Ss1.1-Tra1-TCH01E040012.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGAGATTCCCCCTCGCCAGCAGCGCCGCGGGCGCGGGCCGCGCGCACCATGCCAGCCGG ACGGCCTCTGGGCACGCGGGCGCGGCGCCGGCGTGGCAGGTGCTGTCACTCCTCCCACCC CAGTAAAGAGCACCTGAGGCTGGATGGTCATGGGGGAGCCTGGTAGAGAGGAGTACAGAA TCCAGTCTTTTGATGCAGAGAGCCAGCAGCTGCTGAAGACAGCACTCAAAGATCCAGGTG CCGTGGACTTGGAGAAGGTGGCCAATGTGATTGTGGACCATTCTCTGCAGGACTGTGTGT TCAGCAAGGAAGCAGGACGCATGTGCTACGCCATCATTCAGGCGGAGAGCAAGCAAGCTG GCCAGAGTGTCTTCCGCCGCGGACTCCTCAACCGGCTGCAGCAGGAGTACCAGGCTCGGG AGCAGCTTCGAGCACGATCCCTGCAAGGCTGGGTCTGCTACGTCACCTTTATCTGCAACA TCTTTGACTACCTGAGGGTGAACAACATGCCCATGATGGCCCTGGTGAACCCGGTCTACG ACTGCCTCTTCCGGCTGGCCCAGCCGGACAGTCTGAGCAAGGAGGAGGAGGTGGACTGCC TGGTGCTGCAGCTGCATCGCGTCGGGGAGCAGCTGGAGAAGATGAACAGGCAGCGCATGG ATGAGCTCTTTGTCCTGATCCGGGATGGCTTCCTGCTCCCAACGGGCCTCAGCTCCCTGG CCCAGCTGCTGCTGCTGGAGACCATCGAGTTCCGGGCGGCCGGCTGGAAGACGACCCCGG CTGCCCACAAGTACTACTACAGCGAGCTCTCGGACTAGGGCCCCAGACCAGGCTTCCTCC CCAGCAGCGCTGGCCTTCCTCCTACCCACTCCCCAACCTGGCAGTGGGGTCCTTGTCTCA CCTTCCAGACTTTCAAAAGCACTCAAGACGTTTCCCACTCACACGGTGGTGCGGCCCTGA GCACCTTCCCTCCCTGACCCCAGGACGGGAAGACCCTACACACCTGCCCCAGTCCCATCA GCCTTTCTCTCATCCCCTTCAACCTGGACCAGGCAGAGAAGGGCAACTCCTGACAAGCAC TGCACTAACCATCACTGCAACAGCTAGCTTGGTGCCTCAGTTCCCCATCTGGAAAATGGG GAGCCATCGCCATGGGTGGGGTGCTTTGGGGTATCAAAGGGAGAAGCAGAGCACAAGTCA CACTGCTTTTTATACATTTTGTACAAGGATCACTTTGGAACCAAGCACCCTTCCTGCCGC TGGTTTTAATGAAGGGCACTACCACATCGCAAGCCACACCACTTCAGGATGAGAATTTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGAGATTCCCCCTCGCCAGCAGCGCCGCGGGCGCGGGCCGCGCGCACCATGCCAGCCGG ACGGCCTCTGGGCACGCGGGCGCGGCGCCGGCGTGGCAGGTGCTGTCACTCCTCCCACCC CAGTAAAGAGCACCTGAGGCTGGATGGTCATGGGGGAGCCTGGTAGAGAGGAGTACAGAA TCCAGTCTTTTGATGCAGAGAGCCAGCAGCTGCTGAAGACAGCACTCAAAGATCCAGGTG CCGTGGACTTGGAGAAGGTGGCCAATGTGATTGTGGACCATTCTCTGCAGGACTGTGTGT TCAGCAAGGAAGCAGGACGCATGTGCTACGCCATCATTCAGGCGGAGAGCAAGCAAGCTG GCCAGAGTGTCTTCCGCCGCGGACTCCTCAACCGGCTGCAGCAGGAGTACCAGGCTCGGG AGCAGCTTCGAGCACGATCCCTGCAAGGCTGGGTCTGCTACGTCACCTTTATCTGCAACA TCTTTGACTACCTGAGGGTGAACAACATGCCCATGATGGCCCTGGTGAACCCGGTCTACG ACTGCCTCTTCCGGCTGGCCCAGCCGGACAGTCTGAGCAAGGAGGAGGAGGTGGACTGCC TGGTGCTGCAGCTGCATCGCGTCGGGGAGCAGCTGGAGAAGATGAACAGGCAGCGCATGG ATGAGCTCTTTGTCCTGATCCGGGATGGCTTCCTGCTCCCAACGGGCCTCAGCTCCCTGG CCCAGCTGCTGCTGCTGGAGACCATCGAGTTCCGGGCGGCCGGCTGGAAGACGACCCCGG CTGCCCACAAGTACTACTACAGCGAGCTCTCGGACTAGGGCCCCAGACCAGGCTTCCTCC CCAGCAGCGCTGGCCTTCCTCCTACCCACTCCCCAACCTGGCAGTGGGGTCCTTGTCTCA