Ss1.1-Tra1-TCH01E070044.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGTGAATGGCAAGGAGAACTCCATCTGGGAGCTTCTCTACCAGTCACAGAAAAAGTTTG GAAAAAGCAATCCACAGGAGTTCCAGCTCTTTGGCTCTCCTGGTCAGCAGAAGGACCTCC TGTTTAGAGACGCTACCATCGGGTTTTTGAAGATCCCCTCAAAGATAGATTCTAAGCTGT ACCTGGGCCTCCCGTACCTTACTGCCATCCAGGGCCTGAGGGAAACGGCAGCGGAGGTGG AGGCGCGGCAGGCGAAGGTCGTGTGGTGCGCCGTGGGTCCAGAGGAGCTGCGCAAGTGCC GGCAGTGGAGCAGCCAGAGCAGCCAGAACCTGAACTGCAGCCTGGCCTCCACCACCGAGG ACTGCATCGTCCAGGTGCTGAAAGGAGAAGCTGATGCTATGAGCTTGGATGGAGGATTTA TCTACACTGCGGGCAAGTGTGGTTTGGTGCCTGTCCTGGCAGAGAACCAAAAATCTCGCC AAAGCAGTAGCTCAGACTGTGTGCATAGACCAACACAAGGGTATTTTGCCGTGGCGGTTG TCAGGAAAGCAAATGGTGGTATCACCTGGAATTCTGTGAGAGGCACGAAGTCCTGCCACA CTGCTGTGGACAGGACAGCAGGCTGGAACATCCCCATGGGCTTGCTGGTCAACCAGACAG GCTCCTGCAAATTTGACGAATTCTTTAGTCAAAGCTGTGCTCCTGGGTCTCAGCCGGGAT CCAATCTCTGTGCACTGTGTGTTGGCAATGACCGGGGCGTGGACAAGTGTGTGCCCAACA GTAATGAGAGATACTATGGTTACACCGGGGCTTTCAGGTGCCTGGCTGAGAATGCTGGGG ATGTGGCGTTTGTGAAAGATGTCACTGTCTTGGACAACACGAATGGACAGAACACAGAAG AGTGGGCCAGGGAATTGAGGTCAGATGACTTTGAGCTGCTGTGCCTTGATGGCACCAGGA AGCCTGTGACTGAGGCTCAGAACTGTCACCTGGCTGTGGCCCCCAGTCATGCTGTGGTCT CTCGGAAGGAAAAGGCAGCACAGGTGGAACAGGTGCTACTCACTGAGCAGGCTCAGTTTG GAAGATACGGAAAAGACTGCCCGGACAAGTTTTGCTTGTTCCGGTCTGAGACCAAAAACC TTCTGTTCAACGACAACACGGAGTGTCTGGCCCAACTCCAAGGCAAAACAACATACGAAA AATATTTGGGATCAGAGTATGTCACAGCCATCGCTAACCTGAAACAGTGCTCAGTCTCCC CGCTTCTGGAAGCCTGTGCCTTCATGATGAGGTAAAACCGGAAAAGAAGCTGCCCCGCCT CCCCAGGGGCCTCAGCTTTCCCTCCTCCCGTCTTGATTCCCAGCTGCCCTGGGCCTGCCT CTCTCCCTTCCTGAGGGCAGACTTTGTTCAGCTCATCCGTTTTCACAATTCCCTGCTGGC CTCTTAGCAAGAAATAAAATTAGAAATTCTGTTGATAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGTGAATGGCAAGGAGAACTCCATCTGGGAGCTTCTCTACCAGTCACAGAAAAAGTTTG GAAAAAGCAATCCACAGGAGTTCCAGCTCTTTGGCTCTCCTGGTCAGCAGAAGGACCTCC TGTTTAGAGACGCTACCATCGGGTTTTTGAAGATCCCCTCAAAGATAGATTCTAAGCTGT ACCTGGGCCTCCCGTACCTTACTGCCATCCAGGGCCTGAGGGAAACGGCAGCGGAGGTGG AGGCGCGGCAGGCGAAGGTCGTGTGGTGCGCCGTGGGTCCAGAGGAGCTGCGCAAGTGCC GGCAGTGGAGCAGCCAGAGCAGCCAGAACCTGAACTGCAGCCTGGCCTCCACCACCGAGG ACTGCATCGTCCAGGTGCTGAAAGGAGAAGCTGATGCTATGAGCTTGGATGGAGGATTTA TCTACACTGCGGGCAAGTGTGGTTTGGTGCCTGTCCTGGCAGAGAACCAAAAATCTCGCC AAAGCAGTAGCTCAGACTGTGTGCATAGACCAACACAAGGGTATTTTGCCGTGGCGGTTG TCAGGAAAGCAAATGGTGGTATCACCTGGAATTCTGTGAGAGGCACGAAGTCCTGCCACA CTGCTGTGGACAGGACAGCAGGCTGGAACATCCCCATGGGCTTGCTGGTCAACCAGACAG