Ss1.1-Tra1-TCH01E050046.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTCCTCCGCCTCCTCCGCCGCTCCCTTTGCGGCCGCCTTAACCTGGACCCGGACCCAGC CTCTCCCTTACCCGAACACCGGCCCCGGCTCCACCGAGGCCCCGGTCCCCCAACCCCGCC TCGCCGCCGCCATGGCGGACCCTAAATACGCCGACCTTCCCGGCATTGCCAGGAACGAGC CAGATGTTTATGAAACCAGCGACCTGCCTGAGGATGACCAAGCGGAGTTTGATGCGGAGG AGCTGACGAGTACAAGTGTGGAGCACATCATTGTCAATCCCAATGCTGCCTATGACAAGT TCAAAGACAAGAGAGTGGGAACAAAGGGCCTTGATTTCTCAGATCGAATTGGCAAAACCA AGAGAACAGGATATGAATCTGGAGAATATGAGATGCTTGGAGAGGGTCTGGGAGTGAAGG AGACACCTCAGCAAAAGTACCAGAGACTACTGCATGAGGTCCAAGAGCTGACAACTGAAG TCGAGAAGATCAAGATGACAGTGAAGGAGTCAGCCACCGAGGAGAAGCTGACCCCCGTGG TGCTGGCTAAACAGCTGGCAGCCCTGAAGCAGCAGCTGGTTGCTTCCCATCTGGAGAAGC TGCTGGGACCAGATGCCGCAATCAACCTTACTGACCCCGATGGAGCTCTGGCTAAGCGCC TACTGCTGCAGCTGGAAGCAACAAAGAACACCAAGGGGGCTGGTTCAGGGGGAAAGACCA CCAGTGGGAGCCCCCCAGATAGCAGCCTTGTCACTTACGAACTACATTCTCGGCCTGAGC AGGACAAGTTCTCCCAAGCTGCCAAAGTGGCAGAACTCGAGAAGCGTCTGACAGAGCTGG AAGCAACTGTACGCTGTGATCAGGATGCTCAGAATCCCCTTTCTGCAGGTCTGCAGGGAG CCTGCCTTATGGAGACTGTAGAGCTGTTGCAGGCGAAGGTGAGTGCCCTGGACCTCGCAG TTTTGGACCAAGTGGAGGCTCGGCTACAGAGTGTCCTGGGAAAAGTGAATGAGATTGCCA AGCATAAAGCTTCTGTAGAAGATGCAGATACACAAAGCAAGGTGCACCAGCTGTATGAAA CCATACAGCGCTGGAGCCCCATTGCCTCCACCCTTCCTGAGCTGGTGCAGAGACTCGTCA CCATCAAGCAGCTGCATGAACAAGCCATGCAGTTTGGTCAGCTTCTGACACACTTGGATA CCACACAGCAGATGATCGCTTGTTCCCTTAAGGACAACGCCACTCTCTTAACCCAGGTGC AGACAACGATGCGTGAAAACCTGTCCACAGTTGAGGGGAATTTTGCCAACATTGATGAAC GGATGAAGAAGCTGGGAAAGTGAGCACCTTTGGGAGATGGAGAACAGGGGTAATCCCTAC CCCTTTGAACTCCGTTAACACCTTACACAGGGTTTCCCCTTAACCATAACTCTCGCATCC CCATCCCATTTGACACTGGGGGCAAGGGGTTCTTCTTGCATGTGGGGCTTACACCCCTCC TCTGAAGAGTAGAGTGGTAGCTGGGGGATATTAGATGGTGGTCTCCCCTCAGGCCATGAG GATGAGGACCTGGGCCCAGCCACGTGCCAGCTTCTGTCCAGTACTGCTTTGCCTGGTGTG GGGAAGGGATGGGTCCTGTCCTCCAGCACAGCTTCTATGGCTGGTTATAATACTGTACAA CTGTTTCTGACCATTAAATGCTGTTGTACTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTCCTCCGCCTCCTCCGCCGCTCCCTTTGCGGCCGCCTTAACCTGGACCCGGACCCAGC CTCTCCCTTACCCGAACACCGGCCCCGGCTCCACCGAGGCCCCGGTCCCCCAACCCCGCC TCGCCGCCGCCATGGCGGACCCTAAATACGCCGACCTTCCCGGCATTGCCAGGAACGAGC CAGATGTTTATGAAACCAGCGACCTGCCTGAGGATGACCAAGCGGAGTTTGATGCGGAGG AGCTGACGAGTACAAGTGTGGAGCACATCATTGTCAATCCCAATGCTGCCTATGACAAGT TCAAAGACAAGAGAGTGGGAACAAAGGGCCTTGATTTCTCAGATCGAATTGGCAAAACCA AGAGAACAGGATATGAATCTGGAGAATATGAGATGCTTGGAGAGGGTCTGGGAGTGAAGG AGACACCTCAGCAAAAGTACCAGAGACTACTGCATGAGGTCCAAGAGCTGACAACTGAAG TCGAGAAGATCAAGATGACAGTGAAGGAGTCAGCCACCGAGGAGAAGCTGACCCCCGTGG TGCTGGCTAAACAGCTGGCAGCCCTGAAGCAGCAGCTGGTTGCTTCCCATCTGGAGAAGC TGCTGGGACCAGATGCCGCAATCAACCTTACTGACCCCGATGGAGCTCTGGCTAAGCGCC TACTGCTGCAGCTGGAAGCAACAAAGAACACCAAGGGGGCTGGTTCAGGGGGAAAGACCA CCAGTGGGAGCCCCCCAGATAGCAGCCTTGTCACTTACGAACTACATTCTCGGCCTGAGC AGGACAAGTTCTCCCAAGCTGCCAAAGTGGCAGAACTCGAGAAGCGTCTGACAGAGCTGG AAGCAACTGTACGCTGTGATCAGGATGCTCAGAATCCCCTTTCTGCAGGTCTGCAGGGAG CCTGCCTTATGGAGACTGTAGAGCTGTTGCAGGCGAAGGTGAGTGCCCTGGACCTCGCAG TTTTGGACCAAGTGGAGGCTCGGCTACAGAGTGTCCTGGGAAAAGTGAATGAGATTGCCA AGCATAAAGCTTCTGTAGAAGATGCAGATACACAAAGCAAGGTGCACCAGCTGTATGAAA CCATACAGCGCTGGAGCCCCATTGCCTCCACCCTTCCTGAGCTGGTGCAGAGACTCGTCA CCATCAAGCAGCTGCATGAACAAGCCATGCAGTTTGGTCAGCTTCTGACACACTTGGATA