Ss1.1-Tra1-TCH01E070096.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGCCAGCAGCCAGATAGGTCAGGCTGCAGGCACGGGCTTCACTGTCAACGTGGCCTGGA ATGGGCCCCGCGTGGGTGACCCCGAGTACCTGGCTGCATGGCATCGGCTGGTGCTTCCTA TTGCCTATGAGTTTAACCCGGAACTGGTGCTGGTCTCAGCTGGTTTCGACGCTGCCCGGG GGGACCCGCTGGGTGGCTGCCAGGTGTCACCTGAGTGCTACGCCCACCTCACCCACCTGC TGATGGGCCTGGCCAATGGCCGTATTATTCTAATCCTAGAGGGTGGCTATAACCTGATAT CCATCTCGGAGTCCATGGCTGCCTGTACCCGCTCCCTCCTTGGGGACTCACCACCCCTGC TGACCCTGCTGAGGCCCCCACTCTCACGGGCCCTGGCCTCGATCGCCGAAACCACCCAAA TCCATCGCAGATACTGGCGCAGCTTGCGGGTCACAAAGGTCGAAGACAAAGAGAGACCCT CCAGTTCTAAGTCGTTCGCCAAGAAGCCATCCCAACCAGCCAAGCCTAAGCCATCCAAGG GGATGACCGCCCCAAAAGGGGACATTCCGGAAGCACACACAGGGAAGGCCACCTCGGTAT CATCAGTGAAAGTGTCCCCCCCAGGCCAGACGAAGTCAGAGGCAGCCCTAGTGGAACTTA CTCAGGACCAGTCCTCAAAGGCTGCCACAGAGGAGGCTGTGGGAGGAGCTAAGCTGATCC AAAGCCCTCCAGCCTCGGGAGGTGACAACCAGACTCCTCCAGCTTCTCCACGGCAAGGAT CCACAACTCTGATCTCCCCCAGCAAGCTGGTAGGCAATCTCGGAGCCTTGGAACTGAGAA ATGAGGTTCAGGAGTCCCCAAAAGAGGAAGGGCTGCTAGGAGAGGCAGCTGGAGGTCAGA ACATGGACAATTTAATGCTGATGCAGGTCTTTGGAAACCAAGCTGACACTGACCAGGCCA TGTTCTATGCTGTGTCACCACTGCTCTGGTGTCCACATGTGGTGGCAGTACGCCCCGTAC CTGAAGCGGGCCTGGACGTGACCCAACCTTGTCAAGACTGTGGAGCACTCCAGGAGAACT GGGTGTGTCTGTCTTGCTATCAGGTCTGCTGCGGCCGTTATATCAACGCCCATATGCTCC AGCACCACGAAAGCTCAGGCCACCCCATGGTCCTCAGCTACGCCGACCTGTCTACCTGGT GTTACCCCTGCCAGGCCTATGTTCACCACGAGGCTCTCCTGGCTGTGAAGAACATCGCCC ACCAGAACAAGTTTGGGGAGGGCGTGCCCCACTCCCGCTAGATCCCAGAAGCCTCTTCGC GGGCCTGCTTTACTCCATCCCAAGTTGTACCTTGGAGGAGAGGCAGCCTCGCTCCCCCCA TCCTGAAGCCCCTTTACCACTCCCCAAGGGTGCCGCCCGAAGTGTAAATACTTTTAAGAG GACAGTGACGATCACTTGTACGTCTTTCCCTGCTCACTGCCAGCTCAAGGGACTCCATCT ACTCTGCCCCCGAAGGAAGGGGCGGCAGCACAGTCACCCCAAGGCGGGGCTGATGTAAAG ATGATACTTTGGAGGGAAGGGGGGATGACTGGCAGGTCTGGCGGGGTGGCATATGCAGTA AAGTACAAGCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGCCAGCAGCCAGATAGGTCAGGCTGCAGGCACGGGCTTCACTGTCAACGTGGCCTGGA ATGGGCCCCGCGTGGGTGACCCCGAGTACCTGGCTGCATGGCATCGGCTGGTGCTTCCTA TTGCCTATGAGTTTAACCCGGAACTGGTGCTGGTCTCAGCTGGTTTCGACGCTGCCCGGG GGGACCCGCTGGGTGGCTGCCAGGTGTCACCTGAGTGCTACGCCCACCTCACCCACCTGC TGATGGGCCTGGCCAATGGCCGTATTATTCTAATCCTAGAGGGTGGCTATAACCTGATAT CCATCTCGGAGTCCATGGCTGCCTGTACCCGCTCCCTCCTTGGGGACTCACCACCCCTGC TGACCCTGCTGAGGCCCCCACTCTCACGGGCCCTGGCCTCGATCGCCGAAACCACCCAAA TCCATCGCAGATACTGGCGCAGCTTGCGGGTCACAAAGGTCGAAGACAAAGAGAGACCCT CCAGTTCTAAGTCGTTCGCCAAGAAGCCATCCCAACCAGCCAAGCCTAAGCCATCCAAGG GGATGACCGCCCCAAAAGGGGACATTCCGGAAGCACACACAGGGAAGGCCACCTCGGTAT CATCAGTGAAAGTGTCCCCCCCAGGCCAGACGAAGTCAGAGGCAGCCCTAGTGGAACTTA CTCAGGACCAGTCCTCAAAGGCTGCCACAGAGGAGGCTGTGGGAGGAGCTAAGCTGATCC AAAGCCCTCCAGCCTCGGGAGGTGACAACCAGACTCCTCCAGCTTCTCCACGGCAAGGAT