Non-Coding RNA Search

Ss1.1-Tra1-TCH01E050080.5

Sequence:


               
               GCCGCTCGGCGCCCTTATTTCGGCTGCGAGGGGCGGGTGCGCGCGTCAAGGCATAGAGAC
GGGCGTTGAGTTCTCGGGCTAGAGCGTCGCTGAGTCGGAGCCGGAGCCCGAGCCGCGCGC
GGTGTCTCCGCTGCGTCCGCCGAGGCCCCCGAGTGTCAGGGACAAAAGCCGCCGCCGCGC
CGCCTGCTCCCGCCGCCAGGGCTCATCCGCCGCCGCCGCCCTGAGGAGAGTCCGCCGCCG
TCGCCCCCCCGGAGGATCCGAGAGCCATGTCGGCCAGCAGCCTCTTGGAGCAGAGACCAA
AAGGTCAAGGAAACAAAGTGCAAAATGGATCTGTACATCAAAAGGATGGATTAAATGATG
ATGATTTTGAACCTTACTTGAGTCCACAGGCAAGGCCCAATAATGCATATACTGCCATGT
CAGATTCCTACTTACCCAGTTACTACAGTCCCTCCATTGGCTTCTCCTATTCTTTGGGTG
AAGCTGCTTGGTCTACTGGGGGTGATACAGCCATGCCCTATCTAACTTCTTATGGACAAC
TGAGCAACGGAGAGCCTCACTTCCTACCAGATGCAATGTTTGGACAACCAGGAGCCCTAG
GTAGCACTCCATTTCTTGGTCAGCATGGTTTTAATTTCTTTCCCAGCGGGATTGACTTCT
CAGCTTGGGGGAATAATAGTTCTCAGGGACAGTCTACTCAGAGCTCTGGATATAGTAGTA
ATTATGCTTATGCACCTAGCTCCTTAGGTGGAGCCATGATTGATGGACAGTCAGCTTTTG
CCAGTGAGACCCTCAATAAGGCTCCTGGCATGAATACTATAGACCAAGGGATGGCAGCAC
TAAAGTTGGGTAGCACAGAAGTTGCAAGCAATGTTCCAAAAGTTGTAGGCTCTGCTGTTG
GTAGTGGGTCCATTACTAGTAACATTGTGGCTTCCAGTAGTTTGCCTCCAGCTACGATTG
CTCCTCCAAAACCAGCATCTTGGGCTGATATTGCTAGCAAGCCTGCAAAACAACAACCCA
AGTTGAAGACCAAGAATGGCATTGCAGGGTCAAGTCTTCCACCACCCCCAATAAAGCATA
ACATGGATATTGGAACTTGGGATAACAAGGGTCCTGTGGCAAAAGCCCCCTCACAGGCTT
TGGTTCAGAATATAGGTCAGCAGCCAACCCAGGGGTCTCCCCAGCCTGTAGGTCAACAGG
CTACCAGTAGCCCACCAGTGGCTCAGGCATCAGTAGGGCAACAGACACAGCCATTGCCCC
CACCTCCACCACAGCCTACTCAGCTCTCAGTGCAGCAACAGGCAGCTCAGCCAACCCGCT
GGGTAGCACCTCGGAACCGTGGCAGTGGGTTCGGTCATAATGGGGTGGATGGTAATGGAG
TAGGACAGTCTCAGGCTGGATCTGGATCTACTCCTTCAGAACCTCACCCAGTTTTGGAGA
AGCTTCGGTCCATTAATAACTACAACCCCAAGGATTTTGACTGGAATCTGAAACATGGCC
GGGTTTTCATCATTAAGAGCTACTCTGAGGACGATATCCACCGTTCCATTAAGTATAACA
TCTGGTGCAGCACAGAGCATGGTAACAAGAGACTGGATGCTGCTTATCGCTCCATGAACG
GGAAGGGCCCCGTTTACTTACTTTTCAGTGTCAACGGCAGTGGACACTTCTGTGGCGTTG
CAGAGATGAAATCTGCTGTGGACTACAACACATGTGCAGGTGTATGGTCCCAGGACAAAT
GGAAGGGTCGTTTTGACGTCAGGTGGATTTTTGTGAAGGACGTTCCCAATAGCCAACTGC
GACACATTCGCCTGGAGAACAACGAGAATAAACCAGTGACCAACTCCAGGGACACTCAGG