GCTCCTGCAAATTTGACGAATTCTTTAGTCAAAGCTGTGCTCCTGGGTCTCAGCCGGGAT CCAATCTCTGTGCACTGTGTGTTGGCAATGACCGGGGCGTGGACAAGTGTGTGCCCAACA GTAATGAGAGATACTATGGTTACACCGGGGCTTTCAGGTGCCTGGCTGAGAATGCTGGGG ATGTGGCGTTTGTGAAAGATGTCACTGTCTTGGACAACACGAATGGACAGAACACAGAAG AGTGGGCCAGGGAATTGAGGTCAGATGACTTTGAGCTGCTGTGCCTTGATGGCACCAGGA AGCCTGTGACTGAGGCTCAGAACTGTCACCTGGCTGTGGCCCCCAGTCATGCTGTGGTCT CTCGGAAGGAAAAGGCAGCACAGGTGGAACAGGTGCTACTCACTGAGCAGGCTCAGTTTG GAAGATACGGAAAAGACTGCCCGGACAAGTTTTGCTTGTTCCGGTCTGAGACCAAAAACC TTCTGTTCAACGACAACACGGAGTGTCTGGCCCAACTCCAAGGCAAAACAACATACGAAA AATATTTGGGATCAGAGTATGTCACAGCCATCGCTAACCTGAAACAGTGCTCAGTCTCCC CGCTTCTGGAAGCCTGTGCCTTCATGATGAGGTAAAACCGGAAAAGAAGCTGCCCCGCCT CCCCAGGGGCCTCAGCTTTCCCTCCTCCCGTCTTGATTCCCAGCTGCCCTGGGCCTGCCT CTCTCCCTTCCTGAGGGCAGACTTTGTTCAGCTCATCCGTTTTCACAATTCCCTGCTGGC CTCTTAGCAAGAAATAAAATTAGAAATTCTGTTGATAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 72 entry(ies) | More info |
| Aligned organism(s): 72 entry(ies) | Help | Less info |
| 220-385, gnl|bosTau2|chr22 (42639446-42639281) | |
| 220-385, gnl|Mm7|chr9 (110723673-110723836) | |
| 516-673, gnl|bosTau2|chr1 (88713478-88713321) | |
| 516-673, gnl|Hg17|chr3 (134911051-134911208) | |
| 516-673, gnl|Mm7|chr9 (102977292-102977135) | |
| 675-820, gnl|bosTau2|chr1 (88643963-88643815) | |
| 675-820, gnl|canFam2|chr23 (33730054-33730216) | |
| 675-820, gnl|dasNov1|scaffold_193918 (3990-4158) | |
| 675-820, gnl|echTel1|scaffold_325115 (36895-36742) | |
| 675-820, gnl|fr1|chrUn (234790798-234790634) | |
| 675-820, gnl|hg17|chr3 (134969563-134969716) | |
| 675-820, gnl|Hg17|chr3 (134969570-134969709) | |
| 675-820, gnl|loxAfr1|scaffold_37469 (15931-16084) | |
| 675-820, gnl|mm7|chr9 (102930056-102929909) | |
| 675-820, gnl|Mm7|chr9 (102930047-102929914) | |
| 675-820, gnl|monDom2|scaffold_24 (26886323-26886488) | |
| 675-820, gnl|oryCun1|scaffold_174606 (50989-51136) | |
| 675-820, gnl|panTro1|chr2 (137132074-137132227) | |
| 675-820, gnl|rheMac2|chr2 (153980379-153980226) | |
| 675-820, gnl|rn3|chr8 (108246776-108246629) | |
| 885-1038, gnl|bosTau2|chr1 (88697160-88697007) | |
| 885-1038, gnl|Hg17|chr3 (46455976-46455823) | |
| 885-1038, gnl|Mm7|chr9 (102968928-102968775) | |
| 1069-1260, gnl|bosTau2|chr22 (42624076-42623885) | |
| 1069-1260, gnl|canFam2|chr20 (45260509-45260286) | |
| 1069-1260, gnl|canFam2|chr20 (45260509-45260286) | |
