Non-Coding RNA Search

Ss1.1-Tra1-TCH01E050073.5

Sequence:


               
               GCTTGAGGATGTCCAGGTGCCCTCGGCGGCAGGCCCAGAACACAGGGGTCCTGTCCAGCT
GCAAAGCAAAAGCACCAAAGTAGCTGACACGGGAATGCCAGGCAGGGGGTCTGCCATGGG
CATGGGCCTTCCCCAGTTCTCACCAAGTCCCGAGCGTCCACAGTGGCCCCCGCCTCCAAA
AGCTTATTCACAAGCTGGCCGTGACCCTTCAGGCAGGCCCAGTGCAGGGCTGTGCGGTGG
AGCTGGGGGGTGGGGGGGTGGAGGAGGTTAGGCTCAGGGAGCATGTCACCCTCTGGAGGG
TCCAGCCCGGATCCCGTCCCTGGTGCCAGGTTCCCTGAACAGAGCTGCTATCTCTCCTGC
CACATGGAGGGCCCCTCCTTCCTGACCCAGGAGGCATCAGGATCTGTGCCCCCAAAACCA
GAAAGCCCTGCAGTTTCCTAGGTCCGGACTAGACCACACTGAAGGCCGCCTGCCTGCACC
CACTCCCGCTACCTGGTCGTGGGCATTGGGGTCCCCTCCATCTGCCAGGTACTTGTCAAT
CAGGGCTTCCTGGTTCTCAGCAGCTGCCTTCAGGAACACCTCCAGGTCCACGGGCTCCAG
CGGGGCTTCAGGCTGCGGCTTGACCTCAGGCTCAGGTGCCCTGGGGGGGACTCTGCGTTT
TAGTCGCTTTTCTCTCTGTCTTTGAACCAACTTTTCCAAGTCAGCCAGGTTCTCCAAGTT
AATTCTGGAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTGAGGATGTCCAGGTGCCCTCGGCGGCAGGCCCAGAACACAGGGGTCCTGTCCAGCT
GCAAAGCAAAAGCACCAAAGTAGCTGACACGGGAATGCCAGGCAGGGGGTCTGCCATGGG
CATGGGCCTTCCCCAGTTCTCACCAAGTCCCGAGCGTCCACAGTGGCCCCCGCCTCCAAA
AGCTTATTCACAAGCTGGCCGTGACCCTTCAGGCAGGCCCAGTGCAGGGCTGTGCGGTGG
AGCTGGGGGGTGGGGGGGTGGAGGAGGTTAGGCTCAGGGAGCATGTCACCCTCTGGAGGG
TCCAGCCCGGATCCCGTCCCTGGTGCCAGGTTCCCTGAACAGAGCTGCTATCTCTCCTGC
CACATGGAGGGCCCCTCCTTCCTGACCCAGGAGGCATCAGGATCTGTGCCCCCAAAACCA
GAAAGCCCTGCAGTTTCCTAGGTCCGGACTAGACCACACTGAAGGCCGCCTGCCTGCACC
CACTCCCGCTACCTGGTCGTGGGCATTGGGGTCCCCTCCATCTGCCAGGTACTTGTCAAT
CAGGGCTTCCTGGTTCTCAGCAGCTGCCTTCAGGAACACCTCCAGGTCCACGGGCTCCAG
CGGGGCTTCAGGCTGCGGCTTGACCTCAGGCTCAGGTGCCCTGGGGGGGACTCTGCGTTT
TAGTCGCTTTTCTCTCTGTCTTTGAACCAACTTTTCCAAGTCAGCCAGGTTCTCCAAGTT
AATTCTGGAACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|16552573|dbj|BAB71342.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|16552573|dbj|BAB71342.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-304, gnl|bosTau2|chr11 (3464035-3463739)
               

               
               3-304, gnl|Hg17|chr2 (96927886-96928182)
               

               
               3-304, gnl|Mm7|chr1 (36773536-36773840)
               


               
               471-620, gnl|bosTau2|chr11 (3463660-3463512)
               

               
               471-620, gnl|Hg17|chr2 (96928350-96928525)
               

               
               471-620, gnl|Mm7|chr1 (36773949-36774089)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-304, gnl|bosTau2|chr11 (3464035-3463739)
               

               
               3-304, gnl|Hg17|chr2 (96927886-96928182)
               

               
               3-304, gnl|Mm7|chr1 (36773536-36773840)
               


               
               471-620, gnl|bosTau2|chr11 (3463660-3463512)
               

               
               471-620, gnl|Hg17|chr2 (96928350-96928525)
               

               
               471-620, gnl|Mm7|chr1 (36773949-36774089)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ssp (0.13552)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.13552)

	3-304, gnl\|bosTau2\|chr11 (3464035-3463739)
	3-304, gnl\|Hg17\|chr2 (96927886-96928182)
	3-304, gnl\|Mm7\|chr1 (36773536-36773840)

	471-620, gnl\|bosTau2\|chr11 (3463660-3463512)
	471-620, gnl\|Hg17\|chr2 (96928350-96928525)
	471-620, gnl\|Mm7\|chr1 (36773949-36774089)