CCACACAGCAGATGATCGCTTGTTCCCTTAAGGACAACGCCACTCTCTTAACCCAGGTGC AGACAACGATGCGTGAAAACCTGTCCACAGTTGAGGGGAATTTTGCCAACATTGATGAAC GGATGAAGAAGCTGGGAAAGTGAGCACCTTTGGGAGATGGAGAACAGGGGTAATCCCTAC CCCTTTGAACTCCGTTAACACCTTACACAGGGTTTCCCCTTAACCATAACTCTCGCATCC CCATCCCATTTGACACTGGGGGCAAGGGGTTCTTCTTGCATGTGGGGCTTACACCCCTCC TCTGAAGAGTAGAGTGGTAGCTGGGGGATATTAGATGGTGGTCTCCCCTCAGGCCATGAG GATGAGGACCTGGGCCCAGCCACGTGCCAGCTTCTGTCCAGTACTGCTTTGCCTGGTGTG GGGAAGGGATGGGTCCTGTCCTCCAGCACAGCTTCTATGGCTGGTTATAATACTGTACAA CTGTTTCTGACCATTAAATGCTGTTGTACTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 2-1563, + strand, RNAz p=0.999546 | |
| 493-656, - strand, RNAz p=0.928647 | |
| 1060-1164, - strand, RNAz p=0.729114 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 2-1563, + strand, RNAz p=0.999546 | |
| 493-656, - strand, RNAz p=0.928647 | |
| 1060-1164, - strand, RNAz p=0.729114 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC000718, + |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 2-168, gnl|bosTau2|chr5 (34750771-34750937) | |
| 2-168, gnl|Hg17|chr12 (56227234-56227077) | |
| 2-168, gnl|Mm7|chr10 (126767773-126767931) | |
| 493-656, gnl|bosTau2|chr5 (34760800-34760963) | |
| 493-656, gnl|canFam2|chr10 (4606889-4607076) | |
| 493-656, gnl|danRer3|chrUn (40208953-40209121) | |
| 493-656, gnl|dasNov1|scaffold_5444 (40758-40569) | |
| 493-656, gnl|echTel1|scaffold_315420 (46822-46633) | |
| 493-656, gnl|fr1|chrUn (206091908-206092093) | |
| 493-656, gnl|hg17|chr12 (56214337-56214524) | |
| 493-656, gnl|Hg17|chr12 (56214504-56214341) | |
| 493-656, gnl|loxAfr1|scaffold_8302 (22617-22778) | |
| 493-656, gnl|mm7|chr10 (126777947-126777774) | |
| 493-656, gnl|Mm7|chr10 (126777778-126777941) | |
| 493-656, gnl|oryCun1|scaffold_138337 (18478-18291) | |
| 493-656, gnl|rheMac2|chr11 (54611759-54611945) | |
| 493-656, gnl|rn3|chr7 (67255108-67254932) | |
| 493-656, gnl|tetNig1|chr11 (2645740-2645555) | |
| 493-656, gnl|xenTro1|scaffold_34 (3226630-3226450) | |
| 1060-1164, gnl|bosTau2|chr5 (34762557-34762661) | |
| 1060-1164, gnl|canFam2|chr10 (4605177-4605306) | |
| 1060-1164, gnl|danRer3|chrUn (40202251-40202359) | |
| 1060-1164, gnl|echTel1|scaffold_315420 (48734-48608) | |
| 1060-1164, gnl|hg17|chr12 (56212262-56212391) | |
| 1060-1164, gnl|Hg17|chr12 (56212367-56212263) | |
| 1060-1164, gnl|loxAfr1|scaffold_6997 (35186-35057) | |
| 1060-1164, gnl|mm7|chr10 (126779621-126779495) | |
| 1060-1164, gnl|Mm7|chr10 (126779514-126779618) | |
| 1060-1164, gnl|panTro1|chr10 (57451457-57451586) | |
| 1060-1164, gnl|rheMac2|chr11 (54609692-54609821) | |
| 1060-1164, gnl|rn3|chr7 (67256756-67256629) | |
| 1060-1164, gnl|tetNig1|chr11 (2648408-2648289) | |
| 1060-1164, gnl|xenTro1|scaffold_34 (3232096-3231980) | |
| 1255-1712, gnl|bosTau2|chr5 (34763881-34764326) | |
| 1255-1712, gnl|Hg17|chr12 (56210827-56210362) | |
| 1255-1712, gnl|Mm7|chr10 (126782795-126783200) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-168, gnl|bosTau2|chr5 (34750771-34750937) | |
| 2-168, gnl|Hg17|chr12 (56227234-56227077) | |
