Ss1.1-Tra1-TCH01E070067.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCATGGCTGAGGTGGGGACCAACCGGGGTTTACTCCCAGAGCACTTCCTCTTCCTGGCCC ATAAGATCTTCAACGACAACAGCCTGAGCATGGAGGCCTTCCAGCACCGTTCTGTGTCCT GGTCACAGTTCAACAAGGAGATCCTGCTAGGTCGTGGCTTCACCTTTTGGCAGTGGTTTG ATGGTGTCCTGGACCTCACCAAACGCTGTCTCCGGAGCTACTGGTCAGATCGGTTGATCA TTGGCTTCATCAGCAAACAGTATGTCACTAGCCTTCTCCTCAATGAACCTGATGGAACCT TCCTCCTTCGCTTCAGTGACTCAGAGATTGGGGGCATCACCATTGCCCACGTTATCAGAG GCCAGGATGGATCCCCACAGATAGAGAACATCCAGCCGTTCTCTGCCAAAGACCTGTCCA TTCGCTCACTGGGGGACCGAATCCGGGACCTTGCTCAGCTCAAAAACCTCTACCCCAAGA AACCCAAGGATGAGGCTTTCCGGAGCCACTACAAACCTGAGCAGATGGGTAAGGATGGCA GGGGATATGTCCCAGCTACGATCAAGATGACTGTGGAAAGGGACCAGCCTCTTCCCACCC CAGAACCCCAAATGCCCACCATGGTGCCCACTTATGATCTTGGAATGGCCCCTGACACCT CCATGAACATGCAGCTCAGCCCAGATATGGTGTCCCAGATGTATCCACCACACTCTCACT CCATCCCCTCATATCCAGCCATCCCCCGGGAAGAATCGGTCAGTGTGTTGTCAGCCTTCC AGGAACCTCACCTGCAGATGCCCCCTAACCTGAGCCAGATGGGCCTGCCCTTTGACCAAC CTCACCCACAGGGCCTACTGCCATGCCAGCCTCAGGAGCATGCTGTGTCCAGCCCTGAGC CCCTGCTCTGCCCAGATGTGACCATGGCAGAAGAGAGTTGCCTGAGCCAGCCAGTGGGAG GGTTCCCTCAAGGCACCTGGGTTGGTGAAGACATGTTCCCACCCTTGCTGCCTCCCACTG AACAGGACCTCACTAAGCTTCTCTTGGAGGGGCAAGGGGAGTCAGGGGGAGGGTCCCTGG GAGCCCAGCCCCTCCTGCAGCCCTCCCTCTATGGGCAGTCTGGGATCTCCATGTCCCATC TGGACCTAAGGGCTAACCCCAGTTGGTGATCCCAGCTGGAAGGGGAACCCAGAGAGACAG CTCTCCTGCCCCCTCGGACCTGCTCTGGACACTTGCCCATGCTCCTGCCAAGCAGCGGAT GGGGCGGGTGTCCTCTTGTCCCCACCTACATCCTGGCCAAGAGCAAAGGACTTTGCCAGG AGAACGCACAGTGGGTGGAACCTCTCAGCTCCTTCCCTCCCACCACACACCCTTGCCCTC CCCCTTCCAGATGCTGGAAGGGTAATTCAGGTTCCAAGTGAGACCAGCCCCAGCATGCCT GTACACGCGGAAAACACACATACGGCCCTCCCTGGAGGATGGGGCTGAGCAGGAAGAGGG CTGGGCAGGAGCACAGATGAGGGCACAGAGGGCTTCTCCACCTGCCTGGAGCCAGGGCTC AGGACTCACACATGTAGAAACATGTGGACATGTGCACACATCTGCACCAGATGCCAGGGG TGGAGGTATAGGCTTGGGTCCCAGCCCCCGGGGAGATGGGGAAGCAGTTCAGGAGACACT GGGTAGGAGGAGGGAGGGTCTGTACATTTGGTTACTGATATGGGTTTTGCCTGGATTAAA AGATGAATCCTGAACAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCATGGCTGAGGTGGGGACCAACCGGGGTTTACTCCCAGAGCACTTCCTCTTCCTGGCCC ATAAGATCTTCAACGACAACAGCCTGAGCATGGAGGCCTTCCAGCACCGTTCTGTGTCCT GGTCACAGTTCAACAAGGAGATCCTGCTAGGTCGTGGCTTCACCTTTTGGCAGTGGTTTG ATGGTGTCCTGGACCTCACCAAACGCTGTCTCCGGAGCTACTGGTCAGATCGGTTGATCA TTGGCTTCATCAGCAAACAGTATGTCACTAGCCTTCTCCTCAATGAACCTGATGGAACCT TCCTCCTTCGCTTCAGTGACTCAGAGATTGGGGGCATCACCATTGCCCACGTTATCAGAG GCCAGGATGGATCCCCACAGATAGAGAACATCCAGCCGTTCTCTGCCAAAGACCTGTCCA TTCGCTCACTGGGGGACCGAATCCGGGACCTTGCTCAGCTCAAAAACCTCTACCCCAAGA AACCCAAGGATGAGGCTTTCCGGAGCCACTACAAACCTGAGCAGATGGGTAAGGATGGCA GGGGATATGTCCCAGCTACGATCAAGATGACTGTGGAAAGGGACCAGCCTCTTCCCACCC CAGAACCCCAAATGCCCACCATGGTGCCCACTTATGATCTTGGAATGGCCCCTGACACCT CCATGAACATGCAGCTCAGCCCAGATATGGTGTCCCAGATGTATCCACCACACTCTCACT CCATCCCCTCATATCCAGCCATCCCCCGGGAAGAATCGGTCAGTGTGTTGTCAGCCTTCC AGGAACCTCACCTGCAGATGCCCCCTAACCTGAGCCAGATGGGCCTGCCCTTTGACCAAC CTCACCCACAGGGCCTACTGCCATGCCAGCCTCAGGAGCATGCTGTGTCCAGCCCTGAGC CCCTGCTCTGCCCAGATGTGACCATGGCAGAAGAGAGTTGCCTGAGCCAGCCAGTGGGAG