Ss1.1-Tra1-TCH01E080001.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACTTGAAGCCACCCCCACCCCCACCCCCCGCTTTTCCCGTCACCCTCGTCCCCTGTTTG TGTTCCGAAAAGAAGGAAAAGGGTAGAGCGGACATCTTGTGGCTGTATCGTGCGCGTGAG CCCCGTAGGGCCGGGGAGGCACCAGCTGCCGCGCGGGGAGGAGGCCGAGGCCGCAGCTTG AGGGAGGCCCCGGCCCCTCTGCGCCTGTGTCTGGCAGAACCGGTGTGAGACGAAGAGACA ATCCTTCCCAGCTGCCCGGATAATCAAGAGTTTTGGCCGGACCTTTGAGCACACACCGAG ATAGTGAGGAGCCAGACGAAAAGCACAGACTATGGCGCTGAAACGGATTAATAAGGAACT TAGTGATTTGGCCCGTGACCCTCCAGCACAATGTTCTGCAGGTCCAGTTGGGGATGATAT GTTTCATTGGCAAGCCACAATTATGGGACCTAATGACAGCCCATATCAAGGTGGTGTATT CTTTTTGACAATTCATTTTCCTACAGACTACCCCTTCAAACCACCTAAGGTTGCATTTAC AACAAGAATTTATCATCCAAATATTAACAGTAATGGCAGCATTTGTCTCGATATTCTAAG ATCACAGTGGTCTCCTGCTTTAACTATTTCTAAAGTTCTTTTATCCATTTGTTCACTGCT ATGTGATCCAAACCCAGATGACCCCCTAGTGCCAGAGATTGCACGGATCTATAAAACAGA CAGAGATAAGTACAACAGAATATCTCGGGAATGGACTCAGAAGTATGCCATGTGATGCTA CCTTAAAGTCAGAATAACCTGCATTATAGCTGGAATAAACTTTAAATTACTGTTCCTTTT TTGATTTTCTTATCCGGCTGCTCCCCTATCAGACCTCATCTTTTTTAATTTTATTTTTTG TTTACCTCCCTCCATTCATTCACATGCTCATCTGAGAAGACTTAAGTTCTTCCAGCTTTG GACAATAACTGCTTTTAGAAACTGTAAAGTAGTTACAAGAGAACAGTTGCCCAAGATTCA GAATTTTTTAAAAAATGGAGCATGTGTATTATGTGGCCAATGTCTTCATTCTAACTTGGT TATGAGACTAAAACCATTCCTCACTGCTCTAACATGCTGAAGAATCATCTGAGGGGGAGG GAGATGGATGCTCAGTTGTCACATCAAAGGAAGCAGCATTATTCTAGCAGCATCCATTCT TGTTTAAACCTTCCACTGTTAGAGATTTGAGGTTACATGATATACTTTATGCTCATAACT GATGTGGCTGGAGAATTGGTATTGAATTTATAGCATCAGCAGAACAGAAAATGTGATGTA TTTTATGCATGTCAATAAAGGAATGACCTGTTCTTGTTCTACAGAGAATGGAAATTGGAA GTCAAACACCCTTTGTATTCCAAAATAGGGTCTCAAAACATTTTGTAATTTTCATTTAAA TTGTTAGGAGGCTTGGAGCTATTAGTTAATCTATCTTCCAATACACTGTTTAATATAGCA CTGAATAAATGATGCAAGTTGTCAATGGATGAGTGATCAACTAATAGCTCTGCTAGTAAT TGATTTATTTTTCTTCAATAAAGTTGCATAAACCAATGAGTTAGCTGCCTGGATTAATCA GTATGGGAAACAATCTTTTGTAAATGCAAAGCTGTTTTTTGTATATACTGTTGGGATTTG CCTCATTGTTTGACATCAAATGATGATGTAAAGTTCAAAAGAGTGAATATTTTGCCATGT TCAGTTAAAAGTGCACAGTCTGTTACAGGTTGACACATTGATTGACCTGATTTATGCAGA ATTAATAAGCTATTCAGATAGTGTAGCTTTAGTATGCTGCACAAGATATTGGCAGCCTGG GAGTTCATAGGTGGACTTGGGACCCAGCAGTTTTGAAACATGTATATGGAGTTTAAGAAA TTTATTTTCCAGGTGCAACCCCCATCTAACTAAATTTTTTCTTCACCTTGTACACTTGAC AGTTGAAAAGACCATAATATGGGAGTAATAATGGGTCAAAATTTACAAAATAAAGTACTG TTTTGGTGTGGGAGTTGTCATGAGGCTGTGTTGAAGTGACTTAACTATGTGGGATATTGA GTTTTTTAATGGATTGAGTATCCATTGAAATGGATTTGTTCAGCCATTTACATTAATGAG CATTTAAATGCAACAGATATCATTTCAGGTGACTTAACATGAATGAATAAAAGTCAATGC TATTGGATTGTTTTTTGTTTGACAAGTGCTATCTGTGCCACTTACTAACTTCTGTAGTAA CAAGGGCATTATCATTCTTCAACCCTTTCTAATTCTGACCGTATAGTTTTATTACTGTTT TCTTACTTATTTTGGTTTGTCCTTTGCTTTCTTAAACAGTCCTATAATTCAGTTTCTAGT ACATCTGTGATTTTTCTCCACTTCCACATTTTTGCACTGCTTACACTTATGTGCAATCTT TTTCCTTGTCTGCACACGGATGTGGAAAGCTAGATATAAAATAAATGTTAAAGCTTGATT