Ss1.1-Tra1-TCH01E060050.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTTCTAGTGTTTTGGCTATGGGGCTGTGGAAGGTGTGGAGCTTCATGTCCAGGTTTAAT TCATCCAAAAGGACTAATACCATACTGCAGCATTTGACAATGTCTAAGCACACGGATGCA GCAGCAGAAGTCCTATTGGAGAGAAAAGGTTGTGCAGGAGTGATAACACTAAACAGACCA AAGTTCCTAAATGCACTGAATCTGAGTATGATTCGGCAAATCTACCCACAGCTAAAGAAG TGGGAACAAGATCCAGAAACATTCCTGATCATCATGAAGGGAGCTGGTGAAAAGGCTTTC TGTGCTGGGGGTGATATCAGAGTGATCTCAGAAAATACAAAGACAAACCCAAAGATGGTT CAAGATTTTTTCAGAGAGGAGTATATGCTGAACAATGCCATTGATTCTTGCCTGAAACCA TATATTGCACTTATTCATGGAATAACAATGGGTGGGGGAGTTGGTCTCCTCAGTTCATGG GCAATTCCGAGTGGCTACCGAAAATCTCTTTTTGCAATGCCAGAAACAGCAATAGGGCTA TTCCCTGATGTGGGTGGAGGTTATTTCTTGCCACGACTTCAAGGAAAACTGGGATACTTC CTTGCGTTAACAGGTTTCAGACTGAAAGGAAGAGATGTGTACACAGCAGGAATTGCTACA CACTTTGTAGATTCCGAAAAGTTGGGCATGTTAGAAGATGATCTGTTAGCCCTGAACTCT CCTTCAAAAGAAAATATTGCAGATGTCTTAGAAACTTACCACACAAAGTCCAAGATTGAT CAAGACAAATCTTTTATCCTTGAGGAACACATGGACAAAATAAACAGTTGGTTCTCAGCC AATACTGTGGAAGAGATTATTGAAAATTTGCAGCAAGATGGTTCATCTTTTGCCCTAGAG CAGTTAAAGGTAATTAATAAAATGTCTCCAACATCCCTGAAGATCACACTAAGGCAACTC ATGGAAGGATCTTCAAAGACCTTGCCAGAAGTATTAACTATGGAATATCGGCTCAGTCAA GCTTGTATAGGAGGCCATGACTTTCATGAAGGCGTTAGGGCAGTTTTAATAGATAAAGAC CAGAATCCCAAGTGGAAACCAGCTAATCTAAAAGAAGTTACTGATGAAGATTTGAATAAT CACTTCAACTCTCTGGGAAGTAATGATTTGAAATTTTGAAGTAACTGGATTTTTAAACTA ATGGGCCAAAGCTGGCCTGCTGCCTCATTTTTTTTTGGGCCAAAGCTGGCCTGCTGCCTC ATTTTTTTTTTTTTTAAATATATCTGGTTGGGGAAAGAAATCAAAGACCAGTATTGCATG GCATGTGAAAATTACATGAAATTGAAATATCACTGTCCATAAATAAAGTTTTATTGGAAC ATGGCCTTAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTTCTAGTGTTTTGGCTATGGGGCTGTGGAAGGTGTGGAGCTTCATGTCCAGGTTTAAT TCATCCAAAAGGACTAATACCATACTGCAGCATTTGACAATGTCTAAGCACACGGATGCA GCAGCAGAAGTCCTATTGGAGAGAAAAGGTTGTGCAGGAGTGATAACACTAAACAGACCA AAGTTCCTAAATGCACTGAATCTGAGTATGATTCGGCAAATCTACCCACAGCTAAAGAAG TGGGAACAAGATCCAGAAACATTCCTGATCATCATGAAGGGAGCTGGTGAAAAGGCTTTC TGTGCTGGGGGTGATATCAGAGTGATCTCAGAAAATACAAAGACAAACCCAAAGATGGTT CAAGATTTTTTCAGAGAGGAGTATATGCTGAACAATGCCATTGATTCTTGCCTGAAACCA TATATTGCACTTATTCATGGAATAACAATGGGTGGGGGAGTTGGTCTCCTCAGTTCATGG GCAATTCCGAGTGGCTACCGAAAATCTCTTTTTGCAATGCCAGAAACAGCAATAGGGCTA TTCCCTGATGTGGGTGGAGGTTATTTCTTGCCACGACTTCAAGGAAAACTGGGATACTTC CTTGCGTTAACAGGTTTCAGACTGAAAGGAAGAGATGTGTACACAGCAGGAATTGCTACA CACTTTGTAGATTCCGAAAAGTTGGGCATGTTAGAAGATGATCTGTTAGCCCTGAACTCT CCTTCAAAAGAAAATATTGCAGATGTCTTAGAAACTTACCACACAAAGTCCAAGATTGAT CAAGACAAATCTTTTATCCTTGAGGAACACATGGACAAAATAAACAGTTGGTTCTCAGCC AATACTGTGGAAGAGATTATTGAAAATTTGCAGCAAGATGGTTCATCTTTTGCCCTAGAG CAGTTAAAGGTAATTAATAAAATGTCTCCAACATCCCTGAAGATCACACTAAGGCAACTC ATGGAAGGATCTTCAAAGACCTTGCCAGAAGTATTAACTATGGAATATCGGCTCAGTCAA GCTTGTATAGGAGGCCATGACTTTCATGAAGGCGTTAGGGCAGTTTTAATAGATAAAGAC CAGAATCCCAAGTGGAAACCAGCTAATCTAAAAGAAGTTACTGATGAAGATTTGAATAAT CACTTCAACTCTCTGGGAAGTAATGATTTGAAATTTTGAAGTAACTGGATTTTTAAACTA ATGGGCCAAAGCTGGCCTGCTGCCTCATTTTTTTTTGGGCCAAAGCTGGCCTGCTGCCTC ATTTTTTTTTTTTTTAAATATATCTGGTTGGGGAAAGAAATCAAAGACCAGTATTGCATG GCATGTGAAAATTACATGAAATTGAAATATCACTGTCCATAAATAAAGTTTTATTGGAAC ATGGCCTTAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
