Ss1.1-Tra1-TCH01E060099.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCTCGGCGTGGACTGCGCGAGGGAAAAGATGGCGGCGATGGCGGTCGGCGGTGCCGGTG GAAGCCGCGTGTCCAGCGGGAGGGACCTGAATTGCGTCCCCGAAATAGCTGACACACTGG GGGCTGTGGCCAAGCAGGGGTTTGATTTCCTCTGCATGCCTGTCTTCCACCCGCGTTTCA AGAGGGAGTTCACTCAGGAACCTGCTAAGAATCGGCCGGGTCCCCAGACACGATCAGACC TACTGCTGTCAGGAAGGGACTGGAATACACTAATTGTGGGCAAGCTTTCCCCATGGATTC GTCCAGACTCAAAAGTGGAGAAGATCCGCAGGAACTCTGAGGCGGCTATGTTACAGGAGC TGAATTTTGGGGCCTATTTGGGTCTTCCAGCTTTCCTGCTGCCCCTAAATCAGGAAGATA ACACAAACTTGGCAAGAGTTTTGACTAATCACATCCACACTGGCCACCACTCCTCCATGT TCTGGATGCGGGTGCCATTGGTGGCACCAGAGGACCTAAGAGATGATATAATCGAGAATG CACCAGCATCACACACAGAGGAGTACAGCGGAGAGGAGAAGACGTGGATGTGGTGGCACA ACTTCCGAACCTTGTGTGACTATAGCAAAAGGATTGCGGTGGCTCTTGAAATTGGTGCTG ACCTTCCATCTAATCATGTCATTGATCGTTGGCTTGGGGAGCCCATCAAAGCAGCCATTC TCCCCACCAGCATTTTCCTGACCAATAAGAAGGGATTTCCTGTTCTTTCTAAGATGCATC AGAGGCTGATCTTCCGACTCCTCAAGTTGGAGGTGCAGTTCATCATTACAGGCACCAACC ACCACTCAGAGAAGGAGTTCTGCTCCTACCTCCAATACTTAGAATACTTGAGCCAGAACC GACCTCCACCCAATGCCTACGAACTCTTTGCCAAGGGCTATGAAGACTACCTGCAGTCCC CACTCCAGCCACTGATGGATAATCTGGAATCTCAAACATATGAAGTGTTTGAAAAGGACC CCATCAAATACTCTCAATACCAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCTCGGCGTGGACTGCGCGAGGGAAAAGATGGCGGCGATGGCGGTCGGCGGTGCCGGTG GAAGCCGCGTGTCCAGCGGGAGGGACCTGAATTGCGTCCCCGAAATAGCTGACACACTGG GGGCTGTGGCCAAGCAGGGGTTTGATTTCCTCTGCATGCCTGTCTTCCACCCGCGTTTCA AGAGGGAGTTCACTCAGGAACCTGCTAAGAATCGGCCGGGTCCCCAGACACGATCAGACC TACTGCTGTCAGGAAGGGACTGGAATACACTAATTGTGGGCAAGCTTTCCCCATGGATTC GTCCAGACTCAAAAGTGGAGAAGATCCGCAGGAACTCTGAGGCGGCTATGTTACAGGAGC TGAATTTTGGGGCCTATTTGGGTCTTCCAGCTTTCCTGCTGCCCCTAAATCAGGAAGATA ACACAAACTTGGCAAGAGTTTTGACTAATCACATCCACACTGGCCACCACTCCTCCATGT TCTGGATGCGGGTGCCATTGGTGGCACCAGAGGACCTAAGAGATGATATAATCGAGAATG CACCAGCATCACACACAGAGGAGTACAGCGGAGAGGAGAAGACGTGGATGTGGTGGCACA ACTTCCGAACCTTGTGTGACTATAGCAAAAGGATTGCGGTGGCTCTTGAAATTGGTGCTG ACCTTCCATCTAATCATGTCATTGATCGTTGGCTTGGGGAGCCCATCAAAGCAGCCATTC TCCCCACCAGCATTTTCCTGACCAATAAGAAGGGATTTCCTGTTCTTTCTAAGATGCATC AGAGGCTGATCTTCCGACTCCTCAAGTTGGAGGTGCAGTTCATCATTACAGGCACCAACC ACCACTCAGAGAAGGAGTTCTGCTCCTACCTCCAATACTTAGAATACTTGAGCCAGAACC GACCTCCACCCAATGCCTACGAACTCTTTGCCAAGGGCTATGAAGACTACCTGCAGTCCC CACTCCAGCCACTGATGGATAATCTGGAATCTCAAACATATGAAGTGTTTGAAAAGGACC CCATCAAATACTCTCAATACCAGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 692-809, - strand, RNAz p=0.891174 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 692-809, - strand, RNAz p=0.891174 |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 1-141, gnl|bosTau2|chr10 (14106978-14107118) | |
| 1-141, gnl|canFam2|chr8 (6260437-6260544) | |
| 1-141, gnl|danRer3|chr2 (34020339-34020235) | |
| 1-141, gnl|dasNov1|scaffold_16655 (45792-45899) | |
| 1-141, gnl|echTel1|scaffold_305738 (6077-5970) | |
| 1-141, gnl|fr1|chrUn (36763539-36763457) | |