TTTATAAACATTTTAATATGTAGTTTGGACATGATTTATTGACTTAAGCTGAAAGTGAAA TGCATGCCTTCTGAAGATGTTTTGGCTTTGTTAATTCTGTAATAAGCATTTCATTGAGAA ATATCAATCCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACTTGAAGCCACCCCCACCCCCACCCCCCGCTTTTCCCGTCACCCTCGTCCCCTGTTTG TGTTCCGAAAAGAAGGAAAAGGGTAGAGCGGACATCTTGTGGCTGTATCGTGCGCGTGAG CCCCGTAGGGCCGGGGAGGCACCAGCTGCCGCGCGGGGAGGAGGCCGAGGCCGCAGCTTG AGGGAGGCCCCGGCCCCTCTGCGCCTGTGTCTGGCAGAACCGGTGTGAGACGAAGAGACA ATCCTTCCCAGCTGCCCGGATAATCAAGAGTTTTGGCCGGACCTTTGAGCACACACCGAG ATAGTGAGGAGCCAGACGAAAAGCACAGACTATGGCGCTGAAACGGATTAATAAGGAACT TAGTGATTTGGCCCGTGACCCTCCAGCACAATGTTCTGCAGGTCCAGTTGGGGATGATAT GTTTCATTGGCAAGCCACAATTATGGGACCTAATGACAGCCCATATCAAGGTGGTGTATT CTTTTTGACAATTCATTTTCCTACAGACTACCCCTTCAAACCACCTAAGGTTGCATTTAC AACAAGAATTTATCATCCAAATATTAACAGTAATGGCAGCATTTGTCTCGATATTCTAAG ATCACAGTGGTCTCCTGCTTTAACTATTTCTAAAGTTCTTTTATCCATTTGTTCACTGCT ATGTGATCCAAACCCAGATGACCCCCTAGTGCCAGAGATTGCACGGATCTATAAAACAGA CAGAGATAAGTACAACAGAATATCTCGGGAATGGACTCAGAAGTATGCCATGTGATGCTA CCTTAAAGTCAGAATAACCTGCATTATAGCTGGAATAAACTTTAAATTACTGTTCCTTTT TTGATTTTCTTATCCGGCTGCTCCCCTATCAGACCTCATCTTTTTTAATTTTATTTTTTG TTTACCTCCCTCCATTCATTCACATGCTCATCTGAGAAGACTTAAGTTCTTCCAGCTTTG GACAATAACTGCTTTTAGAAACTGTAAAGTAGTTACAAGAGAACAGTTGCCCAAGATTCA GAATTTTTTAAAAAATGGAGCATGTGTATTATGTGGCCAATGTCTTCATTCTAACTTGGT TATGAGACTAAAACCATTCCTCACTGCTCTAACATGCTGAAGAATCATCTGAGGGGGAGG GAGATGGATGCTCAGTTGTCACATCAAAGGAAGCAGCATTATTCTAGCAGCATCCATTCT TGTTTAAACCTTCCACTGTTAGAGATTTGAGGTTACATGATATACTTTATGCTCATAACT GATGTGGCTGGAGAATTGGTATTGAATTTATAGCATCAGCAGAACAGAAAATGTGATGTA TTTTATGCATGTCAATAAAGGAATGACCTGTTCTTGTTCTACAGAGAATGGAAATTGGAA GTCAAACACCCTTTGTATTCCAAAATAGGGTCTCAAAACATTTTGTAATTTTCATTTAAA TTGTTAGGAGGCTTGGAGCTATTAGTTAATCTATCTTCCAATACACTGTTTAATATAGCA CTGAATAAATGATGCAAGTTGTCAATGGATGAGTGATCAACTAATAGCTCTGCTAGTAAT TGATTTATTTTTCTTCAATAAAGTTGCATAAACCAATGAGTTAGCTGCCTGGATTAATCA GTATGGGAAACAATCTTTTGTAAATGCAAAGCTGTTTTTTGTATATACTGTTGGGATTTG CCTCATTGTTTGACATCAAATGATGATGTAAAGTTCAAAAGAGTGAATATTTTGCCATGT TCAGTTAAAAGTGCACAGTCTGTTACAGGTTGACACATTGATTGACCTGATTTATGCAGA ATTAATAAGCTATTCAGATAGTGTAGCTTTAGTATGCTGCACAAGATATTGGCAGCCTGG GAGTTCATAGGTGGACTTGGGACCCAGCAGTTTTGAAACATGTATATGGAGTTTAAGAAA TTTATTTTCCAGGTGCAACCCCCATCTAACTAAATTTTTTCTTCACCTTGTACACTTGAC AGTTGAAAAGACCATAATATGGGAGTAATAATGGGTCAAAATTTACAAAATAAAGTACTG TTTTGGTGTGGGAGTTGTCATGAGGCTGTGTTGAAGTGACTTAACTATGTGGGATATTGA GTTTTTTAATGGATTGAGTATCCATTGAAATGGATTTGTTCAGCCATTTACATTAATGAG CATTTAAATGCAACAGATATCATTTCAGGTGACTTAACATGAATGAATAAAAGTCAATGC TATTGGATTGTTTTTTGTTTGACAAGTGCTATCTGTGCCACTTACTAACTTCTGTAGTAA CAAGGGCATTATCATTCTTCAACCCTTTCTAATTCTGACCGTATAGTTTTATTACTGTTT