| 96-237, gnl|bosTau2|chr2 (5622626-5622485) | |
| 96-237, gnl|canFam2|chr37 (3920943-3921138) | |
| 96-237, gnl|dasNov1|scaffold_24727 (4981-4811) | |
| 96-237, gnl|fr1|chrUn (213013118-213012944) | |
| 96-237, gnl|hg17|chr2 (190987044-190987218) | |
| 96-237, gnl|Hg17|chr2 (190987186-190987045) | |
| 96-237, gnl|loxAfr1|scaffold_1090 (56846-56672) | |
| 96-237, gnl|mm7|chr1 (53093690-53093521) | |
| 96-237, gnl|Mm7|chr1 (53093549-53093687) | |
| 96-237, gnl|monDom2|scaffold_2 (95915126-95915307) | |
| 96-237, gnl|oryCun1|scaffold_189577 (4110-4281) | |
| 96-237, gnl|panTro1|chr13 (80860692-80860866) | |
| 96-237, gnl|rheMac2|chr12 (53990267-53990441) | |
| 96-237, gnl|rn3|chr9 (45624485-45624654) | |
| 96-237, gnl|tetNig1|chr2 (18314214-18314046) | |
| 534-681, gnl|bosTau2|chr2 (5521189-5521042) | |
| 534-681, gnl|canFam2|chr37 (3876946-3877103) | |
| 534-681, gnl|canFam2|chr37 (3876953-3877097) | |
| 534-681, gnl|danRer3|chr12 (10932169-10932326) | |
| 534-681, gnl|danRer3|chr12 (10932176-10932323) | |
| 534-681, gnl|dasNov1|scaffold_28815 (7608-7450) | |
| 534-681, gnl|dasNov1|scaffold_28815 (7601-7454) | |
| 534-681, gnl|echTel1|scaffold_279519 (9571-9726) | |
| 534-681, gnl|echTel1|scaffold_279519 (9578-9723) | |
| 534-681, gnl|fr1|chrUn (213019173-213019018) | |
| 534-681, gnl|fr1|chrUn (213019166-213019019) | |
| 534-681, gnl|galGal2|chr7 (133356-133203) | |
| 534-681, gnl|hg17|chr2 (190942388-190942545) | |
| 534-681, gnl|Hg17|chr2 (190942541-190942394) | |
| 534-681, gnl|hg17|chr5 (2841057-2841204) | |
| 534-681, gnl|loxAfr1|scaffold_1090 (87582-87425) | |
| 534-681, gnl|loxAfr1|scaffold_1090 (87573-87428) | |
| 534-681, gnl|mm7|chr1 (53134863-53134670) | |
| 534-681, gnl|mm7|chr1 (9593954-9593807) | |
| 534-681, gnl|Mm7|chr1 (53134708-53134855) | |
| 534-681, gnl|monDom2|scaffold_2 (95867218-95867376) | |
| 534-681, gnl|monDom2|scaffold_2 (95867226-95867371) | |
| 534-681, gnl|panTro1|chr13 (80816128-80816285) | |
| 534-681, gnl|panTro1|chr4 (2938585-2938732) | |
| 534-681, gnl|rheMac2|chr12 (53944717-53944874) | |
| 534-681, gnl|rheMac2|chr6 (2688437-2688582) | |
| 534-681, gnl|rn3|chr9 (45584862-45585019) | |
| 534-681, gnl|rn3|chr9 (45584869-45585016) | |
| 534-681, gnl|tetNig1|chr2 (18317702-18317545) | |
| 534-681, gnl|tetNig1|chr2 (18317695-18317548) | |
| 534-681, gnl|xenTro1|scaffold_941 (91498-91662) | |
| 904-1028, gnl|bosTau2|chr2 (5501332-5501207) | |
| 904-1028, gnl|Hg17|chr2 (190903314-190903189) | |
| 904-1028, gnl|Mm7|chr1 (53147247-53147371) | |
| 1090-1383, gnl|bosTau2|chr10 (21411783-21411480) | |
| 1090-1383, gnl|Hg17|chr5 (2840647-2840338) | |
| 1090-1383, gnl|Mm7|chr1 (53153811-53154072) |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 96-237, gnl|bosTau2|chr2 (5622626-5622485) | |
| 96-237, gnl|canFam2|chr37 (3920943-3921138) | |
| 96-237, gnl|dasNov1|scaffold_24727 (4981-4811) | |
| 96-237, gnl|fr1|chrUn (213013118-213012944) | |
| 96-237, gnl|hg17|chr2 (190987044-190987218) | |