| 1069-1260, gnl|dasNov1|scaffold_9629 (51930-52150) | |
| 1069-1260, gnl|dasNov1|scaffold_9629 (51930-52156) | |
| 1069-1260, gnl|echTel1|scaffold_176668 (2568-2368) | |
| 1069-1260, gnl|echTel1|scaffold_176668 (2568-2368) | |
| 1069-1260, gnl|fr1|chrUn (234789803-234789996) | |
| 1069-1260, gnl|fr1|chrUn (234789803-234789996) | |
| 1069-1260, gnl|hg17|chr3 (46454419-46454647) | |
| 1069-1260, gnl|Hg17|chr3 (46454626-46454435) | |
| 1069-1260, gnl|hg17|chr3_random (954160-954388) | |
| 1069-1260, gnl|loxAfr1|scaffold_172215 (4330-4558) | |
| 1069-1260, gnl|loxAfr1|scaffold_172215 (4330-4558) | |
| 1069-1260, gnl|mm7|chr9 (110738237-110738004) | |
| 1069-1260, gnl|mm7|chr9 (110738237-110738004) | |
| 1069-1260, gnl|Mm7|chr9 (110738028-110738219) | |
| 1069-1260, gnl|monDom2|scaffold_24 (26893984-26893772) | |
| 1069-1260, gnl|monDom2|scaffold_24 (26893984-26893772) | |
| 1069-1260, gnl|oryCun1|scaffold_99438 (12481-12250) | |
| 1069-1260, gnl|oryCun1|scaffold_99438 (12481-12250) | |
| 1069-1260, gnl|panTro1|chr2 (47804796-47805024) | |
| 1069-1260, gnl|panTro1|chr2 (47804796-47805024) | |
| 1069-1260, gnl|rheMac2|chr2 (90088891-90088663) | |
| 1069-1260, gnl|rheMac2|chr2 (90088891-90088663) | |
| 1069-1260, gnl|rn3|chr8 (115457979-115457747) | |
| 1069-1260, gnl|rn3|chr8 (115457979-115457747) | |
| 1261-1476, gnl|bosTau2|chr22 (42622328-42622114) | |
| 1261-1476, gnl|canFam2|chr20 (45262178-45261896) | |
| 1261-1476, gnl|canFam2|chr20 (45262178-45261896) | |
| 1261-1476, gnl|dasNov1|scaffold_91330 (1460-1198) | |
| 1261-1476, gnl|dasNov1|scaffold_91330 (1460-1198) | |
| 1261-1476, gnl|echTel1|scaffold_88429 (593-310) | |
| 1261-1476, gnl|echTel1|scaffold_88429 (593-310) | |
| 1261-1476, gnl|hg17|chr3 (46452477-46452761) | |
| 1261-1476, gnl|Hg17|chr3 (46452724-46452512) | |
| 1261-1476, gnl|hg17|chr3_random (952217-952501) | |
| 1261-1476, gnl|loxAfr1|scaffold_22245 (27612-27876) | |
| 1261-1476, gnl|loxAfr1|scaffold_22245 (27612-27876) | |
| 1261-1476, gnl|mm7|chr9 (110740053-110739816) | |
| 1261-1476, gnl|mm7|chr9 (110740053-110739816) | |
| 1261-1476, gnl|monDom2|scaffold_24 (26895563-26895235) | |
| 1261-1476, gnl|monDom2|scaffold_24 (26895563-26895235) | |
| 1261-1476, gnl|panTro1|chr2 (47802854-47803138) | |
| 1261-1476, gnl|panTro1|chr2 (47802854-47803138) | |