GGTTCCCTCAAGGCACCTGGGTTGGTGAAGACATGTTCCCACCCTTGCTGCCTCCCACTG AACAGGACCTCACTAAGCTTCTCTTGGAGGGGCAAGGGGAGTCAGGGGGAGGGTCCCTGG GAGCCCAGCCCCTCCTGCAGCCCTCCCTCTATGGGCAGTCTGGGATCTCCATGTCCCATC TGGACCTAAGGGCTAACCCCAGTTGGTGATCCCAGCTGGAAGGGGAACCCAGAGAGACAG CTCTCCTGCCCCCTCGGACCTGCTCTGGACACTTGCCCATGCTCCTGCCAAGCAGCGGAT GGGGCGGGTGTCCTCTTGTCCCCACCTACATCCTGGCCAAGAGCAAAGGACTTTGCCAGG AGAACGCACAGTGGGTGGAACCTCTCAGCTCCTTCCCTCCCACCACACACCCTTGCCCTC CCCCTTCCAGATGCTGGAAGGGTAATTCAGGTTCCAAGTGAGACCAGCCCCAGCATGCCT GTACACGCGGAAAACACACATACGGCCCTCCCTGGAGGATGGGGCTGAGCAGGAAGAGGG CTGGGCAGGAGCACAGATGAGGGCACAGAGGGCTTCTCCACCTGCCTGGAGCCAGGGCTC AGGACTCACACATGTAGAAACATGTGGACATGTGCACACATCTGCACCAGATGCCAGGGG TGGAGGTATAGGCTTGGGTCCCAGCCCCCGGGGAGATGGGGAAGCAGTTCAGGAGACACT GGGTAGGAGGAGGGAGGGTCTGTACATTTGGTTACTGATATGGGTTTTGCCTGGATTAAA AGATGAATCCTGAACAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1018-1461, - strand, RNAz p=0.998632 | |
| 1030-1170, + strand, RNAz p=0.99171 | |
| 1215-1389, - strand, RNAz p=0.998796 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1018-1461, - strand, RNAz p=0.998632 | |
| 1030-1170, + strand, RNAz p=0.99171 | |
| 1215-1389, - strand, RNAz p=0.998796 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_003153, - |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-138, gnl|bosTau2|chr5 (32579707-32579844) | |
| 1-138, gnl|canFam2|chr10 (4221044-4221282) | |
| 1-138, gnl|danRer3|chr23 (33925275-33925061) | |
| 1-138, gnl|dasNov1|scaffold_62738 (4-219) | |
| 1-138, gnl|echTel1|scaffold_234875 (12868-12632) | |
| 1-138, gnl|fr1|chrUn (96837349-96837566) | |
| 1-138, gnl|galGal2|chr27_random (295932-295700) | |
| 1-138, gnl|hg17|chr12 (55782333-55782571) | |
| 1-138, gnl|Hg17|chr12 (55782476-55782339) | |
| 1-138, gnl|loxAfr1|scaffold_76317 (13151-13388) | |
| 1-138, gnl|mm7|chr10 (127156900-127156665) | |
| 1-138, gnl|Mm7|chr10 (127156755-127156892) | |
| 1-138, gnl|monDom2|scaffold_303 (185143-185389) | |
| 1-138, gnl|oryCun1|scaffold_186930 (4815-4577) | |
| 1-138, gnl|panTro1|chr10 (57021811-57022049) | |
| 1-138, gnl|rheMac2|chr11 (54166491-54166729) | |
| 1-138, gnl|rn3|chr7 (67658823-67658584) | |
| 1-138, gnl|tetNig1|chr9 (3385785-3385577) | |
| 1-138, gnl|xenTro1|scaffold_887 (468891-469120) | |
| 369-541, gnl|bosTau2|chr5 (32581679-32581851) | |
| 369-541, gnl|Hg17|chr12 (55779491-55779326) | |
| 369-541, gnl|Mm7|chr10 (127158943-127159102) | |
| 579-693, gnl|bosTau2|chr5 (32582217-32582331) | |
| 579-693, gnl|Hg17|chr12 (55778954-55778840) | |
| 579-693, gnl|Mm7|chr10 (127159743-127159851) | |
| 979-1461, gnl|bosTau2|chr5 (32584141-32584621) | |
| 979-1461, gnl|canFam2|chr10 (4216387-4216971) | |
| 979-1461, gnl|echTel1|scaffold_323122 (5906-5319) | |
| 979-1461, gnl|hg17|chr12 (55776337-55776918) | |
| 979-1461, gnl|Hg17|chr12 (55776812-55776339) | |
| 979-1461, gnl|loxAfr1|scaffold_76317 (8156-8738) | |