AAGTGCCTCTGGAAAAGGCTAAGCAGGTGTTGAAAATCATAGCCAGCTACAAGCATACCA
CTTCCATTTTCGATGACTTCTCACACTATGAGAAACGCCAAGAGGAAGAAGAGAGTGTTA
AAAAGGAACGTCAAGGTCGTGGGAAATAAAAGGCAGTTCTGCACAGACTGCAGCAACGGT
TGCATCTGCATATCCTAAGAGGAAAAAAATGACCTTCAAGAGAATTAGGACTTTTTTCTT
AATTTCATTGACTTCAGAGACGATTGCAGACTTGCAGTTTAAGTATTGGAATTTCACAAA
AGACATAGGACTAAACTGGAAAACGAAAAAAAAAAAAAAAAGAAAAAGAAAAAACTAAAC
AAAAATTCCCTCTAGGTAGTTTAGGTGAAAAATGTCCCTTTTATTTTGGCTTTGGTTGTG
ATTTCAGAGCATAATGCTTTGGTTTTTTGTCTTTTTACTATGTTTTTCGGATTTTAAAGT
CCGTTAAGTGCATACAATTTTCTCTAATTTTTAAACCCTTTCCTCCCCCCATTTTGACAT
TTGCACTTGGAGAACACTTGAGTTTCGAAGGTTTTGGGCCTCCACCCCAGAAAGTGGGAA
TTTGGTTTTTCCCTTCCAAACTGGAAGAACATTTTTATGAAGAATTTTTGTCTTGGAGAA
TTTAACAGTGTTACCCAAGGTTGTGTCTTTAAGGGTGGTTCATTTTCTCTGACCCTTTGT
TACTCAAAGTAAAGTACTAGGAGTCCTAAGAAATGTTCTGTTCTTGTACATTATACTGAT
TAAGTCAGGATTAATTTGATTTCAAAGCTAAGAACAGTGGTAAAAACTTGTTTACAGAAA
TGCATTTTGGAAGAGAAAAATATTGTAAAACGTGTAGTGAATGTTTCTTCAGTTTCTTGT
TCAGCCAATGAGGAAAGGGCATTGCCTTTCTTTTTACCATTAATCACTTCTCAATAAACG
TGAGATCCTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGCTCGGCGCCCTTATTTCGGCTGCGAGGGGCGGGTGCGCGCGTCAAGGCATAGAGAC
GGGCGTTGAGTTCTCGGGCTAGAGCGTCGCTGAGTCGGAGCCGGAGCCCGAGCCGCGCGC
GGTGTCTCCGCTGCGTCCGCCGAGGCCCCCGAGTGTCAGGGACAAAAGCCGCCGCCGCGC
CGCCTGCTCCCGCCGCCAGGGCTCATCCGCCGCCGCCGCCCTGAGGAGAGTCCGCCGCCG
TCGCCCCCCCGGAGGATCCGAGAGCCATGTCGGCCAGCAGCCTCTTGGAGCAGAGACCAA
AAGGTCAAGGAAACAAAGTGCAAAATGGATCTGTACATCAAAAGGATGGATTAAATGATG
ATGATTTTGAACCTTACTTGAGTCCACAGGCAAGGCCCAATAATGCATATACTGCCATGT
CAGATTCCTACTTACCCAGTTACTACAGTCCCTCCATTGGCTTCTCCTATTCTTTGGGTG
AAGCTGCTTGGTCTACTGGGGGTGATACAGCCATGCCCTATCTAACTTCTTATGGACAAC
TGAGCAACGGAGAGCCTCACTTCCTACCAGATGCAATGTTTGGACAACCAGGAGCCCTAG
GTAGCACTCCATTTCTTGGTCAGCATGGTTTTAATTTCTTTCCCAGCGGGATTGACTTCT
CAGCTTGGGGGAATAATAGTTCTCAGGGACAGTCTACTCAGAGCTCTGGATATAGTAGTA
ATTATGCTTATGCACCTAGCTCCTTAGGTGGAGCCATGATTGATGGACAGTCAGCTTTTG
CCAGTGAGACCCTCAATAAGGCTCCTGGCATGAATACTATAGACCAAGGGATGGCAGCAC
TAAAGTTGGGTAGCACAGAAGTTGCAAGCAATGTTCCAAAAGTTGTAGGCTCTGCTGTTG
GTAGTGGGTCCATTACTAGTAACATTGTGGCTTCCAGTAGTTTGCCTCCAGCTACGATTG