TCTTACTTATTTTGGTTTGTCCTTTGCTTTCTTAAACAGTCCTATAATTCAGTTTCTAGT ACATCTGTGATTTTTCTCCACTTCCACATTTTTGCACTGCTTACACTTATGTGCAATCTT TTTCCTTGTCTGCACACGGATGTGGAAAGCTAGATATAAAATAAATGTTAAAGCTTGATT TTTATAAACATTTTAATATGTAGTTTGGACATGATTTATTGACTTAAGCTGAAAGTGAAA TGCATGCCTTCTGAAGATGTTTTGGCTTTGTTAATTCTGTAATAAGCATTTCATTGAGAA ATATCAATCCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 598-2224, - strand, RNAz p=0.919623 | |
| 1220-1336, + strand, RNAz p=0.690336 | |
| 1223-1879, - strand, RNAz p=0.681164 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 598-2224, - strand, RNAz p=0.919623 | |
| 1220-1336, + strand, RNAz p=0.690336 | |
| 1223-1879, - strand, RNAz p=0.681164 |
| ncRNA annotation: 1 entry(ies) | More info |
| ncRNA annotation: 1 entry(ies) | Help | Less info |
| 1307-2048, AL050186 (gnl|hinv|HIV2680), blast E-value=0 |
| ncRNA annotation: 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
| 1307-2048, AL050186 (gnl|hinv|HIV2680), blast E-value=0 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_181892, + |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 201-1601, gnl|bosTau2|chr3 (16369014-16370401) | |
| 201-1601, gnl|Hg17|chr20 (5221593-5220202) | |
| 201-1601, gnl|Mm7|chr3 (135249528-135260408) | |
| 399-847, gnl|bosTau2|chr1 (6895613-6895173) | |
| 399-847, gnl|Hg17|chr3 (37151220-37151659) | |
| 399-847, gnl|Mm7|chr3 (116301451-116301016) | |
| 536-709, gnl|bosTau2|chr19 (7952742-7952571) | |
| 536-709, gnl|Hg17|chr20 (5221265-5221103) | |
| 536-709, gnl|Mm7|chr3 (79072112-79071939) | |
| 1141-1404, gnl|bosTau2|chr1 (80276569-80276833) | |
| 1141-1404, gnl|Hg17|chr4 (104075440-104075186) | |
| 1141-1404, gnl|Mm7|chr3 (135259952-135260205) | |
| 1470-1599, gnl|bosTau2|chr10 (32261885-32262009) | |
| 1470-1599, gnl|canFam2|chr30 (29420900-29420984) | |
| 1470-1599, gnl|dasNov1|scaffold_33686 (3142-3228) | |
| 1470-1599, gnl|echTel1|scaffold_325472 (86472-86559) | |
| 1470-1599, gnl|galGal2|chr4 (61419544-61419458) | |
| 1470-1599, gnl|hg17|chr15 (59755690-59755781) | |
| 1470-1599, gnl|Hg17|chr15 (59755690-59755824) | |
| 1470-1599, gnl|loxAfr1|scaffold_199 (192190-192273) | |
| 1470-1599, gnl|mm7|chr9 (68221016-68220932) | |
| 1470-1599, gnl|Mm7|chrX (69880158-69880020) | |
| 1470-1599, gnl|monDom2|scaffold_4 (86385882-86385796) | |
| 1470-1599, gnl|oryCun1|scaffold_208596 (62378-62464) | |
| 1470-1599, gnl|panTro1|chr16 (60201955-60202046) | |
| 1470-1599, gnl|rheMac2|chr5 (95777965-95777879) | |
| 1470-1599, gnl|rn3|chr8 (72591487-72591406) | |
| 1470-1599, gnl|xenTro1|scaffold_326 (398476-398558) | |
| 1723-1914, gnl|bosTau2|chr20 (23881754-23881564) | |
