Non-Coding RNA Search

Ss1.1-Tra1-TCH01E070015.5

Sequence:


               
               AATGTCTGTCGTGCTGCGTGATCTCTTCAGTGTCACTCTGTACCCTCCACATATACCCCT
TAAAAAAAAAAAAAAAAAAAAAAAAGAATCGTACGTCGACTTCCAATTTTTCACAGCCTC
AGCCTAGCAAAAATGGTCCATGGGATAAACAGCTGGTATTTGTATCTAAAACTCAGATTG
GTCACATCAATGCCACGGCATTCCCAAATTTTGATTTCGATTAACATTGACAGGATTACT
GTGTTTAATTTTTTAAAAAACTGAACACTGTGATTATGGGGTTTTGTAATTTAGCAGAAC
TCTTACTGGTAGAAAAAAAAAAATAGACCTGAATTATGTGTAACTTTTTGGAAAGTTTAA
TCCAATATCAAAATAGTCACTGAAATACAGTTCCATTGTAAAGTTGTACAGAAAGTTATA
GAGATTATATTGTGACACTGGGACTTGGAGTGAGACACCTTGGTTGGCATTCGAGTTTCA
TCGTAATTCACAGTAATTCTGCTCATTCTGTTCAGGGCTTGTAGACCCTTGACTGGTTGG
GGCTGTTGCCACTCCAAAGTTGCTGACTGCAGATGGCCACAGCGCCTTCCTCCAAGGAAA
CTCGAAGCCAGAAATTAACATTCTTTGTGGCAGATAACTGGGTTATGACACCATGAAAAG
GTCCAGTGCTCATAGACCACTCGTGACTCAAACCCCTTTCCTACAGCAGCGTGTTACTGA
CTGGCAACTTGCGCCTCAGTGGTGGCATCTGTTTTCCTTGAAACCACAAGCGAGAGAAGA
AAAAAAGCCGTGTATCTTAGGAATGGCCTTATCTGGTTCTTGGGTGAACCCTTTTAAGAA
TCATGTTCTGCAGAGATTGCCTTTCACTTGAGGAGTAAGTACTCAGTCTGGGTTCTTCCT
AGCTCGGGGCCTTTTAGTTTGAAAATCTTAACATTCTTCCCCACTGTCCTTTTTTGACTG
TTGACTTTGGTTTTCTCTTCCCTCTCTAAATTTCTGTCCTCCCTTCTGCTTCCTTACATT
GTTTTTTTCCTTCTGATTTCTCTCTCGGCCCTTTGTTTCTAGTTTAATACTATATGGGCA
GGGACAGGGGCCCTGGAGGGGGTGAGAGGCGTTGGTGAGCGCTTGAGTGAGCCAGCCTTG
CTTCAGAGAGTCGAAAAGAGCTTCCCACGTCACAGCTCTGTCTTCCTCCAGTTCTCTGCA
CAGTGGTTGCTCTCCAGTCGTACCAAGATCTGAATCAAAAAAGTATTTTAAAATATCCAT
GCTTTCTCTTTATTGCAACCAGCCCTGATAATGCTTGTTAGCACCTGTCACCAGCTCTCC
CAAGTGTGCCCATCCAGTCAAGTTCACAGACATGTTTCAGCAAGACCCTGTGCTGCAGGG
AAGTTGCATGAACACTGCAATGGGGAGAGTCAAGAATAGCCAGGCCTACCAGTCTCACAG
TATCCCCCCTTCTCCCTCGAACATTCCACATAGCCGTAGTGTCCATCTGTTTGTCCATCT
GCTGAAATGAGAAAAGAAACATTCATGCACTGATTTCAAACAAACCGAAAGAAAAAAGAA
AAAAAAAAAGAAACCCTCTCTCCTTTCTAGCTGAACAAAAATGTGCAGTTCATACTTGGC
GCTTGAAAATGCAGTAGTGACTGTGGAACGAGCCTGTCTGTATATCTGGTAGCTCTCTCT
TGCTTTGTTTTTCCTTACCAGTATTCTGCCTCACGTTTGCTTCTGTGATGGTTATATTGC
CTAGCAAGCACACCCGTGGTTGTGAAAATAGTATAGCAAAAAAGAAAAAAACCCCGGTTA
TTGATGTACTAGATTTGTGTATGTCTTTTAAACATTTCTAGGTTCCACCTTCTACAGAAT
AATCAGGAAACGTGTAAAAACTCAAAAGTGAAATAAAAAATTTTATCAGTTAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGTCTGTCGTGCTGCGTGATCTCTTCAGTGTCACTCTGTACCCTCCACATATACCCCT
