Non-Coding RNA Search

Ss1.1-Tra1-TCH01E030100.5

Sequence:


               
               AAGGCGGTCTGCTGGGCCAACCTTGGTATGCAGGGAACTGTGACCGCCATGCTGTTGAGA
GTGCCCTGCTCCGACTCCAAAAGGATGGGGCCTACACCATACGCCCCAGCTCAGGCCCTC
ATGGCTCCCAGCCCTTCACTCTGGCAGTGCTTCTCCATGGCCGGGTCTTCAACATTCCCA
TCCGGCAGCTGGACGGCGGGCGCCACTATGCCCTGGGCCGGGAGGGCAGGAACCACGAGG
AGCTCTTCTCCTCCGTGGTCGCCATGGTCCAGCACTACGTGCAGCATCCCCTGCCGCTCG
TGGACCGACACAGCGGCAGCCGGCAGCTCACCTGCCTGCTCTTCCCCACCAAGCCCTGAC
GTCACTGCGCATGTGCAGGCCCACTGCTGGCCCCCAGTTTGTTCCGCCGGCTGTCCTCTC
CCAGGTCACCATCCCTCCAGCGCCCTCATCCCGTGCCCCAGTCCCTGCAGGCTCCCCTGA
AAGGCGTTGGGAAAGGTGCCCCAGAGACAGAAAGGGTCTGCGAGACTCCACGCCATTCTC
ACCCAGAGCCTGGCCCTGCCACTCGCTCCTGCATCTCCTGGGAAGCAGGGGACAGGCAGG
GCCCCATTTTCGGCCCCAGGCGTGGCCCCCCAAGCTGCTCTGCATGAAGACCTGTTTGGG
GAAGCCGATCCTCAGGGGGACTGCATGGGAACTGCTTGGCTGCGAAGCGGATCCTCTCAC
ATTCCATAAGGGGTGTAACACAGGGCTGGCATCTACCCTCGAGGCACTTGGTCACTCTGC
CCGTAGTTTGCTTTCAATAAATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGCGGTCTGCTGGGCCAACCTTGGTATGCAGGGAACTGTGACCGCCATGCTGTTGAGA
GTGCCCTGCTCCGACTCCAAAAGGATGGGGCCTACACCATACGCCCCAGCTCAGGCCCTC
ATGGCTCCCAGCCCTTCACTCTGGCAGTGCTTCTCCATGGCCGGGTCTTCAACATTCCCA
TCCGGCAGCTGGACGGCGGGCGCCACTATGCCCTGGGCCGGGAGGGCAGGAACCACGAGG
AGCTCTTCTCCTCCGTGGTCGCCATGGTCCAGCACTACGTGCAGCATCCCCTGCCGCTCG
TGGACCGACACAGCGGCAGCCGGCAGCTCACCTGCCTGCTCTTCCCCACCAAGCCCTGAC
GTCACTGCGCATGTGCAGGCCCACTGCTGGCCCCCAGTTTGTTCCGCCGGCTGTCCTCTC
CCAGGTCACCATCCCTCCAGCGCCCTCATCCCGTGCCCCAGTCCCTGCAGGCTCCCCTGA
AAGGCGTTGGGAAAGGTGCCCCAGAGACAGAAAGGGTCTGCGAGACTCCACGCCATTCTC
ACCCAGAGCCTGGCCCTGCCACTCGCTCCTGCATCTCCTGGGAAGCAGGGGACAGGCAGG
GCCCCATTTTCGGCCCCAGGCGTGGCCCCCCAAGCTGCTCTGCATGAAGACCTGTTTGGG
GAAGCCGATCCTCAGGGGGACTGCATGGGAACTGCTTGGCTGCGAAGCGGATCCTCTCAC
ATTCCATAAGGGGTGTAACACAGGGCTGGCATCTACCCTCGAGGCACTTGGTCACTCTGC
CCGTAGTTTGCTTTCAATAAATAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|33187645|gb|AAP97677.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|33187645|gb|AAP97677.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               543-655, - strand, RNAz p=0.804724

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               543-655, - strand, RNAz p=0.804724

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-109, gnl|bosTau2|chr11 (34683269-34683161)
               

               
               1-109, gnl|canFam2|chr17 (42667945-42667854)
               

