Non-Coding RNA Search

Ss1.1-Tra1-TCH01E050032.5.5

Sequence:


               
               AGATGCCATCTTTCCAGACACCCAAGAGAACCGAAGGATGTTTTCCAGCCTTTTCCAGTT
TTCAAACTGTTCCCAAGGGCAGCAGCTGGTGACATTCTCCAGTGACTGGGAGATCCAAGA
AGACAATAGGCTCATGTGCTCCTCGGTGCAGAAGGCCCTGTTTGAGGAGGAGGACCACGT
GAAGAAGCTGCAGCAGAAGGTGGCCACGCTGGAGAAGCGCAACAAGCAGCTGCGGGACCG
GGTGAAGAAGGTCAGGAGGTCCCTGCGGCAGGCGCGCAAGAACGGCCGCCACCTGGAGCT
GCTGAACCGGAAGCTGAGCGAGAAGCTGGCCGGCCCGCTCCCGCACATCAACGCGCTGGG
GCAGGAGCCCGCGCGTGCCCCCTACCTGCGGGGGTAGCGCGGCTGGAGCCGGGCCCTCCC
GCCGCAGAGGGGGCCTCTCACGGGGCGTGAAAGAGGGAGGCCGGGTTTGTACGTGCCCAT
AGTTCAAGAACTCCTGTAGATGATATTTTTATTCTGCATTCGGTAGCATCTAGTTGGTTT
CCAAGGCAAGTCTCACTGTCTCCTTGGCTGCAGGCTTCCTGTCCCTCCCTGGCCTGCTCC
TAGATCTGTCCTTGGTGCCATGGGGACTGTCCTCAGCTTCCAGAAGCAGCCTGGAAAGTA
CACTTATTAGGGAAAGAACGCTTTAGAATCTCTAGAGGTAAAAGAACCCAAGGCCTTTGG
CCTTGATTTCTGAAGAAAGGCAGTGTGGTCTCAGCTTAGAGCTGCAGGACAACCATTAGT
TTGGAGGAATGATTGGAAGCAAGTCAAGGAACCTTCTGGTGTCATTAAGACTTAATGAGC
TTATTACAGTTCTGGGAATGGAGTTGGGAATGGGGTGGCAGGTAATTAAACAAGATGAAT
TATGTGGGATTTCCAGCATCAGCTCCCCAGACTTGCAGAGGCTTCAGGAATTGCCTTTAT
GGGCCTGTCATGTCTCATCAAACCACGTTCCTAAGTTGAAAGAGCCTGAACAGTATTTCA
GCCACTGCTAAATTCTAGCTTACGGTTTGTGCAGTAATTGCTTCCAACTTCTCTGAATTT
GAGGCGAGCTGACCCAATACGCTGTGAACTTCAGTTGTGCAAAGATACTTCCTTACCTCC
TAGGAGCAGGTGACCTCGCCTCATCCCCATCTGGGGTCCCAAAGGCCTTGGTGCCGGCGG
TCTGGCCTTGGCTGCTTTAGGAAGGTATTTCCCACTCACCAGGACTGCCCAGACCCTGGG
GTAGTGTCTGCACATCAGCCCACTTCTCACTGCATCAGATCCTGTGTGTAATCACTTCAT
CGTCATTGGAAAGAAAACTTTAGACACAGTATTGCGAGTAAAAGGTACTGACGACACCTG
AGCCCTTGGCTTAGCCACACGGGATGGAGCCCAGTTGTGGGACGAAGAAGTCATTTCAGG
GACCACCTCTTGGTTATCCTCCAATCCAACCAATTTCTCTTCCCGGCTGGTCCAGGTGGA
AGCTGCTGGCCCCTCAGCAGGGCATGCTCTCCATGGACACCCCACCCCACTCCCCCAGAC
ACCGCAGGGCCTGATCCCGCCCTCCTCCCATTGGCAATGCCAGTGTCACATGTCCATCCA
CTGCCTTACTGCCTTTAGAAAAACCACGTCCCCGTGGCTCTGGCAGCCTGTCAGGGGCAT
AAGCCTTATGTTACCTGAGTCTTGGTGGCAGGTGATGGCCACAGGGGAGAAATCAATGCC
CTGGACTGCCCAGCATGGGGACTTCTGCTCAGGGCCCTTCCTAGCCAAGCTTCTGCCAGC
ACTTTATCACCGAATCCTTCATAGCGTGTAGAACACAAGGCGCGTCTTCTAGCTTATTCT
TCCTGGGGACGTGTCACTACAGCAGTTTTGCTGCCACCCGAGGGAATGACAAGCCTAAGG
GTGACGTGCAGCCCATGTCTGGAGAACTGTGGGAGCTGGATCTCTACGGATGCAGCACGT
TCTGCCTTTTCAATAAATACCAGCAATGTTTCGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATGCCATCTTTCCAGACACCCAAGAGAACCGAAGGATGTTTTCCAGCCTTTTCCAGTT