CCTTCCAGACTTTCAAAAGCACTCAAGACGTTTCCCACTCACACGGTGGTGCGGCCCTGA GCACCTTCCCTCCCTGACCCCAGGACGGGAAGACCCTACACACCTGCCCCAGTCCCATCA GCCTTTCTCTCATCCCCTTCAACCTGGACCAGGCAGAGAAGGGCAACTCCTGACAAGCAC TGCACTAACCATCACTGCAACAGCTAGCTTGGTGCCTCAGTTCCCCATCTGGAAAATGGG GAGCCATCGCCATGGGTGGGGTGCTTTGGGGTATCAAAGGGAGAAGCAGAGCACAAGTCA CACTGCTTTTTATACATTTTGTACAAGGATCACTTTGGAACCAAGCACCCTTCCTGCCGC TGGTTTTAATGAAGGGCACTACCACATCGCAAGCCACACCACTTCAGGATGAGAATTTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 708-827, - strand, RNAz p=0.520437 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 708-827, - strand, RNAz p=0.520437 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_015971, - |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 97-231, gnl|bosTau2|chr19 (50791709-50791843) | |
| 97-231, gnl|canFam2|chr9 (8226472-8226349) | |
| 97-231, gnl|danRer3|chrNA (119905266-119905167) | |
| 97-231, gnl|dasNov1|scaffold_147234 (445-330) | |
| 97-231, gnl|echTel1|scaffold_276178 (5868-5745) | |
| 97-231, gnl|fr1|chrUn (120986744-120986855) | |
| 97-231, gnl|hg17|chr17 (70777770-70777893) | |
| 97-231, gnl|Hg17|chr17 (70777924-70777790) | |
| 97-231, gnl|mm7|chr11 (115720928-115721051) | |
| 97-231, gnl|Mm7|chr11 (115721082-115720948) | |
| 97-231, gnl|monDom2|scaffold_18 (32783574-32783691) | |
| 97-231, gnl|panTro1|chr19 (74127281-74127404) | |
| 97-231, gnl|rheMac2|chr16 (70561892-70562016) | |
| 97-231, gnl|rn3|chr10 (105705642-105705765) | |
| 97-231, gnl|tetNig1|chr3 (8726904-8726986) | |
| 97-231, gnl|xenTro1|scaffold_632 (121754-121664) | |
| 339-501, gnl|bosTau2|chr19 (50793283-50793445) | |
| 339-501, gnl|canFam2|chr9 (8227745-8227575) | |
| 339-501, gnl|danRer3|chrNA (17241863-17241693) | |
| 339-501, gnl|echTel1|scaffold_276178 (8064-7892) | |
| 339-501, gnl|fr1|chrUn (120986140-120986310) | |
| 339-501, gnl|hg17|chr17 (70775419-70775589) | |
| 339-501, gnl|Hg17|chr17 (70775580-70775418) | |
| 339-501, gnl|mm7|chr11 (115718322-115718492) | |
| 339-501, gnl|Mm7|chr11 (115718483-115718321) | |
| 339-501, gnl|monDom2|scaffold_18 (32781391-32781561) | |
| 339-501, gnl|oryCun1|scaffold_183169 (751-583) | |
| 339-501, gnl|panTro1|chr19 (74124926-74125096) | |
| 339-501, gnl|rheMac2|chr16 (70558485-70558655) | |
| 339-501, gnl|rn3|chr10 (105703045-105703216) | |
| 339-501, gnl|tetNig1|chr3 (8726318-8726488) | |
| 339-501, gnl|xenTro1|scaffold_632 (122965-122797) | |