TAAAAAAAAAAAAAAAAAAAAAAAAGAATCGTACGTCGACTTCCAATTTTTCACAGCCTC
AGCCTAGCAAAAATGGTCCATGGGATAAACAGCTGGTATTTGTATCTAAAACTCAGATTG
GTCACATCAATGCCACGGCATTCCCAAATTTTGATTTCGATTAACATTGACAGGATTACT
GTGTTTAATTTTTTAAAAAACTGAACACTGTGATTATGGGGTTTTGTAATTTAGCAGAAC
TCTTACTGGTAGAAAAAAAAAAATAGACCTGAATTATGTGTAACTTTTTGGAAAGTTTAA
TCCAATATCAAAATAGTCACTGAAATACAGTTCCATTGTAAAGTTGTACAGAAAGTTATA
GAGATTATATTGTGACACTGGGACTTGGAGTGAGACACCTTGGTTGGCATTCGAGTTTCA
TCGTAATTCACAGTAATTCTGCTCATTCTGTTCAGGGCTTGTAGACCCTTGACTGGTTGG
GGCTGTTGCCACTCCAAAGTTGCTGACTGCAGATGGCCACAGCGCCTTCCTCCAAGGAAA
CTCGAAGCCAGAAATTAACATTCTTTGTGGCAGATAACTGGGTTATGACACCATGAAAAG
GTCCAGTGCTCATAGACCACTCGTGACTCAAACCCCTTTCCTACAGCAGCGTGTTACTGA
CTGGCAACTTGCGCCTCAGTGGTGGCATCTGTTTTCCTTGAAACCACAAGCGAGAGAAGA
AAAAAAGCCGTGTATCTTAGGAATGGCCTTATCTGGTTCTTGGGTGAACCCTTTTAAGAA
TCATGTTCTGCAGAGATTGCCTTTCACTTGAGGAGTAAGTACTCAGTCTGGGTTCTTCCT
AGCTCGGGGCCTTTTAGTTTGAAAATCTTAACATTCTTCCCCACTGTCCTTTTTTGACTG
TTGACTTTGGTTTTCTCTTCCCTCTCTAAATTTCTGTCCTCCCTTCTGCTTCCTTACATT
GTTTTTTTCCTTCTGATTTCTCTCTCGGCCCTTTGTTTCTAGTTTAATACTATATGGGCA
GGGACAGGGGCCCTGGAGGGGGTGAGAGGCGTTGGTGAGCGCTTGAGTGAGCCAGCCTTG
CTTCAGAGAGTCGAAAAGAGCTTCCCACGTCACAGCTCTGTCTTCCTCCAGTTCTCTGCA
CAGTGGTTGCTCTCCAGTCGTACCAAGATCTGAATCAAAAAAGTATTTTAAAATATCCAT
GCTTTCTCTTTATTGCAACCAGCCCTGATAATGCTTGTTAGCACCTGTCACCAGCTCTCC
CAAGTGTGCCCATCCAGTCAAGTTCACAGACATGTTTCAGCAAGACCCTGTGCTGCAGGG
AAGTTGCATGAACACTGCAATGGGGAGAGTCAAGAATAGCCAGGCCTACCAGTCTCACAG
TATCCCCCCTTCTCCCTCGAACATTCCACATAGCCGTAGTGTCCATCTGTTTGTCCATCT
GCTGAAATGAGAAAAGAAACATTCATGCACTGATTTCAAACAAACCGAAAGAAAAAAGAA
AAAAAAAAAGAAACCCTCTCTCCTTTCTAGCTGAACAAAAATGTGCAGTTCATACTTGGC
GCTTGAAAATGCAGTAGTGACTGTGGAACGAGCCTGTCTGTATATCTGGTAGCTCTCTCT
TGCTTTGTTTTTCCTTACCAGTATTCTGCCTCACGTTTGCTTCTGTGATGGTTATATTGC
CTAGCAAGCACACCCGTGGTTGTGAAAATAGTATAGCAAAAAAGAAAAAAACCCCGGTTA
TTGATGTACTAGATTTGTGTATGTCTTTTAAACATTTCTAGGTTCCACCTTCTACAGAAT
AATCAGGAAACGTGTAAAAACTCAAAAGTGAAATAAAAAATTTTATCAGTTAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               231-335, + strand, RNAz p=0.973958
               