TTCAAACTGTTCCCAAGGGCAGCAGCTGGTGACATTCTCCAGTGACTGGGAGATCCAAGA
AGACAATAGGCTCATGTGCTCCTCGGTGCAGAAGGCCCTGTTTGAGGAGGAGGACCACGT
GAAGAAGCTGCAGCAGAAGGTGGCCACGCTGGAGAAGCGCAACAAGCAGCTGCGGGACCG
GGTGAAGAAGGTCAGGAGGTCCCTGCGGCAGGCGCGCAAGAACGGCCGCCACCTGGAGCT
GCTGAACCGGAAGCTGAGCGAGAAGCTGGCCGGCCCGCTCCCGCACATCAACGCGCTGGG
GCAGGAGCCCGCGCGTGCCCCCTACCTGCGGGGGTAGCGCGGCTGGAGCCGGGCCCTCCC
GCCGCAGAGGGGGCCTCTCACGGGGCGTGAAAGAGGGAGGCCGGGTTTGTACGTGCCCAT
AGTTCAAGAACTCCTGTAGATGATATTTTTATTCTGCATTCGGTAGCATCTAGTTGGTTT
CCAAGGCAAGTCTCACTGTCTCCTTGGCTGCAGGCTTCCTGTCCCTCCCTGGCCTGCTCC
TAGATCTGTCCTTGGTGCCATGGGGACTGTCCTCAGCTTCCAGAAGCAGCCTGGAAAGTA
CACTTATTAGGGAAAGAACGCTTTAGAATCTCTAGAGGTAAAAGAACCCAAGGCCTTTGG
CCTTGATTTCTGAAGAAAGGCAGTGTGGTCTCAGCTTAGAGCTGCAGGACAACCATTAGT
TTGGAGGAATGATTGGAAGCAAGTCAAGGAACCTTCTGGTGTCATTAAGACTTAATGAGC
TTATTACAGTTCTGGGAATGGAGTTGGGAATGGGGTGGCAGGTAATTAAACAAGATGAAT
TATGTGGGATTTCCAGCATCAGCTCCCCAGACTTGCAGAGGCTTCAGGAATTGCCTTTAT
GGGCCTGTCATGTCTCATCAAACCACGTTCCTAAGTTGAAAGAGCCTGAACAGTATTTCA
GCCACTGCTAAATTCTAGCTTACGGTTTGTGCAGTAATTGCTTCCAACTTCTCTGAATTT
GAGGCGAGCTGACCCAATACGCTGTGAACTTCAGTTGTGCAAAGATACTTCCTTACCTCC
TAGGAGCAGGTGACCTCGCCTCATCCCCATCTGGGGTCCCAAAGGCCTTGGTGCCGGCGG
TCTGGCCTTGGCTGCTTTAGGAAGGTATTTCCCACTCACCAGGACTGCCCAGACCCTGGG
GTAGTGTCTGCACATCAGCCCACTTCTCACTGCATCAGATCCTGTGTGTAATCACTTCAT
CGTCATTGGAAAGAAAACTTTAGACACAGTATTGCGAGTAAAAGGTACTGACGACACCTG
AGCCCTTGGCTTAGCCACACGGGATGGAGCCCAGTTGTGGGACGAAGAAGTCATTTCAGG
GACCACCTCTTGGTTATCCTCCAATCCAACCAATTTCTCTTCCCGGCTGGTCCAGGTGGA
AGCTGCTGGCCCCTCAGCAGGGCATGCTCTCCATGGACACCCCACCCCACTCCCCCAGAC
ACCGCAGGGCCTGATCCCGCCCTCCTCCCATTGGCAATGCCAGTGTCACATGTCCATCCA
CTGCCTTACTGCCTTTAGAAAAACCACGTCCCCGTGGCTCTGGCAGCCTGTCAGGGGCAT
AAGCCTTATGTTACCTGAGTCTTGGTGGCAGGTGATGGCCACAGGGGAGAAATCAATGCC
CTGGACTGCCCAGCATGGGGACTTCTGCTCAGGGCCCTTCCTAGCCAAGCTTCTGCCAGC
ACTTTATCACCGAATCCTTCATAGCGTGTAGAACACAAGGCGCGTCTTCTAGCTTATTCT
TCCTGGGGACGTGTCACTACAGCAGTTTTGCTGCCACCCGAGGGAATGACAAGCCTAAGG
GTGACGTGCAGCCCATGTCTGGAGAACTGTGGGAGCTGGATCTCTACGGATGCAGCACGT
TCTGCCTTTTCAATAAATACCAGCAATGTTTCGGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55958688|emb|CAI16545.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55958688|emb|CAI16545.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-159, + strand, RNAz p=0.937987