CCACAACTCTGATCTCCCCCAGCAAGCTGGTAGGCAATCTCGGAGCCTTGGAACTGAGAA ATGAGGTTCAGGAGTCCCCAAAAGAGGAAGGGCTGCTAGGAGAGGCAGCTGGAGGTCAGA ACATGGACAATTTAATGCTGATGCAGGTCTTTGGAAACCAAGCTGACACTGACCAGGCCA TGTTCTATGCTGTGTCACCACTGCTCTGGTGTCCACATGTGGTGGCAGTACGCCCCGTAC CTGAAGCGGGCCTGGACGTGACCCAACCTTGTCAAGACTGTGGAGCACTCCAGGAGAACT GGGTGTGTCTGTCTTGCTATCAGGTCTGCTGCGGCCGTTATATCAACGCCCATATGCTCC AGCACCACGAAAGCTCAGGCCACCCCATGGTCCTCAGCTACGCCGACCTGTCTACCTGGT GTTACCCCTGCCAGGCCTATGTTCACCACGAGGCTCTCCTGGCTGTGAAGAACATCGCCC ACCAGAACAAGTTTGGGGAGGGCGTGCCCCACTCCCGCTAGATCCCAGAAGCCTCTTCGC GGGCCTGCTTTACTCCATCCCAAGTTGTACCTTGGAGGAGAGGCAGCCTCGCTCCCCCCA TCCTGAAGCCCCTTTACCACTCCCCAAGGGTGCCGCCCGAAGTGTAAATACTTTTAAGAG GACAGTGACGATCACTTGTACGTCTTTCCCTGCTCACTGCCAGCTCAAGGGACTCCATCT ACTCTGCCCCCGAAGGAAGGGGCGGCAGCACAGTCACCCCAAGGCGGGGCTGATGTAAAG ATGATACTTTGGAGGGAAGGGGGGATGACTGGCAGGTCTGGCGGGGTGGCATATGCAGTA AAGTACAAGCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 988-1112, + strand, RNAz p=0.956888 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 988-1112, + strand, RNAz p=0.956888 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 130-282, gnl|bosTau2|chrX (26305442-26305290) | |
| 130-282, gnl|canFam2|chrX (41971021-41971234) | |
| 130-282, gnl|danRer3|chrNA (98132713-98132880) | |
| 130-282, gnl|echTel1|scaffold_309373 (63154-63362) | |
| 130-282, gnl|fr1|chrUn (244291139-244290954) | |
| 130-282, gnl|hg17|chrX (48434723-48434939) | |
| 130-282, gnl|Hg17|chrX (48434760-48434912) | |
| 130-282, gnl|loxAfr1|scaffold_32204 (29979-29766) | |
| 130-282, gnl|mm7|chrX (6367504-6367299) | |
| 130-282, gnl|Mm7|chrX (6367473-6367321) | |
| 130-282, gnl|monDom2|scaffold_134 (324106-324334) | |
| 130-282, gnl|oryCun1|scaffold_100109 (5828-5613) | |
| 130-282, gnl|rheMac2|chrX (46685313-46685529) | |
| 130-282, gnl|rn3|chrX (26656435-26656642) | |
| 130-282, gnl|tetNig1|chrUn_random (72708412-72708575) | |
| 130-282, gnl|xenTro1|scaffold_2145 (5669-5489) | |
| 449-699, gnl|bosTau2|chrX (26303573-26303323) | |
| 449-699, gnl|canFam2|chrX (41972691-41972939) | |
| 449-699, gnl|dasNov1|scaffold_132209 (5558-5324) | |
| 449-699, gnl|echTel1|scaffold_249946 (2692-2944) | |
| 449-699, gnl|hg17|chrX (48437507-48437755) | |
| 449-699, gnl|Hg17|chrX (48437563-48438065) | |
| 449-699, gnl|loxAfr1|scaffold_32204 (29313-29063) | |
| 449-699, gnl|mm7|chrX (6365173-6364927) | |
| 449-699, gnl|Mm7|chrX (6365117-6364867) | |
| 449-699, gnl|monDom2|scaffold_134 (324626-324880) | |
| 449-699, gnl|oryCun1|scaffold_180674 (271-26) | |
| 449-699, gnl|panTro1|chrX_random (54780156-54779908) | |