               
               988-1105, - strand, RNAz p=0.764635
               

               
               1485-1640, - strand, RNAz p=0.835493

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               231-335, + strand, RNAz p=0.973958
               

               
               988-1105, - strand, RNAz p=0.764635
               

               
               1485-1640, - strand, RNAz p=0.835493

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1912, gnl|bosTau2|chr13 (55854359-55852471)
               

               
               1-1912, gnl|Hg17|chr20 (42968492-42970575)
               

               
               1-1912, gnl|Mm7|chr2 (163757614-163759478)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1912, gnl|bosTau2|chr13 (55854359-55852471)
               

               
               1-1912, gnl|Hg17|chr20 (42968492-42970575)
               

               
               1-1912, gnl|Mm7|chr2 (163757614-163759478)

Expressed library(ies): 63 entry(ies)

More info

Expressed library(ies): 63 entry(ies)

Help | Less info


               
               ebs (1.30131)
               

               
               fce (1.08637)
               

               
               fbs (1.05208)
               

               
               cty (1.0408)
               

               
               hyp (0.999857)
               

               
               fcc (0.988924)
               

               
               duo (0.864006)
               

               
               cbe (0.717703)
               

               
               ece (0.687916)
               

               
               fhi (0.678311)
               

               
               hea (0.613497)
               

               
               clu (0.598229)
               

               
               pgl (0.592417)
               

               
               lin (0.582411)
               

               
               lnt (0.569233)
               

               
               spc (0.566829)
               

               
               mgm (0.541028)
               

               
               gul (0.532765)
               

               
               thg (0.507164)
               

               
               fco (0.471624)
               

               
               cag (0.453583)
               

               
               ski (0.440205)
               

               
               tes (0.415628)
               

               
               lyg (0.399308)
               

               
               bla (0.373042)
               

               
               fty (0.351679)
               

               
               ill (0.351185)
               

               
               sin (0.349895)
               

               
               sme (0.305437)
               

               
               spl (0.286369)
               

               
               ssp (0.271039)
               

               
               pla (0.267344)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               eru (0.240096)
               

               
               med (0.232504)
               

               
               jca (0.22792)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               cbr (0.127975)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)

Expressed library(ies): 63 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (1.30131)
               

               
               fce (1.08637)
               

               
               fbs (1.05208)
               

               
               cty (1.0408)
               

               
               hyp (0.999857)
               

               
               fcc (0.988924)
               

               
               duo (0.864006)
               

               
               cbe (0.717703)
               

               
               ece (0.687916)
               

               
               fhi (0.678311)
               

               
               hea (0.613497)
               

               
               clu (0.598229)
               

               
               pgl (0.592417)
               

               
               lin (0.582411)
               

               
               lnt (0.569233)
               

               
               spc (0.566829)
               

               
               mgm (0.541028)
               

               
               gul (0.532765)
               

               
               thg (0.507164)
               

               
               fco (0.471624)
               

               
               cag (0.453583)
               

               
               ski (0.440205)
               

               
               tes (0.415628)
               

               
               lyg (0.399308)
               

               
               bla (0.373042)
               

               
               fty (0.351679)
               

               
               ill (0.351185)
               

               
               sin (0.349895)
               

               
               sme (0.305437)
               

               
               spl (0.286369)
               

               
               ssp (0.271039)
               

               
               pla (0.267344)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               eru (0.240096)
               

               
               med (0.232504)
               

               
               jca (0.22792)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               ton (0.1755)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               cbr (0.127975)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)

	231-335, + strand, RNAz p=0.973958
	988-1105, - strand, RNAz p=0.764635
	1485-1640, - strand, RNAz p=0.835493

	1-1912, gnl\|bosTau2\|chr13 (55854359-55852471)
	1-1912, gnl\|Hg17\|chr20 (42968492-42970575)
	1-1912, gnl\|Mm7\|chr2 (163757614-163759478)

	ebs (1.30131)
	fce (1.08637)
	fbs (1.05208)
	cty (1.0408)
	hyp (0.999857)
	fcc (0.988924)
	duo (0.864006)
	cbe (0.717703)
	ece (0.687916)
	fhi (0.678311)
	hea (0.613497)
	clu (0.598229)
	pgl (0.592417)
	lin (0.582411)
	lnt (0.569233)
	spc (0.566829)
	mgm (0.541028)
	gul (0.532765)
	thg (0.507164)
	fco (0.471624)
	cag (0.453583)
	ski (0.440205)
	tes (0.415628)
	lyg (0.399308)
	bla (0.373042)
	fty (0.351679)
	ill (0.351185)
	sin (0.349895)
	sme (0.305437)
	spl (0.286369)
	ssp (0.271039)
	pla (0.267344)
	ova (0.258264)
	ret (0.257467)
	eru (0.240096)
	med (0.232504)
	jca (0.22792)
	eje (0.197668)
	aor (0.195274)
	col (0.195008)
	nlu (0.191681)
	cmu (0.186393)
	ton (0.1755)
	rec (0.17307)
	eye (0.170503)
	csp (0.161186)
	mga (0.160205)
	eli (0.151814)
	lun (0.150489)
	fat (0.147427)
	cst (0.140036)
	hlv (0.139256)
	che (0.136314)
	ute (0.132784)
	cov (0.132153)
	kid (0.129735)
	cbr (0.127975)
	sug (0.127291)
	tra (0.123092)
	eep (0.122564)
	ecc (0.115035)
	cbl (0.114797)
	nbm (0.0993246)