Non-Coding RNA Search

Ss1.1-Tra1-TCH01E050047.5

Sequence:


               
               CCTCCCCTTCCCCGGCCTCCCCTCCGGCTTGGGCGGCCAGTGGCGTGGCGGGTTCCCGGA
GGGAGGCGAGAAAGAACGTGGGTCCCGCGGTGCAGCCGAGTGTCTGCCTCCTGCGCCGCA
GGTCATAAACGGGCGTCCTGCGGCCTTGGGCGCCAATTAGCGAACTGCGCCCCGAACCTT
CCAGAAAGCCCGACTGGGCGCGGACGGCCCCGACTCACAGCGTGGGAGGGGGAGGCCAGT
GAGGACTCGGACCTAGAGCGCCTGTCCCCCGAGTGCCAGCGCCGGCTCCTCCAGCTCCGC
AAATGTCCACCCTCTGTCAGAAGGAAACCAGGACACCTGCCACCTGTCTGGGATCAGGCT
CCACACAGGGCCTGCACAGTAGCAATGGGGATGATGTGGAAAGAGAATGCTCCAGAAAAC
CAGACCAGAAGCCACTGAAGTGCTATAGAGTGGGTGATCCCACCGCCATGTTCTCCCCCA
ACAGCCCCCACCTGTCCTCTAGAGGAAGCGTCATCAAATGGTTCTGGGATTCAGCTGAGG
AAGGCTACAGGACCTACCACATGGATGAGTATGATGAGGATAAGAACCCCAATGGCATCA
TTAACTTGGGTACCAGTGAGAACAAACTCTGCTTTGACCTGCTGACCAGGCGGCTGAGTC
AGAGTGACATGCTGTGGGTAGAGCCGTCCCTGCTGCAGTACCCTGACTGGAGGGGACATC
TGTTCCTCCGGGAGGAAGTGGCCAGGTTCCTGTCTTTCTACTGNCAGAGCCCTGCACCCC
TTAAACCGGAGAACGTGGTCGTTCTGAATGGCTGTGCCTCTCTCTTCTCTGCTCTGGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCCCCTTCCCCGGCCTCCCCTCCGGCTTGGGCGGCCAGTGGCGTGGCGGGTTCCCGGA
GGGAGGCGAGAAAGAACGTGGGTCCCGCGGTGCAGCCGAGTGTCTGCCTCCTGCGCCGCA
GGTCATAAACGGGCGTCCTGCGGCCTTGGGCGCCAATTAGCGAACTGCGCCCCGAACCTT
CCAGAAAGCCCGACTGGGCGCGGACGGCCCCGACTCACAGCGTGGGAGGGGGAGGCCAGT
GAGGACTCGGACCTAGAGCGCCTGTCCCCCGAGTGCCAGCGCCGGCTCCTCCAGCTCCGC
AAATGTCCACCCTCTGTCAGAAGGAAACCAGGACACCTGCCACCTGTCTGGGATCAGGCT
CCACACAGGGCCTGCACAGTAGCAATGGGGATGATGTGGAAAGAGAATGCTCCAGAAAAC
CAGACCAGAAGCCACTGAAGTGCTATAGAGTGGGTGATCCCACCGCCATGTTCTCCCCCA
ACAGCCCCCACCTGTCCTCTAGAGGAAGCGTCATCAAATGGTTCTGGGATTCAGCTGAGG
AAGGCTACAGGACCTACCACATGGATGAGTATGATGAGGATAAGAACCCCAATGGCATCA
TTAACTTGGGTACCAGTGAGAACAAACTCTGCTTTGACCTGCTGACCAGGCGGCTGAGTC
AGAGTGACATGCTGTGGGTAGAGCCGTCCCTGCTGCAGTACCCTGACTGGAGGGGACATC
TGTTCCTCCGGGAGGAAGTGGCCAGGTTCCTGTCTTTCTACTGNCAGAGCCCTGCACCCC
TTAAACCGGAGAACGTGGTCGTTCTGAATGGCTGTGCCTCTCTCTTCTCTGCTCTGGCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26333787|dbj|BAC30611.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26333787|dbj|BAC30611.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               375-494, - strand, RNAz p=0.58985
               