CTCCTCCAAAACCAGCATCTTGGGCTGATATTGCTAGCAAGCCTGCAAAACAACAACCCA
AGTTGAAGACCAAGAATGGCATTGCAGGGTCAAGTCTTCCACCACCCCCAATAAAGCATA
ACATGGATATTGGAACTTGGGATAACAAGGGTCCTGTGGCAAAAGCCCCCTCACAGGCTT
TGGTTCAGAATATAGGTCAGCAGCCAACCCAGGGGTCTCCCCAGCCTGTAGGTCAACAGG
CTACCAGTAGCCCACCAGTGGCTCAGGCATCAGTAGGGCAACAGACACAGCCATTGCCCC
CACCTCCACCACAGCCTACTCAGCTCTCAGTGCAGCAACAGGCAGCTCAGCCAACCCGCT
GGGTAGCACCTCGGAACCGTGGCAGTGGGTTCGGTCATAATGGGGTGGATGGTAATGGAG
TAGGACAGTCTCAGGCTGGATCTGGATCTACTCCTTCAGAACCTCACCCAGTTTTGGAGA
AGCTTCGGTCCATTAATAACTACAACCCCAAGGATTTTGACTGGAATCTGAAACATGGCC
GGGTTTTCATCATTAAGAGCTACTCTGAGGACGATATCCACCGTTCCATTAAGTATAACA
TCTGGTGCAGCACAGAGCATGGTAACAAGAGACTGGATGCTGCTTATCGCTCCATGAACG
GGAAGGGCCCCGTTTACTTACTTTTCAGTGTCAACGGCAGTGGACACTTCTGTGGCGTTG
CAGAGATGAAATCTGCTGTGGACTACAACACATGTGCAGGTGTATGGTCCCAGGACAAAT
GGAAGGGTCGTTTTGACGTCAGGTGGATTTTTGTGAAGGACGTTCCCAATAGCCAACTGC
GACACATTCGCCTGGAGAACAACGAGAATAAACCAGTGACCAACTCCAGGGACACTCAGG
AAGTGCCTCTGGAAAAGGCTAAGCAGGTGTTGAAAATCATAGCCAGCTACAAGCATACCA
CTTCCATTTTCGATGACTTCTCACACTATGAGAAACGCCAAGAGGAAGAAGAGAGTGTTA
AAAAGGAACGTCAAGGTCGTGGGAAATAAAAGGCAGTTCTGCACAGACTGCAGCAACGGT
TGCATCTGCATATCCTAAGAGGAAAAAAATGACCTTCAAGAGAATTAGGACTTTTTTCTT
AATTTCATTGACTTCAGAGACGATTGCAGACTTGCAGTTTAAGTATTGGAATTTCACAAA
AGACATAGGACTAAACTGGAAAACGAAAAAAAAAAAAAAAAGAAAAAGAAAAAACTAAAC
AAAAATTCCCTCTAGGTAGTTTAGGTGAAAAATGTCCCTTTTATTTTGGCTTTGGTTGTG
ATTTCAGAGCATAATGCTTTGGTTTTTTGTCTTTTTACTATGTTTTTCGGATTTTAAAGT
CCGTTAAGTGCATACAATTTTCTCTAATTTTTAAACCCTTTCCTCCCCCCATTTTGACAT
TTGCACTTGGAGAACACTTGAGTTTCGAAGGTTTTGGGCCTCCACCCCAGAAAGTGGGAA
TTTGGTTTTTCCCTTCCAAACTGGAAGAACATTTTTATGAAGAATTTTTGTCTTGGAGAA
TTTAACAGTGTTACCCAAGGTTGTGTCTTTAAGGGTGGTTCATTTTCTCTGACCCTTTGT
TACTCAAAGTAAAGTACTAGGAGTCCTAAGAAATGTTCTGTTCTTGTACATTATACTGAT
TAAGTCAGGATTAATTTGATTTCAAAGCTAAGAACAGTGGTAAAAACTTGTTTACAGAAA
TGCATTTTGGAAGAGAAAAATATTGTAAAACGTGTAGTGAATGTTTCTTCAGTTTCTTGT
TCAGCCAATGAGGAAAGGGCATTGCCTTTCTTTTTACCATTAATCACTTCTCAATAAACG
TGAGATCCTGTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5VSZ9_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5VSZ9_HUMAN