| 449-699, gnl|rheMac2|chrX (46688105-46688353) | |
| 449-699, gnl|rn3|chrX (26658567-26658808) | |
| 953-1112, gnl|bosTau2|chrX (26302824-26302665) | |
| 953-1112, gnl|Hg17|chrX (48438573-48438736) | |
| 953-1112, gnl|Mm7|chrX (6364309-6364150) | |
| 1231-1632, gnl|bosTau2|chrX (26302239-26301860) | |
| 1231-1632, gnl|Hg17|chrX (48439201-48439627) | |
| 1231-1632, gnl|Mm7|chrX (6363689-6363284) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 130-282, gnl|bosTau2|chrX (26305442-26305290) | |
| 130-282, gnl|canFam2|chrX (41971021-41971234) | |
| 130-282, gnl|danRer3|chrNA (98132713-98132880) | |
| 130-282, gnl|echTel1|scaffold_309373 (63154-63362) | |
| 130-282, gnl|fr1|chrUn (244291139-244290954) | |
| 130-282, gnl|hg17|chrX (48434723-48434939) | |
| 130-282, gnl|Hg17|chrX (48434760-48434912) | |
| 130-282, gnl|loxAfr1|scaffold_32204 (29979-29766) | |
| 130-282, gnl|mm7|chrX (6367504-6367299) | |
| 130-282, gnl|Mm7|chrX (6367473-6367321) | |
| 130-282, gnl|monDom2|scaffold_134 (324106-324334) | |
| 130-282, gnl|oryCun1|scaffold_100109 (5828-5613) | |
| 130-282, gnl|rheMac2|chrX (46685313-46685529) | |
| 130-282, gnl|rn3|chrX (26656435-26656642) | |
| 130-282, gnl|tetNig1|chrUn_random (72708412-72708575) | |
| 130-282, gnl|xenTro1|scaffold_2145 (5669-5489) | |
| 449-699, gnl|bosTau2|chrX (26303573-26303323) | |
| 449-699, gnl|canFam2|chrX (41972691-41972939) | |
| 449-699, gnl|dasNov1|scaffold_132209 (5558-5324) | |
| 449-699, gnl|echTel1|scaffold_249946 (2692-2944) | |
| 449-699, gnl|hg17|chrX (48437507-48437755) | |
| 449-699, gnl|Hg17|chrX (48437563-48438065) | |
| 449-699, gnl|loxAfr1|scaffold_32204 (29313-29063) | |
| 449-699, gnl|mm7|chrX (6365173-6364927) | |
| 449-699, gnl|Mm7|chrX (6365117-6364867) | |
| 449-699, gnl|monDom2|scaffold_134 (324626-324880) | |
| 449-699, gnl|oryCun1|scaffold_180674 (271-26) | |
| 449-699, gnl|panTro1|chrX_random (54780156-54779908) | |
| 449-699, gnl|rheMac2|chrX (46688105-46688353) | |
| 449-699, gnl|rn3|chrX (26658567-26658808) | |
| 953-1112, gnl|bosTau2|chrX (26302824-26302665) | |
| 953-1112, gnl|Hg17|chrX (48438573-48438736) | |
| 953-1112, gnl|Mm7|chrX (6364309-6364150) | |
| 1231-1632, gnl|bosTau2|chrX (26302239-26301860) | |
| 1231-1632, gnl|Hg17|chrX (48439201-48439627) | |
| 1231-1632, gnl|Mm7|chrX (6363689-6363284) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| eje (0.296501) | |
| col (0.195008) | |
| cki (0.165235) | |
| jej (0.0989218) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eje (0.296501) | |
| col (0.195008) | |
| cki (0.165235) | |
| jej (0.0989218) |