| 1261-1476, gnl|rheMac2|chr2 (90090867-90090582) | |
| 1261-1476, gnl|rheMac2|chr2 (90090867-90090582) | |
| 1261-1476, gnl|rn3|chr8 (115459663-115459394) | |
| 1261-1476, gnl|rn3|chr8 (115459663-115459394) |
| Aligned organism(s): 72 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 220-385, gnl|bosTau2|chr22 (42639446-42639281) | |
| 220-385, gnl|Mm7|chr9 (110723673-110723836) | |
| 516-673, gnl|bosTau2|chr1 (88713478-88713321) | |
| 516-673, gnl|Hg17|chr3 (134911051-134911208) | |
| 516-673, gnl|Mm7|chr9 (102977292-102977135) | |
| 675-820, gnl|bosTau2|chr1 (88643963-88643815) | |
| 675-820, gnl|canFam2|chr23 (33730054-33730216) | |
| 675-820, gnl|dasNov1|scaffold_193918 (3990-4158) | |
| 675-820, gnl|echTel1|scaffold_325115 (36895-36742) | |
| 675-820, gnl|fr1|chrUn (234790798-234790634) | |
| 675-820, gnl|hg17|chr3 (134969563-134969716) | |
| 675-820, gnl|Hg17|chr3 (134969570-134969709) | |
| 675-820, gnl|loxAfr1|scaffold_37469 (15931-16084) | |
| 675-820, gnl|mm7|chr9 (102930056-102929909) | |
| 675-820, gnl|Mm7|chr9 (102930047-102929914) | |
| 675-820, gnl|monDom2|scaffold_24 (26886323-26886488) | |
| 675-820, gnl|oryCun1|scaffold_174606 (50989-51136) | |
| 675-820, gnl|panTro1|chr2 (137132074-137132227) | |
| 675-820, gnl|rheMac2|chr2 (153980379-153980226) | |
| 675-820, gnl|rn3|chr8 (108246776-108246629) | |
| 885-1038, gnl|bosTau2|chr1 (88697160-88697007) | |
| 885-1038, gnl|Hg17|chr3 (46455976-46455823) | |
| 885-1038, gnl|Mm7|chr9 (102968928-102968775) | |
| 1069-1260, gnl|bosTau2|chr22 (42624076-42623885) | |
| 1069-1260, gnl|canFam2|chr20 (45260509-45260286) | |
| 1069-1260, gnl|canFam2|chr20 (45260509-45260286) | |
| 1069-1260, gnl|dasNov1|scaffold_9629 (51930-52150) | |
| 1069-1260, gnl|dasNov1|scaffold_9629 (51930-52156) | |
| 1069-1260, gnl|echTel1|scaffold_176668 (2568-2368) | |
| 1069-1260, gnl|echTel1|scaffold_176668 (2568-2368) | |
| 1069-1260, gnl|fr1|chrUn (234789803-234789996) | |
| 1069-1260, gnl|fr1|chrUn (234789803-234789996) | |
| 1069-1260, gnl|hg17|chr3 (46454419-46454647) | |
| 1069-1260, gnl|Hg17|chr3 (46454626-46454435) | |
| 1069-1260, gnl|hg17|chr3_random (954160-954388) | |
| 1069-1260, gnl|loxAfr1|scaffold_172215 (4330-4558) | |
| 1069-1260, gnl|loxAfr1|scaffold_172215 (4330-4558) | |
| 1069-1260, gnl|mm7|chr9 (110738237-110738004) | |