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, + strand, RNAz p=0.937987

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-159, gnl|bosTau2|chr3 (41789881-41790029)
               

               
               1-159, gnl|Hg17|chr10 (13080473-13080344)
               

               
               1-159, gnl|Mm7|chr2 (5058549-5058684)
               


               
               3-130, gnl|bosTau2|chr10 (21657750-21657877)
               

               
               3-130, gnl|Hg17|chr10 (13080471-13080344)
               

               
               3-130, gnl|Mm7|chr2 (5058551-5058678)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-159, gnl|bosTau2|chr3 (41789881-41790029)
               

               
               1-159, gnl|Hg17|chr10 (13080473-13080344)
               

               
               1-159, gnl|Mm7|chr2 (5058549-5058684)
               


               
               3-130, gnl|bosTau2|chr10 (21657750-21657877)
               

               
               3-130, gnl|Hg17|chr10 (13080471-13080344)
               

               
               3-130, gnl|Mm7|chr2 (5058551-5058678)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               eru (0.480192)
               

               
               eep (0.245128)
               

               
               cly (0.241284)
               

               
               cty (0.20816)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               ese (0.126502)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.480192)
               

               
               eep (0.245128)
               

               
               cly (0.241284)
               

               
               cty (0.20816)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               ese (0.126502)

	1-159, gnl\|bosTau2\|chr3 (41789881-41790029)
	1-159, gnl\|Hg17\|chr10 (13080473-13080344)
	1-159, gnl\|Mm7\|chr2 (5058549-5058684)

	3-130, gnl\|bosTau2\|chr10 (21657750-21657877)
	3-130, gnl\|Hg17\|chr10 (13080471-13080344)
	3-130, gnl\|Mm7\|chr2 (5058551-5058678)

	eru (0.480192)
	eep (0.245128)
	cly (0.241284)
	cty (0.20816)
	cag (0.151194)
	hyp (0.142837)
	lnt (0.142308)
	cov (0.132153)
	ese (0.126502)