| 2-168, gnl|Mm7|chr10 (126767773-126767931) | |
| 493-656, gnl|bosTau2|chr5 (34760800-34760963) | |
| 493-656, gnl|canFam2|chr10 (4606889-4607076) | |
| 493-656, gnl|danRer3|chrUn (40208953-40209121) | |
| 493-656, gnl|dasNov1|scaffold_5444 (40758-40569) | |
| 493-656, gnl|echTel1|scaffold_315420 (46822-46633) | |
| 493-656, gnl|fr1|chrUn (206091908-206092093) | |
| 493-656, gnl|hg17|chr12 (56214337-56214524) | |
| 493-656, gnl|Hg17|chr12 (56214504-56214341) | |
| 493-656, gnl|loxAfr1|scaffold_8302 (22617-22778) | |
| 493-656, gnl|mm7|chr10 (126777947-126777774) | |
| 493-656, gnl|Mm7|chr10 (126777778-126777941) | |
| 493-656, gnl|oryCun1|scaffold_138337 (18478-18291) | |
| 493-656, gnl|rheMac2|chr11 (54611759-54611945) | |
| 493-656, gnl|rn3|chr7 (67255108-67254932) | |
| 493-656, gnl|tetNig1|chr11 (2645740-2645555) | |
| 493-656, gnl|xenTro1|scaffold_34 (3226630-3226450) | |
| 1060-1164, gnl|bosTau2|chr5 (34762557-34762661) | |
| 1060-1164, gnl|canFam2|chr10 (4605177-4605306) | |
| 1060-1164, gnl|danRer3|chrUn (40202251-40202359) | |
| 1060-1164, gnl|echTel1|scaffold_315420 (48734-48608) | |
| 1060-1164, gnl|hg17|chr12 (56212262-56212391) | |
| 1060-1164, gnl|Hg17|chr12 (56212367-56212263) | |
| 1060-1164, gnl|loxAfr1|scaffold_6997 (35186-35057) | |
| 1060-1164, gnl|mm7|chr10 (126779621-126779495) | |
| 1060-1164, gnl|Mm7|chr10 (126779514-126779618) | |
| 1060-1164, gnl|panTro1|chr10 (57451457-57451586) | |
| 1060-1164, gnl|rheMac2|chr11 (54609692-54609821) | |
| 1060-1164, gnl|rn3|chr7 (67256756-67256629) | |
| 1060-1164, gnl|tetNig1|chr11 (2648408-2648289) | |
| 1060-1164, gnl|xenTro1|scaffold_34 (3232096-3231980) | |
| 1255-1712, gnl|bosTau2|chr5 (34763881-34764326) | |
| 1255-1712, gnl|Hg17|chr12 (56210827-56210362) | |
| 1255-1712, gnl|Mm7|chr10 (126782795-126783200) |
| Expressed library(ies): 32 entry(ies) | More info |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
| cbr (2.68748) | |
| fhi (0.847889) | |
| fcc (0.791139) | |
| ese (0.632511) | |
| nep (0.551775) | |
| hyp (0.42851) | |
| nmm (0.398406) | |
| cov (0.396458) | |
| clu (0.358938) | |
| ebs (0.354904) | |
| med (0.348756) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| mas (0.210305) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| nje (0.16592) | |
| nco (0.161734) | |
| fco (0.157208) | |
| cli (0.152812) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ute (0.132784) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (2.68748) | |
| fhi (0.847889) | |
| fcc (0.791139) | |
| ese (0.632511) | |
| nep (0.551775) | |
| hyp (0.42851) | |
| nmm (0.398406) | |
| cov (0.396458) | |
| clu (0.358938) | |
| ebs (0.354904) | |
| med (0.348756) | |
| lnt (0.284616) | |
| fce (0.271592) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| mas (0.210305) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| nje (0.16592) | |
| nco (0.161734) | |
| fco (0.157208) | |
| cli (0.152812) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ute (0.132784) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) | |
| jej (0.0989218) | |
| eje (0.0988338) |