTTGTTTGATATAGGTCAAAATGTCTATGCT
TCCTCTTCCTCTGCACGGCAAATCCTGATCTTAAGAATTTCTTATTGTGATAAGAATTGG
CATGCCATCTGAGGTAAAGGAGTGCCAAACAGGATTTTCCATTCAGTCTCAAGACTAGAT
AGAGCATTATAGAATAGTAATAAACATTTTGGATAACTTCCCTCCCCCCAAGTAAAATCT
CTGCTGCTAGCATATTTCAGCCTGTGGGTAGAGTACTTACTATGTTTGGGACACAAAGCT
AATCACAGCCACCTGTTTGCTTTTGTGGAAGAGTAATTAGATCAGAAAATACACTTTGAT
GAATTCAAGAAAAGCCAAGTCCATTGAGTTTTAAGAGGTATGACAACAAAATCAAACACT
GCTTTATGGGCAGGAACAAAAGATGAAGCAAATTCCTTAAGAGAACATGTCAGGAGTTCC
TGCTTTGGTACAGTGGGTTAAGAATCCGACTTGCAGGGAGATCTCAATGTGGCTCAGCGG
GTTGAGGACCTGATGTAATCTCTGTGAGGATGTGAGTTCCAATCCCTGGCCTTGCTCAGT
GGGTTAAGGATCCTACATTGCTGCAAGCTGCAGTGCAGGTCATAGATGCTGCTTGATCTG
GTATTGCTATAGCTGTGGCCTAGGCCCACAGCTGCAGCTCCAATTCAACCCCTAGCTCGG
GAAATTCCATATCCCACAGATGACCATTAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTAGAAGTTTCATTTTGGAGCTTGTTTAAGGAATGGATAAAGCCACATTTGAACTATAG
GGTAAGCACTGAACAAACTGTTTTGGAGTAAACAGCTACTCTTAGAAAAGAAAGAGAAGC
AGATTCTCTTAAAGACTTGGAGTTCATGAACTTATATTTGGGGTTGCCTCAAGAACTCAG
GGAACAATACTTTAAGCCGTTTTTCTCAAATATCATAGGGCCTCTTTAAGAATTTGAAAC
ATATAAATTATGTGACCTTATTTATTTGTCTTACATTTAGAGCCATAGTGGGATTTTTAT
TTCTACCTTTTCAGTGAATTTTACCTTCTGAAAAAAGGCCTTAATTTTAGAGTTAAAGAC
TTCTAACATAAGGAAGACTTATTTGCTAGTTTGTTTGATATAGGTCAAAATGTCTATGCT
TCCTCTTCCTCTGCACGGCAAATCCTGATCTTAAGAATTTCTTATTGTGATAAGAATTGG
CATGCCATCTGAGGTAAAGGAGTGCCAAACAGGATTTTCCATTCAGTCTCAAGACTAGAT
AGAGCATTATAGAATAGTAATAAACATTTTGGATAACTTCCCTCCCCCCAAGTAAAATCT
CTGCTGCTAGCATATTTCAGCCTGTGGGTAGAGTACTTACTATGTTTGGGACACAAAGCT
AATCACAGCCACCTGTTTGCTTTTGTGGAAGAGTAATTAGATCAGAAAATACACTTTGAT
GAATTCAAGAAAAGCCAAGTCCATTGAGTTTTAAGAGGTATGACAACAAAATCAAACACT
GCTTTATGGGCAGGAACAAAAGATGAAGCAAATTCCTTAAGAGAACATGTCAGGAGTTCC
TGCTTTGGTACAGTGGGTTAAGAATCCGACTTGCAGGGAGATCTCAATGTGGCTCAGCGG
GTTGAGGACCTGATGTAATCTCTGTGAGGATGTGAGTTCCAATCCCTGGCCTTGCTCAGT
GGGTTAAGGATCCTACATTGCTGCAAGCTGCAGTGCAGGTCATAGATGCTGCTTGATCTG
GTATTGCTATAGCTGTGGCCTAGGCCCACAGCTGCAGCTCCAATTCAACCCCTAGCTCGG
GAAATTCCATATCCCACAGATGACCATTAAAAAAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-822, gnl|bosTau2|chr10 (29121591-29120749)
               

               
               1-822, gnl|Hg17|chr14 (50259236-50258396)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-822, gnl|bosTau2|chr10 (29121591-29120749)
               

               
               1-822, gnl|Hg17|chr14 (50259236-50258396)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cbl (0.45919)
               

               
               amn (0.417711)
               

               
               ski (0.146735)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.45919)
               

               
               amn (0.417711)
               

               
               ski (0.146735)

	1-822, gnl\|bosTau2\|chr10 (29121591-29120749)
	1-822, gnl\|Hg17\|chr14 (50259236-50258396)