| 589-1320, gnl|bosTau2|chr19 (50794146-50794884) | |
| 589-1320, gnl|Hg17|chr17 (70774645-70773929) | |
| 589-1320, gnl|Mm7|chr11 (115717660-115716987) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 97-231, gnl|bosTau2|chr19 (50791709-50791843) | |
| 97-231, gnl|canFam2|chr9 (8226472-8226349) | |
| 97-231, gnl|danRer3|chrNA (119905266-119905167) | |
| 97-231, gnl|dasNov1|scaffold_147234 (445-330) | |
| 97-231, gnl|echTel1|scaffold_276178 (5868-5745) | |
| 97-231, gnl|fr1|chrUn (120986744-120986855) | |
| 97-231, gnl|hg17|chr17 (70777770-70777893) | |
| 97-231, gnl|Hg17|chr17 (70777924-70777790) | |
| 97-231, gnl|mm7|chr11 (115720928-115721051) | |
| 97-231, gnl|Mm7|chr11 (115721082-115720948) | |
| 97-231, gnl|monDom2|scaffold_18 (32783574-32783691) | |
| 97-231, gnl|panTro1|chr19 (74127281-74127404) | |
| 97-231, gnl|rheMac2|chr16 (70561892-70562016) | |
| 97-231, gnl|rn3|chr10 (105705642-105705765) | |
| 97-231, gnl|tetNig1|chr3 (8726904-8726986) | |
| 97-231, gnl|xenTro1|scaffold_632 (121754-121664) | |
| 339-501, gnl|bosTau2|chr19 (50793283-50793445) | |
| 339-501, gnl|canFam2|chr9 (8227745-8227575) | |
| 339-501, gnl|danRer3|chrNA (17241863-17241693) | |
| 339-501, gnl|echTel1|scaffold_276178 (8064-7892) | |
| 339-501, gnl|fr1|chrUn (120986140-120986310) | |
| 339-501, gnl|hg17|chr17 (70775419-70775589) | |
| 339-501, gnl|Hg17|chr17 (70775580-70775418) | |
| 339-501, gnl|mm7|chr11 (115718322-115718492) | |
| 339-501, gnl|Mm7|chr11 (115718483-115718321) | |
| 339-501, gnl|monDom2|scaffold_18 (32781391-32781561) | |
| 339-501, gnl|oryCun1|scaffold_183169 (751-583) | |
| 339-501, gnl|panTro1|chr19 (74124926-74125096) | |
| 339-501, gnl|rheMac2|chr16 (70558485-70558655) | |
| 339-501, gnl|rn3|chr10 (105703045-105703216) | |
| 339-501, gnl|tetNig1|chr3 (8726318-8726488) | |
| 339-501, gnl|xenTro1|scaffold_632 (122965-122797) | |
| 589-1320, gnl|bosTau2|chr19 (50794146-50794884) | |
| 589-1320, gnl|Hg17|chr17 (70774645-70773929) | |
| 589-1320, gnl|Mm7|chr11 (115717660-115716987) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| mcp (0.170648) | |
| cli (0.152812) | |
| eep (0.122564) | |
| clu (0.119646) | |
| med (0.116252) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.170648) | |
| cli (0.152812) | |
| eep (0.122564) | |
| clu (0.119646) | |
| med (0.116252) | |
| jca (0.11396) | |
| eje (0.0988338) |