| 979-1461, gnl|mm7|chr10 (127161633-127161089) | |
| 979-1461, gnl|Mm7|chr10 (127161182-127161615) | |
| 979-1461, gnl|monDom2|scaffold_303 (177260-178022) | |
| 979-1461, gnl|oryCun1|scaffold_186930 (11769-11197) | |
| 979-1461, gnl|panTro1|chr10 (57015850-57016431) | |
| 979-1461, gnl|rheMac2|chr11 (54160612-54161189) | |
| 979-1461, gnl|rn3|chr7 (67663258-67662706) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-138, gnl|bosTau2|chr5 (32579707-32579844) | |
| 1-138, gnl|canFam2|chr10 (4221044-4221282) | |
| 1-138, gnl|danRer3|chr23 (33925275-33925061) | |
| 1-138, gnl|dasNov1|scaffold_62738 (4-219) | |
| 1-138, gnl|echTel1|scaffold_234875 (12868-12632) | |
| 1-138, gnl|fr1|chrUn (96837349-96837566) | |
| 1-138, gnl|galGal2|chr27_random (295932-295700) | |
| 1-138, gnl|hg17|chr12 (55782333-55782571) | |
| 1-138, gnl|Hg17|chr12 (55782476-55782339) | |
| 1-138, gnl|loxAfr1|scaffold_76317 (13151-13388) | |
| 1-138, gnl|mm7|chr10 (127156900-127156665) | |
| 1-138, gnl|Mm7|chr10 (127156755-127156892) | |
| 1-138, gnl|monDom2|scaffold_303 (185143-185389) | |
| 1-138, gnl|oryCun1|scaffold_186930 (4815-4577) | |
| 1-138, gnl|panTro1|chr10 (57021811-57022049) | |
| 1-138, gnl|rheMac2|chr11 (54166491-54166729) | |
| 1-138, gnl|rn3|chr7 (67658823-67658584) | |
| 1-138, gnl|tetNig1|chr9 (3385785-3385577) | |
| 1-138, gnl|xenTro1|scaffold_887 (468891-469120) | |
| 369-541, gnl|bosTau2|chr5 (32581679-32581851) | |
| 369-541, gnl|Hg17|chr12 (55779491-55779326) | |
| 369-541, gnl|Mm7|chr10 (127158943-127159102) | |
| 579-693, gnl|bosTau2|chr5 (32582217-32582331) | |
| 579-693, gnl|Hg17|chr12 (55778954-55778840) | |
| 579-693, gnl|Mm7|chr10 (127159743-127159851) | |
| 979-1461, gnl|bosTau2|chr5 (32584141-32584621) | |
| 979-1461, gnl|canFam2|chr10 (4216387-4216971) | |
| 979-1461, gnl|echTel1|scaffold_323122 (5906-5319) | |
| 979-1461, gnl|hg17|chr12 (55776337-55776918) | |
| 979-1461, gnl|Hg17|chr12 (55776812-55776339) | |
| 979-1461, gnl|loxAfr1|scaffold_76317 (8156-8738) | |
| 979-1461, gnl|mm7|chr10 (127161633-127161089) | |
| 979-1461, gnl|Mm7|chr10 (127161182-127161615) | |
| 979-1461, gnl|monDom2|scaffold_303 (177260-178022) | |
| 979-1461, gnl|oryCun1|scaffold_186930 (11769-11197) | |
| 979-1461, gnl|panTro1|chr10 (57015850-57016431) | |
| 979-1461, gnl|rheMac2|chr11 (54160612-54161189) | |
| 979-1461, gnl|rn3|chr7 (67663258-67662706) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| nca (0.273748) | |
| ill (0.175593) | |
| cag (0.151194) | |
| pla (0.133672) | |
| cov (0.132153) | |
| cly (0.120642) | |
| eru (0.120048) | |
| clu (0.119646) | |
| jej (0.0989218) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nca (0.273748) | |
| ill (0.175593) | |
| cag (0.151194) | |
| pla (0.133672) | |
| cov (0.132153) | |
| cly (0.120642) | |
| eru (0.120048) | |
| clu (0.119646) | |
| jej (0.0989218) |