| 1723-1914, gnl|Hg17|chr4 (104074859-104074667) | |
| 1723-1914, gnl|Mm7|chr3 (135260530-135260720) | |
| 2071-2245, gnl|bosTau2|chr5 (68488011-68487836) | |
| 2071-2245, gnl|Hg17|chr4 (104074511-104074354) | |
| 2071-2245, gnl|Mm7|chr3 (135260887-135261031) | |
| 2121-2236, gnl|bosTau2|chr20 (23880267-23880155) | |
| 2121-2236, gnl|Mm7|chr3 (135260918-135261030) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 201-1601, gnl|bosTau2|chr3 (16369014-16370401) | |
| 201-1601, gnl|Hg17|chr20 (5221593-5220202) | |
| 201-1601, gnl|Mm7|chr3 (135249528-135260408) | |
| 399-847, gnl|bosTau2|chr1 (6895613-6895173) | |
| 399-847, gnl|Hg17|chr3 (37151220-37151659) | |
| 399-847, gnl|Mm7|chr3 (116301451-116301016) | |
| 536-709, gnl|bosTau2|chr19 (7952742-7952571) | |
| 536-709, gnl|Hg17|chr20 (5221265-5221103) | |
| 536-709, gnl|Mm7|chr3 (79072112-79071939) | |
| 1141-1404, gnl|bosTau2|chr1 (80276569-80276833) | |
| 1141-1404, gnl|Hg17|chr4 (104075440-104075186) | |
| 1141-1404, gnl|Mm7|chr3 (135259952-135260205) | |
| 1470-1599, gnl|bosTau2|chr10 (32261885-32262009) | |
| 1470-1599, gnl|canFam2|chr30 (29420900-29420984) | |
| 1470-1599, gnl|dasNov1|scaffold_33686 (3142-3228) | |
| 1470-1599, gnl|echTel1|scaffold_325472 (86472-86559) | |
| 1470-1599, gnl|galGal2|chr4 (61419544-61419458) | |
| 1470-1599, gnl|hg17|chr15 (59755690-59755781) | |
| 1470-1599, gnl|Hg17|chr15 (59755690-59755824) | |
| 1470-1599, gnl|loxAfr1|scaffold_199 (192190-192273) | |
| 1470-1599, gnl|mm7|chr9 (68221016-68220932) | |
| 1470-1599, gnl|Mm7|chrX (69880158-69880020) | |
| 1470-1599, gnl|monDom2|scaffold_4 (86385882-86385796) | |
| 1470-1599, gnl|oryCun1|scaffold_208596 (62378-62464) | |
| 1470-1599, gnl|panTro1|chr16 (60201955-60202046) | |
| 1470-1599, gnl|rheMac2|chr5 (95777965-95777879) | |
| 1470-1599, gnl|rn3|chr8 (72591487-72591406) | |
| 1470-1599, gnl|xenTro1|scaffold_326 (398476-398558) | |
| 1723-1914, gnl|bosTau2|chr20 (23881754-23881564) | |
| 1723-1914, gnl|Hg17|chr4 (104074859-104074667) | |
| 1723-1914, gnl|Mm7|chr3 (135260530-135260720) | |
| 2071-2245, gnl|bosTau2|chr5 (68488011-68487836) | |
| 2071-2245, gnl|Hg17|chr4 (104074511-104074354) | |
| 2071-2245, gnl|Mm7|chr3 (135260887-135261031) | |
| 2121-2236, gnl|bosTau2|chr20 (23880267-23880155) | |
| 2121-2236, gnl|Mm7|chr3 (135260918-135261030) |
| Expressed library(ies): 70 entry(ies) | More info |
| Expressed library(ies): 70 entry(ies) | Help | Less info |
| liv (1.31656) | |
| cbl (1.14797) | |
| spl (1.14548) | |
| isp (1.05263) | |
| rec (1.03842) | |
| ret (1.02987) | |
| thg (1.01433) | |
| sme (0.91631) | |