               
               1-109, gnl|dasNov1|scaffold_214825 (483-574)
               

               
               1-109, gnl|echTel1|scaffold_300533 (8366-8457)
               

               
               1-109, gnl|fr1|chrUn (194389637-194389546)
               

               
               1-109, gnl|hg17|chr2 (85574192-85574283)
               

               
               1-109, gnl|Hg17|chr2 (85574195-85574297)
               

               
               1-109, gnl|loxAfr1|scaffold_154102 (293-384)
               

               
               1-109, gnl|mm7|chr6 (72533560-72533469)
               

               
               1-109, gnl|Mm7|chr6 (72533555-72533453)
               

               
               1-109, gnl|monDom2|scaffold_68 (9334860-9334951)
               

               
               1-109, gnl|oryCun1|scaffold_200853 (53581-53672)
               

               
               1-109, gnl|panTro1|chr12 (88439811-88439902)
               

               
               1-109, gnl|rheMac2|chr13 (86003211-86003302)
               

               
               1-109, gnl|rn3|chr4 (106062982-106062891)
               

               
               1-109, gnl|tetNig1|chrUn_random (138162341-138162272)
               


               
               241-804, gnl|bosTau2|chr11 (34682119-34681555)
               

               
               241-804, gnl|Hg17|chr2 (85575245-85575798)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-109, gnl|bosTau2|chr11 (34683269-34683161)
               

               
               1-109, gnl|canFam2|chr17 (42667945-42667854)
               

               
               1-109, gnl|dasNov1|scaffold_214825 (483-574)
               

               
               1-109, gnl|echTel1|scaffold_300533 (8366-8457)
               

               
               1-109, gnl|fr1|chrUn (194389637-194389546)
               

               
               1-109, gnl|hg17|chr2 (85574192-85574283)
               

               
               1-109, gnl|Hg17|chr2 (85574195-85574297)
               

               
               1-109, gnl|loxAfr1|scaffold_154102 (293-384)
               

               
               1-109, gnl|mm7|chr6 (72533560-72533469)
               

               
               1-109, gnl|Mm7|chr6 (72533555-72533453)
               

               
               1-109, gnl|monDom2|scaffold_68 (9334860-9334951)
               

               
               1-109, gnl|oryCun1|scaffold_200853 (53581-53672)
               

               
               1-109, gnl|panTro1|chr12 (88439811-88439902)
               

               
               1-109, gnl|rheMac2|chr13 (86003211-86003302)
               

               
               1-109, gnl|rn3|chr4 (106062982-106062891)
               

               
               1-109, gnl|tetNig1|chrUn_random (138162341-138162272)
               


               
               241-804, gnl|bosTau2|chr11 (34682119-34681555)
               

               
               241-804, gnl|Hg17|chr2 (85575245-85575798)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nep (0.183925)
               

               
               hyp (0.142837)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               hyp (0.142837)

	1-109, gnl\|bosTau2\|chr11 (34683269-34683161)
	1-109, gnl\|canFam2\|chr17 (42667945-42667854)
	1-109, gnl\|dasNov1\|scaffold_214825 (483-574)
	1-109, gnl\|echTel1\|scaffold_300533 (8366-8457)
	1-109, gnl\|fr1\|chrUn (194389637-194389546)
	1-109, gnl\|hg17\|chr2 (85574192-85574283)
	1-109, gnl\|Hg17\|chr2 (85574195-85574297)
	1-109, gnl\|loxAfr1\|scaffold_154102 (293-384)
	1-109, gnl\|mm7\|chr6 (72533560-72533469)
	1-109, gnl\|Mm7\|chr6 (72533555-72533453)
	1-109, gnl\|monDom2\|scaffold_68 (9334860-9334951)
	1-109, gnl\|oryCun1\|scaffold_200853 (53581-53672)
	1-109, gnl\|panTro1\|chr12 (88439811-88439902)
	1-109, gnl\|rheMac2\|chr13 (86003211-86003302)
	1-109, gnl\|rn3\|chr4 (106062982-106062891)
	1-109, gnl\|tetNig1\|chrUn_random (138162341-138162272)

	241-804, gnl\|bosTau2\|chr11 (34682119-34681555)
	241-804, gnl\|Hg17\|chr2 (85575245-85575798)