Non-Coding RNA Search

Ss1.1-Tra1-TCH01E060041.5

Sequence:


               
               CTCTTTAAGGCACTTGTTTTTACAGGATTACCTTAGAAAGAGGAAGAAAGAGCACTTCTT
AAAATCCCAGGGTCCAGCTCCCTGGCCAATTCTGTTATGGGAAAGAGAGTGACTCTGATA
CAAAACAGTAACAAGTGGCTGAATCAAACACTTCCCGCCCCCCTGGTGCCACTGGCCTCC
TCACTGGCAGTGGTCAGACCGCACATCTGTACAGACGCTGGACAAGGTCCCACGGCATCC
TCCCGCCGGGACTGGGTGAATGGGGGTGACAGTGGCTCCCTCGCAGGGGGCCCACAGGGA
CCACGGTCCTGCCTGGCTCTGCGGGCGGGCGCCGGCCCTCATCCCGGCTCCCGGCTGGGT
CATCGCGGTGCTGGTGCAGACAGGACGGGGTCAACCTCGGGCCTTGGGAAGAGCAGCGGG
TCATCAGGAAGCTCCCGACCCGGGCACGTCCTCGTCCCAGGAAATGAGGGACACAGGGTC
GCTGCTCCCGCTCTCCCGCCGGGAGGCCCGGGCCTGCTGCTCTTCCTCCACCAGGTCGGC
CACCAGGTTCAGGCGGCAGGCCCTGAGCGCATCCACCAGGTGGGACACGGCCGCGTCCTC
CCTCCTGCTGTTCTTCCAGACTCGCAGCGACTCCCTCACCTGCTCGGTCAGGTTTCGGGG
ATACTTCTCCTCGATGGCGTCGATCTTGGCGTCAGACACTTTAAGCTGCCGAGCCAGCCG
CCTCCAGTCCTTCCCCACGTTGTCGCAGATGATATCAAACGCTGCCCGCAGGTCTCGCTC
CTCCGGCGCCGCCCCGCCCGCCGCGCCCGCCTCGAAGGCGTCCAGGCGCCGCAGCAGGTC
CTGGCGCCGCAGGGAGACGAGCAGCTCGCGCAGCAGCGCAGTGTGCTCGGGACTCAGCTC
GTTCTGCTCCAGGAGCACGGAGAAGAGGTCCACGCCGCTCTGCACGCGCTCCAGCTTCCT
CTTGCCCACGCGTCCCTGGCACAGGAACTTGAGCTCGGTCAGCTCGCTGCTTGACAGGCT
GGCCGACACCGAGTGCAGCAGCACCAGGAACGGGTCCATGGCGGCGGGTGCGGGCTGCTG
CCCGCTCGCCGGCCCGCGCTCCGGCAGACCGGGTCCCCCGCCTCCTCACGCGCCGGAGCT
CCTCCGTCTGGCAGCCGCAGCTCCCACTTTGCCCGCCCTGCGCCCCGCCACCGGAAGTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTTTAAGGCACTTGTTTTTACAGGATTACCTTAGAAAGAGGAAGAAAGAGCACTTCTT
AAAATCCCAGGGTCCAGCTCCCTGGCCAATTCTGTTATGGGAAAGAGAGTGACTCTGATA
CAAAACAGTAACAAGTGGCTGAATCAAACACTTCCCGCCCCCCTGGTGCCACTGGCCTCC
TCACTGGCAGTGGTCAGACCGCACATCTGTACAGACGCTGGACAAGGTCCCACGGCATCC
TCCCGCCGGGACTGGGTGAATGGGGGTGACAGTGGCTCCCTCGCAGGGGGCCCACAGGGA
CCACGGTCCTGCCTGGCTCTGCGGGCGGGCGCCGGCCCTCATCCCGGCTCCCGGCTGGGT
CATCGCGGTGCTGGTGCAGACAGGACGGGGTCAACCTCGGGCCTTGGGAAGAGCAGCGGG
TCATCAGGAAGCTCCCGACCCGGGCACGTCCTCGTCCCAGGAAATGAGGGACACAGGGTC
GCTGCTCCCGCTCTCCCGCCGGGAGGCCCGGGCCTGCTGCTCTTCCTCCACCAGGTCGGC
CACCAGGTTCAGGCGGCAGGCCCTGAGCGCATCCACCAGGTGGGACACGGCCGCGTCCTC
CCTCCTGCTGTTCTTCCAGACTCGCAGCGACTCCCTCACCTGCTCGGTCAGGTTTCGGGG
ATACTTCTCCTCGATGGCGTCGATCTTGGCGTCAGACACTTTAAGCTGCCGAGCCAGCCG
CCTCCAGTCCTTCCCCACGTTGTCGCAGATGATATCAAACGCTGCCCGCAGGTCTCGCTC
CTCCGGCGCCGCCCCGCCCGCCGCGCCCGCCTCGAAGGCGTCCAGGCGCCGCAGCAGGTC
CTGGCGCCGCAGGGAGACGAGCAGCTCGCGCAGCAGCGCAGTGTGCTCGGGACTCAGCTC
GTTCTGCTCCAGGAGCACGGAGAAGAGGTCCACGCCGCTCTGCACGCGCTCCAGCTTCCT
CTTGCCCACGCGTCCCTGGCACAGGAACTTGAGCTCGGTCAGCTCGCTGCTTGACAGGCT
GGCCGACACCGAGTGCAGCAGCACCAGGAACGGGTCCATGGCGGCGGGTGCGGGCTGCTG
CCCGCTCGCCGGCCCGCGCTCCGGCAGACCGGGTCCCCCGCCTCCTCACGCGCCGGAGCT
CCTCCGTCTGGCAGCCGCAGCTCCCACTTTGCCCGCCCTGCGCCCCGCCACCGGAAGTCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q56VC2_PIG

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q56VC2_PIG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               774-1068, gnl|bosTau2|chr29 (41330395-41330102)
               

               
               774-1068, gnl|Hg17|chr11 (69727499-69727199)
               

               
               774-1068, gnl|Mm7|chr7 (141007348-141007642)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               774-1068, gnl|bosTau2|chr29 (41330395-41330102)
               

               
               774-1068, gnl|Hg17|chr11 (69727499-69727199)
               

               
               774-1068, gnl|Mm7|chr7 (141007348-141007642)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               duo (0.345602)
               

               
               mcp (0.341297)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               clu (0.119646)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.345602)
               

               
               mcp (0.341297)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               clu (0.119646)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	774-1068, gnl\|bosTau2\|chr29 (41330395-41330102)
	774-1068, gnl\|Hg17\|chr11 (69727499-69727199)
	774-1068, gnl\|Mm7\|chr7 (141007348-141007642)

	duo (0.345602)
	mcp (0.341297)
	nje (0.16592)
	cag (0.151194)
	pty (0.142714)
	clu (0.119646)
	cty (0.10408)
	jej (0.0989218)