| 1069-1260, gnl|mm7|chr9 (110738237-110738004) | |
| 1069-1260, gnl|Mm7|chr9 (110738028-110738219) | |
| 1069-1260, gnl|monDom2|scaffold_24 (26893984-26893772) | |
| 1069-1260, gnl|monDom2|scaffold_24 (26893984-26893772) | |
| 1069-1260, gnl|oryCun1|scaffold_99438 (12481-12250) | |
| 1069-1260, gnl|oryCun1|scaffold_99438 (12481-12250) | |
| 1069-1260, gnl|panTro1|chr2 (47804796-47805024) | |
| 1069-1260, gnl|panTro1|chr2 (47804796-47805024) | |
| 1069-1260, gnl|rheMac2|chr2 (90088891-90088663) | |
| 1069-1260, gnl|rheMac2|chr2 (90088891-90088663) | |
| 1069-1260, gnl|rn3|chr8 (115457979-115457747) | |
| 1069-1260, gnl|rn3|chr8 (115457979-115457747) | |
| 1261-1476, gnl|bosTau2|chr22 (42622328-42622114) | |
| 1261-1476, gnl|canFam2|chr20 (45262178-45261896) | |
| 1261-1476, gnl|canFam2|chr20 (45262178-45261896) | |
| 1261-1476, gnl|dasNov1|scaffold_91330 (1460-1198) | |
| 1261-1476, gnl|dasNov1|scaffold_91330 (1460-1198) | |
| 1261-1476, gnl|echTel1|scaffold_88429 (593-310) | |
| 1261-1476, gnl|echTel1|scaffold_88429 (593-310) | |
| 1261-1476, gnl|hg17|chr3 (46452477-46452761) | |
| 1261-1476, gnl|Hg17|chr3 (46452724-46452512) | |
| 1261-1476, gnl|hg17|chr3_random (952217-952501) | |
| 1261-1476, gnl|loxAfr1|scaffold_22245 (27612-27876) | |
| 1261-1476, gnl|loxAfr1|scaffold_22245 (27612-27876) | |
| 1261-1476, gnl|mm7|chr9 (110740053-110739816) | |
| 1261-1476, gnl|mm7|chr9 (110740053-110739816) | |
| 1261-1476, gnl|monDom2|scaffold_24 (26895563-26895235) | |
| 1261-1476, gnl|monDom2|scaffold_24 (26895563-26895235) | |
| 1261-1476, gnl|panTro1|chr2 (47802854-47803138) | |
| 1261-1476, gnl|panTro1|chr2 (47802854-47803138) | |
| 1261-1476, gnl|rheMac2|chr2 (90090867-90090582) | |
| 1261-1476, gnl|rheMac2|chr2 (90090867-90090582) | |
| 1261-1476, gnl|rn3|chr8 (115459663-115459394) | |
| 1261-1476, gnl|rn3|chr8 (115459663-115459394) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| cga (4.46553) | |
| nbm (1.58919) | |
| mcp (1.02389) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| cly (0.120642) | |
| clu (0.119646) | |
| cbl (0.114797) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cga (4.46553) | |
| nbm (1.58919) | |
| mcp (1.02389) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| cly (0.120642) | |
| clu (0.119646) | |
| cbl (0.114797) |