| 1-141, gnl|hg17|chr14 (22468297-22468404) | |
| 1-141, gnl|Hg17|chr14 (22468439-22468299) | |
| 1-141, gnl|loxAfr1|scaffold_17053 (41306-41199) | |
| 1-141, gnl|mm7|chr14 (49384976-49385083) | |
| 1-141, gnl|Mm7|chr14 (49385118-49384978) | |
| 1-141, gnl|monDom2|scaffold_12 (26921710-26921603) | |
| 1-141, gnl|oryCun1|scaffold_201448 (37557-37450) | |
| 1-141, gnl|panTro1|chr15 (21432025-21432132) | |
| 1-141, gnl|rheMac2|chr7 (85748600-85748707) | |
| 1-141, gnl|rn3|chr15 (32599909-32600016) | |
| 1-141, gnl|tetNig1|chr15 (2085478-2085396) | |
| 1-141, gnl|xenTro1|scaffold_963 (308697-308797) | |
| 344-485, gnl|bosTau2|chr10 (14108452-14108593) | |
| 344-485, gnl|canFam2|chr8 (6258931-6259123) | |
| 344-485, gnl|danRer3|chr2 (34025856-34025696) | |
| 344-485, gnl|dasNov1|scaffold_16655 (44232-44424) | |
| 344-485, gnl|fr1|chrUn (36764473-36764306) | |
| 344-485, gnl|hg17|chr14 (22466562-22466758) | |
| 344-485, gnl|Hg17|chr14 (22466710-22466569) | |
| 344-485, gnl|loxAfr1|scaffold_17053 (42855-42685) | |
| 344-485, gnl|mm7|chr14 (49383023-49383196) | |
| 344-485, gnl|Mm7|chr14 (49383171-49383030) | |
| 344-485, gnl|monDom2|scaffold_12 (26923078-26922904) | |
| 344-485, gnl|oryCun1|scaffold_201448 (39022-38874) | |
| 344-485, gnl|panTro1|chr15 (21430286-21430486) | |
| 344-485, gnl|rheMac2|chr7 (85746855-85747063) | |
| 344-485, gnl|rn3|chr15 (32598111-32598309) | |
| 344-485, gnl|tetNig1|chr15 (2086386-2086239) | |
| 344-485, gnl|xenTro1|scaffold_963 (306124-306314) | |
| 639-809, gnl|bosTau2|chr10 (14109637-14109807) | |
| 639-809, gnl|canFam2|chr8 (6257033-6257246) | |
| 639-809, gnl|danRer3|chr2 (34032698-34032482) | |
| 639-809, gnl|dasNov1|scaffold_16655 (42925-43138) | |
| 639-809, gnl|echTel1|scaffold_305738 (8685-8468) | |
| 639-809, gnl|fr1|chrUn (36765057-36764855) | |
| 639-809, gnl|hg17|chr14 (22465177-22465389) | |
| 639-809, gnl|Hg17|chr14 (22465349-22465179) | |
| 639-809, gnl|loxAfr1|scaffold_17053 (44694-44391) | |
| 639-809, gnl|mm7|chr14 (49381019-49381228) | |
| 639-809, gnl|Mm7|chr14 (49381191-49381021) | |
| 639-809, gnl|monDom2|scaffold_12 (26924264-26924050) | |
| 639-809, gnl|oryCun1|scaffold_201448 (40323-40111) | |
| 639-809, gnl|panTro1|chr15 (21428914-21429126) | |
| 639-809, gnl|rheMac2|chr7 (85745509-85745720) | |
| 639-809, gnl|rn3|chr15 (32596057-32596266) | |
| 639-809, gnl|tetNig1|chr15 (2086972-2086775) | |
| 639-809, gnl|xenTro1|scaffold_963 (305341-305571) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-141, gnl|bosTau2|chr10 (14106978-14107118) | |
| 1-141, gnl|canFam2|chr8 (6260437-6260544) | |
| 1-141, gnl|danRer3|chr2 (34020339-34020235) | |
| 1-141, gnl|dasNov1|scaffold_16655 (45792-45899) | |
| 1-141, gnl|echTel1|scaffold_305738 (6077-5970) | |
| 1-141, gnl|fr1|chrUn (36763539-36763457) | |