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               438-2679, - strand, RNAz p=0.769151
               

               
               1149-1298, - strand, RNAz p=0.928458
               

               
               1810-1929, + strand, RNAz p=0.669187

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               438-2679, - strand, RNAz p=0.769151
               

               
               1149-1298, - strand, RNAz p=0.928458
               

               
               1810-1929, + strand, RNAz p=0.669187

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-293, gnl|bosTau2|chr2 (76890399-76890694)
               

               
               1-293, gnl|Hg17|chr1 (28883988-28884275)
               

               
               1-293, gnl|Mm7|chr4 (131426622-131426319)
               


               
               399-1972, gnl|bosTau2|chr14 (17428227-17426642)
               

               
               399-1972, gnl|Hg17|chr8 (64261260-64262844)
               

               
               399-1972, gnl|Mm7|chr3 (15914302-15915887)
               


               
               2404-2832, gnl|bosTau2|chr10 (60665749-60666172)
               

               
               2404-2832, gnl|Hg17|chr14 (38755684-38756108)
               

               
               2404-2832, gnl|Mm7|chr4 (131400911-131400491)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-293, gnl|bosTau2|chr2 (76890399-76890694)
               

               
               1-293, gnl|Hg17|chr1 (28883988-28884275)
               

               
               1-293, gnl|Mm7|chr4 (131426622-131426319)
               


               
               399-1972, gnl|bosTau2|chr14 (17428227-17426642)
               

               
               399-1972, gnl|Hg17|chr8 (64261260-64262844)
               

               
               399-1972, gnl|Mm7|chr3 (15914302-15915887)
               


               
               2404-2832, gnl|bosTau2|chr10 (60665749-60666172)
               

               
               2404-2832, gnl|Hg17|chr14 (38755684-38756108)
               

               
               2404-2832, gnl|Mm7|chr4 (131400911-131400491)

Expressed library(ies): 26 entry(ies)

More info

Expressed library(ies): 26 entry(ies)

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               pro (0.512033)
               

               
               ski (0.440205)
               

               
               eye (0.341006)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               clu (0.239292)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               fty (0.17584)
               

               
               nje (0.16592)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               ski (0.440205)
               

               
               eye (0.341006)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               lyg (0.266205)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               clu (0.239292)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               spc (0.226732)
               

               
               hea (0.204499)
               

               
               fty (0.17584)
               

               
               nje (0.16592)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	438-2679, - strand, RNAz p=0.769151
	1149-1298, - strand, RNAz p=0.928458
	1810-1929, + strand, RNAz p=0.669187

	1-293, gnl\|bosTau2\|chr2 (76890399-76890694)
	1-293, gnl\|Hg17\|chr1 (28883988-28884275)
	1-293, gnl\|Mm7\|chr4 (131426622-131426319)

	399-1972, gnl\|bosTau2\|chr14 (17428227-17426642)
	399-1972, gnl\|Hg17\|chr8 (64261260-64262844)
	399-1972, gnl\|Mm7\|chr3 (15914302-15915887)

	2404-2832, gnl\|bosTau2\|chr10 (60665749-60666172)
	2404-2832, gnl\|Hg17\|chr14 (38755684-38756108)
	2404-2832, gnl\|Mm7\|chr4 (131400911-131400491)

	pro (0.512033)
	ski (0.440205)
	eye (0.341006)
	fce (0.271592)
	ste (0.270416)
	lyg (0.266205)
	ova (0.258264)
	sug (0.254582)
	clu (0.239292)
	pgl (0.236967)
	mgp (0.230681)
	spc (0.226732)
	hea (0.204499)
	fty (0.17584)
	nje (0.16592)
	isp (0.150376)
	spl (0.143184)
	lnt (0.142308)
	csk (0.140746)
	pla (0.133672)
	thg (0.126791)
	ese (0.126502)
	cly (0.120642)
	eru (0.120048)
	jca (0.11396)
	ldo (0.0970026)