| 96-237, gnl|Hg17|chr2 (190987186-190987045) | |
| 96-237, gnl|loxAfr1|scaffold_1090 (56846-56672) | |
| 96-237, gnl|mm7|chr1 (53093690-53093521) | |
| 96-237, gnl|Mm7|chr1 (53093549-53093687) | |
| 96-237, gnl|monDom2|scaffold_2 (95915126-95915307) | |
| 96-237, gnl|oryCun1|scaffold_189577 (4110-4281) | |
| 96-237, gnl|panTro1|chr13 (80860692-80860866) | |
| 96-237, gnl|rheMac2|chr12 (53990267-53990441) | |
| 96-237, gnl|rn3|chr9 (45624485-45624654) | |
| 96-237, gnl|tetNig1|chr2 (18314214-18314046) | |
| 534-681, gnl|bosTau2|chr2 (5521189-5521042) | |
| 534-681, gnl|canFam2|chr37 (3876946-3877103) | |
| 534-681, gnl|canFam2|chr37 (3876953-3877097) | |
| 534-681, gnl|danRer3|chr12 (10932169-10932326) | |
| 534-681, gnl|danRer3|chr12 (10932176-10932323) | |
| 534-681, gnl|dasNov1|scaffold_28815 (7608-7450) | |
| 534-681, gnl|dasNov1|scaffold_28815 (7601-7454) | |
| 534-681, gnl|echTel1|scaffold_279519 (9571-9726) | |
| 534-681, gnl|echTel1|scaffold_279519 (9578-9723) | |
| 534-681, gnl|fr1|chrUn (213019173-213019018) | |
| 534-681, gnl|fr1|chrUn (213019166-213019019) | |
| 534-681, gnl|galGal2|chr7 (133356-133203) | |
| 534-681, gnl|hg17|chr2 (190942388-190942545) | |
| 534-681, gnl|Hg17|chr2 (190942541-190942394) | |
| 534-681, gnl|hg17|chr5 (2841057-2841204) | |
| 534-681, gnl|loxAfr1|scaffold_1090 (87582-87425) | |
| 534-681, gnl|loxAfr1|scaffold_1090 (87573-87428) | |
| 534-681, gnl|mm7|chr1 (53134863-53134670) | |
| 534-681, gnl|mm7|chr1 (9593954-9593807) | |
| 534-681, gnl|Mm7|chr1 (53134708-53134855) | |
| 534-681, gnl|monDom2|scaffold_2 (95867218-95867376) | |
| 534-681, gnl|monDom2|scaffold_2 (95867226-95867371) | |
| 534-681, gnl|panTro1|chr13 (80816128-80816285) | |
| 534-681, gnl|panTro1|chr4 (2938585-2938732) | |
| 534-681, gnl|rheMac2|chr12 (53944717-53944874) | |
| 534-681, gnl|rheMac2|chr6 (2688437-2688582) | |
| 534-681, gnl|rn3|chr9 (45584862-45585019) | |
| 534-681, gnl|rn3|chr9 (45584869-45585016) | |
| 534-681, gnl|tetNig1|chr2 (18317702-18317545) | |
| 534-681, gnl|tetNig1|chr2 (18317695-18317548) | |
| 534-681, gnl|xenTro1|scaffold_941 (91498-91662) | |
| 904-1028, gnl|bosTau2|chr2 (5501332-5501207) | |
| 904-1028, gnl|Hg17|chr2 (190903314-190903189) | |
| 904-1028, gnl|Mm7|chr1 (53147247-53147371) | |
| 1090-1383, gnl|bosTau2|chr10 (21411783-21411480) | |
| 1090-1383, gnl|Hg17|chr5 (2840647-2840338) | |
| 1090-1383, gnl|Mm7|chr1 (53153811-53154072) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| kid (0.259471) | |
| hea (0.204499) | |
| col (0.195008) | |
| rec (0.17307) | |
| eye (0.170503) | |
| fat (0.147427) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ret (0.128733) | |
| sug (0.127291) | |
| tra (0.123092) | |
| pgl (0.118483) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| kid (0.259471) | |
| hea (0.204499) | |
| col (0.195008) | |
| rec (0.17307) | |
| eye (0.170503) | |
| fat (0.147427) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ret (0.128733) | |
| sug (0.127291) | |
| tra (0.123092) | |
| pgl (0.118483) |