| 1-141, gnl|hg17|chr14 (22468297-22468404) | |
| 1-141, gnl|Hg17|chr14 (22468439-22468299) | |
| 1-141, gnl|loxAfr1|scaffold_17053 (41306-41199) | |
| 1-141, gnl|mm7|chr14 (49384976-49385083) | |
| 1-141, gnl|Mm7|chr14 (49385118-49384978) | |
| 1-141, gnl|monDom2|scaffold_12 (26921710-26921603) | |
| 1-141, gnl|oryCun1|scaffold_201448 (37557-37450) | |
| 1-141, gnl|panTro1|chr15 (21432025-21432132) | |
| 1-141, gnl|rheMac2|chr7 (85748600-85748707) | |
| 1-141, gnl|rn3|chr15 (32599909-32600016) | |
| 1-141, gnl|tetNig1|chr15 (2085478-2085396) | |
| 1-141, gnl|xenTro1|scaffold_963 (308697-308797) | |
| 344-485, gnl|bosTau2|chr10 (14108452-14108593) | |
| 344-485, gnl|canFam2|chr8 (6258931-6259123) | |
| 344-485, gnl|danRer3|chr2 (34025856-34025696) | |
| 344-485, gnl|dasNov1|scaffold_16655 (44232-44424) | |
| 344-485, gnl|fr1|chrUn (36764473-36764306) | |
| 344-485, gnl|hg17|chr14 (22466562-22466758) | |
| 344-485, gnl|Hg17|chr14 (22466710-22466569) | |
| 344-485, gnl|loxAfr1|scaffold_17053 (42855-42685) | |
| 344-485, gnl|mm7|chr14 (49383023-49383196) | |
| 344-485, gnl|Mm7|chr14 (49383171-49383030) | |
| 344-485, gnl|monDom2|scaffold_12 (26923078-26922904) | |
| 344-485, gnl|oryCun1|scaffold_201448 (39022-38874) | |
| 344-485, gnl|panTro1|chr15 (21430286-21430486) | |
| 344-485, gnl|rheMac2|chr7 (85746855-85747063) | |
| 344-485, gnl|rn3|chr15 (32598111-32598309) | |
| 344-485, gnl|tetNig1|chr15 (2086386-2086239) | |
| 344-485, gnl|xenTro1|scaffold_963 (306124-306314) | |
| 639-809, gnl|bosTau2|chr10 (14109637-14109807) | |
| 639-809, gnl|canFam2|chr8 (6257033-6257246) | |
| 639-809, gnl|danRer3|chr2 (34032698-34032482) | |
| 639-809, gnl|dasNov1|scaffold_16655 (42925-43138) | |
| 639-809, gnl|echTel1|scaffold_305738 (8685-8468) | |
| 639-809, gnl|fr1|chrUn (36765057-36764855) | |
| 639-809, gnl|hg17|chr14 (22465177-22465389) | |
| 639-809, gnl|Hg17|chr14 (22465349-22465179) | |
| 639-809, gnl|loxAfr1|scaffold_17053 (44694-44391) | |
| 639-809, gnl|mm7|chr14 (49381019-49381228) | |
| 639-809, gnl|Mm7|chr14 (49381191-49381021) | |
| 639-809, gnl|monDom2|scaffold_12 (26924264-26924050) | |
| 639-809, gnl|oryCun1|scaffold_201448 (40323-40111) | |
| 639-809, gnl|panTro1|chr15 (21428914-21429126) | |
| 639-809, gnl|rheMac2|chr7 (85745509-85745720) | |
| 639-809, gnl|rn3|chr15 (32596057-32596266) | |
| 639-809, gnl|tetNig1|chr15 (2086972-2086775) | |
| 639-809, gnl|xenTro1|scaffold_963 (305341-305571) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| ece (0.229305) | |
| nep (0.183925) | |
| nca (0.136874) | |
| pla (0.133672) | |
| cov (0.132153) | |
| ebs (0.118301) | |
| ecc (0.115035) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| nep (0.183925) | |
| nca (0.136874) | |
| pla (0.133672) | |
| cov (0.132153) | |
| ebs (0.118301) | |
| ecc (0.115035) |