| sag (0.913576) | |
| sin (0.874738) | |
| ova (0.774793) | |
| lin (0.728014) | |
| lnt (0.711541) | |
| mgp (0.692042) | |
| vin (0.665115) | |
| sug (0.636456) | |
| fco (0.628832) | |
| tbr (0.616713) | |
| hea (0.613497) | |
| cte (0.58548) | |
| ste (0.540833) | |
| cty (0.5204) | |
| bla (0.497389) | |
| ldo (0.485013) | |
| clu (0.478583) | |
| bfe (0.449573) | |
| hlv (0.417769) | |
| tes (0.415628) | |
| nca (0.410621) | |
| eje (0.395335) | |
| aor (0.390549) | |
| tra (0.369276) | |
| pgl (0.35545) | |
| gul (0.355177) | |
| fty (0.351679) | |
| med (0.348756) | |
| mcp (0.341297) | |
| eye (0.341006) | |
| nco (0.323468) | |
| csp (0.322373) | |
| fce (0.271592) | |
| ssp (0.271039) | |
| kid (0.259471) | |
| eru (0.240096) | |
| cbe (0.239234) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| jca (0.22792) | |
| nlu (0.191681) | |
| mgm (0.180343) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| mga (0.160205) | |
| cli (0.152812) | |
| eli (0.151814) | |
| lun (0.150489) | |
| fat (0.147427) | |
| ski (0.146735) | |
| pty (0.142714) | |
| csk (0.140746) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| spc (0.113366) | |
| jej (0.0989218) |
| Expressed library(ies): 70 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| liv (1.31656) | |
| cbl (1.14797) | |
| spl (1.14548) | |
| isp (1.05263) | |
| rec (1.03842) | |
| ret (1.02987) | |
| thg (1.01433) | |
| sme (0.91631) | |
| sag (0.913576) | |
| sin (0.874738) | |
| ova (0.774793) | |
| lin (0.728014) | |
| lnt (0.711541) | |
| mgp (0.692042) | |
| vin (0.665115) | |
| sug (0.636456) | |
| fco (0.628832) | |
| tbr (0.616713) | |
| hea (0.613497) | |
| cte (0.58548) | |
| ste (0.540833) | |
| cty (0.5204) | |
| bla (0.497389) | |
| ldo (0.485013) | |
| clu (0.478583) | |
| bfe (0.449573) | |
| hlv (0.417769) | |
| tes (0.415628) | |
| nca (0.410621) | |
| eje (0.395335) | |
| aor (0.390549) | |
| tra (0.369276) | |
| pgl (0.35545) | |
| gul (0.355177) | |
| fty (0.351679) | |
| med (0.348756) | |
| mcp (0.341297) | |
| eye (0.341006) | |
| nco (0.323468) | |
| csp (0.322373) | |
| fce (0.271592) | |
| ssp (0.271039) | |
| kid (0.259471) | |
| eru (0.240096) | |
| cbe (0.239234) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| jca (0.22792) | |
| nlu (0.191681) | |
| mgm (0.180343) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| mga (0.160205) | |
| cli (0.152812) | |
| eli (0.151814) | |
| lun (0.150489) | |
| fat (0.147427) | |
| ski (0.146735) | |
| pty (0.142714) | |
| csk (0.140746) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| spc (0.113366) | |
| jej (0.0989218) |