               
               417-512, - strand, RNAz p=0.723227

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               375-494, - strand, RNAz p=0.58985
               

               
               417-512, - strand, RNAz p=0.723227

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               296-594, gnl|bosTau2|chr15 (46012167-46011869)
               

               
               296-594, gnl|canFam2|chr18 (48198440-48198088)
               

               
               296-594, gnl|dasNov1|scaffold_33487 (2088-2429)
               

               
               296-594, gnl|galGal2|chr5 (18949207-18949560)
               

               
               296-594, gnl|hg17|chr11 (44045719-44046055)
               

               
               296-594, gnl|Hg17|chr11 (44045747-44046042)
               

               
               296-594, gnl|loxAfr1|scaffold_28284 (1960-2299)
               

               
               296-594, gnl|mm7|chr2 (93698959-93698621)
               

               
               296-594, gnl|Mm7|chr2 (93698930-93698632)
               

               
               296-594, gnl|monDom2|scaffold_33 (9462232-9462572)
               

               
               296-594, gnl|oryCun1|scaffold_69773 (4654-4321)
               

               
               296-594, gnl|panTro1|chr9 (44542710-44543046)
               

               
               296-594, gnl|rheMac2|chr14 (28044674-28044338)
               

               
               296-594, gnl|rn3|chr3 (78161790-78161452)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               296-594, gnl|bosTau2|chr15 (46012167-46011869)
               

               
               296-594, gnl|canFam2|chr18 (48198440-48198088)
               

               
               296-594, gnl|dasNov1|scaffold_33487 (2088-2429)
               

               
               296-594, gnl|galGal2|chr5 (18949207-18949560)
               

               
               296-594, gnl|hg17|chr11 (44045719-44046055)
               

               
               296-594, gnl|Hg17|chr11 (44045747-44046042)
               

               
               296-594, gnl|loxAfr1|scaffold_28284 (1960-2299)
               

               
               296-594, gnl|mm7|chr2 (93698959-93698621)
               

               
               296-594, gnl|Mm7|chr2 (93698930-93698632)
               

               
               296-594, gnl|monDom2|scaffold_33 (9462232-9462572)
               

               
               296-594, gnl|oryCun1|scaffold_69773 (4654-4321)
               

               
               296-594, gnl|panTro1|chr9 (44542710-44543046)
               

               
               296-594, gnl|rheMac2|chr14 (28044674-28044338)
               

               
               296-594, gnl|rn3|chr3 (78161790-78161452)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	375-494, - strand, RNAz p=0.58985
	417-512, - strand, RNAz p=0.723227

	296-594, gnl\|bosTau2\|chr15 (46012167-46011869)
	296-594, gnl\|canFam2\|chr18 (48198440-48198088)
	296-594, gnl\|dasNov1\|scaffold_33487 (2088-2429)
	296-594, gnl\|galGal2\|chr5 (18949207-18949560)
	296-594, gnl\|hg17\|chr11 (44045719-44046055)
	296-594, gnl\|Hg17\|chr11 (44045747-44046042)
	296-594, gnl\|loxAfr1\|scaffold_28284 (1960-2299)
	296-594, gnl\|mm7\|chr2 (93698959-93698621)
	296-594, gnl\|Mm7\|chr2 (93698930-93698632)
	296-594, gnl\|monDom2\|scaffold_33 (9462232-9462572)
	296-594, gnl\|oryCun1\|scaffold_69773 (4654-4321)
	296-594, gnl\|panTro1\|chr9 (44542710-44543046)
	296-594, gnl\|rheMac2\|chr14 (28044674-28044338)
	296-594, gnl\|rn3\|chr3 (78161790-78161452)