Ss1.1-Tra1-TCH01E080059.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGGGCCCCCAAAGTACTGCTTCTCTCCGGGAAGCCCGCCGCCGCCGCCGCCGCTGGAGC TCCGGCCGGCCGGGCTCTGCCTATCATGGTGCCGGGCCAGCGAGGGGCCAGCCCGGAGGC GGCAAGCGGGGGGCCGCCCCAGACGCGCAAGAGACAGCGCCTCACGCACCTGAGCCCCGA AGAGAAGGCGTTACGGAGGAAACTGAAAAACAGAGTAGCAGCTCAGACTGCCAGAGACCG AAAGAAAGCTCGAATGAGTGAGCTGGAGCAACAAGTGGTAGATTTGGAAGAAGAGAACCA AAAGCTTTTGCTAGAAAATCAGCTTTTACGAGAGAAAACACATGGCCTTGTAGTTGAGAA CCAGGAGTTAAGACAGCGCTTGGGGATGGATGCCTTAGTTACTGAAGAGGAGGCAGAGAC CAAGGGGAATGGAGCGGGGCCGGTGGCCGGGTCTGCTGAGTCCGCAGCACTCAGACTACG TGCACCTCTGCAGCAGGTGCAGGCCCAGTTGTCACCCCTCCAGAACATCTCCCCATGGAT TCTGACGGTGTTGACTCTTCAGACTCTGAGTCTGATATCCTCTTGGGCATTCTGTTCAAC TTGGACCCAGTCATGTTCTTCAGATGTCCTTCCCCAGACTCTGCCAGCCTGGAGCAGCTC CCAGAAGTCGACCCAGAAGGACCCAGTTCCTTACCAGCCTCCCCTTCTTCATCACTGGGG ACGTCACCAGCCAAGCTGGAAGCCATTAATGAAGTGATTCGTTTTGACCACGTATATACA AAGCCCCTAGTCTTAGAGATTCCCTCTGAGACAGAGAGCCAAGCTAATGTGGTAGTGAAA ATTGAGGAAGCACCTTCCAGCCCCTCAGAGAAAGATCGCCCTGAATTCACTGTCTCAGTG AAGGAAGAACTTACAGAAGATGACTTCATTCCAGAGCTGGGTATCTCAGATCTGCTTTCA ACCAGCCACTGCCTAAAGCCATCTTCCTGCCTACTGGATGCTTATAGTGACTGTAGTTAT GAGGGTTCCCCTTCTCCCCTAAGTGACATGTCCTCTCTGCTTGGTGTAGACCATTCGTGG GAGGACACTTTTGCCAGTGAACTCTTTCCCCAGCTGATTAGTGTCTAAGGAGTGATCAGT ACTGTTAACCCTTTTTCTTGACTATTACACTGCCTGGAGGATAGCACAGAAGCCTGTGGT TCATTCAGAAAGCTAGAGTAGAGGGTGTACAGTCCTAGAGTATTCCTCTAATATATTTGT TCAAACCTCATAGGTCACCCCAGGTATTGTCTTTTGACATTCAGTGGTCTAGGACATGCA GGTTGTTACTATAATCCAGAATTATGGCTTCTGAGGTACCTTTATCTTAAGGGCAGTGGT TTGCCCTAAAATACTTGGGTAAGGGTCACTGGACAAGAGTCCTAGACATGGAATTAATGA ATGGCCCTTTATCATTTCTCTTCACCCCTTCTTGGCATCCCAGGCTTGCCTCCGATTTTA GGTCCTTTAGTTTGCTTCTGCAGGCAGAGAGAATGCCTACCTGAGGGGGCTCCTTTTCCT TCATGTACAGTTCAAGTAAAGATCAAGAATCTTTTGTGAAATTATTGAAATTTACTATGT AAATGCTTCACAGAATCTTTCCCAGCTAGTGTAACTTTTGGAAGGTGCTTTCTCCATTTA TTTAAAACTACCTGTGCAATTAAAAAGTACAGTGCAAAAAAAAAAAAAATTCCTTCTTGA AACTCAAGTCAAGGTGTTTCACTGTTGATACTGATTTATCCAACTTGAGTGAGCATGCCA CGTTTTTTTTTTTTGTTGTTTTGTTTTTTTTTTGGCCGTGCTTGCCGCATGCAGAAATTG CTGGTCAGGGATCAAACTCAAGCCACAGCAGCGACCACGCTGGATCCTTAACCCACTGTG CCACAAAACCCCAGCACGCCACTTTTCAAAGTGACTGAAAACTTTTCTGCCTTAATTGCT GTCTGCTTCAATTCCTGGCTCTAATAAGTAATACACCTGGAGCAGTTACTATATTTGTAA GACAGCTTTAGCCTGACTTTTGTAGCTTGTAATGGTAGAGCTAGAACTTGTAACAAGTGT TTTGCTGTATCTTATGTTAGAGAAGGACATGCTATTAAATAGTAATATTCTCTTGCTGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGGGCCCCCAAAGTACTGCTTCTCTCCGGGAAGCCCGCCGCCGCCGCCGCCGCTGGAGC TCCGGCCGGCCGGGCTCTGCCTATCATGGTGCCGGGCCAGCGAGGGGCCAGCCCGGAGGC GGCAAGCGGGGGGCCGCCCCAGACGCGCAAGAGACAGCGCCTCACGCACCTGAGCCCCGA AGAGAAGGCGTTACGGAGGAAACTGAAAAACAGAGTAGCAGCTCAGACTGCCAGAGACCG AAAGAAAGCTCGAATGAGTGAGCTGGAGCAACAAGTGGTAGATTTGGAAGAAGAGAACCA AAAGCTTTTGCTAGAAAATCAGCTTTTACGAGAGAAAACACATGGCCTTGTAGTTGAGAA CCAGGAGTTAAGACAGCGCTTGGGGATGGATGCCTTAGTTACTGAAGAGGAGGCAGAGAC CAAGGGGAATGGAGCGGGGCCGGTGGCCGGGTCTGCTGAGTCCGCAGCACTCAGACTACG TGCACCTCTGCAGCAGGTGCAGGCCCAGTTGTCACCCCTCCAGAACATCTCCCCATGGAT TCTGACGGTGTTGACTCTTCAGACTCTGAGTCTGATATCCTCTTGGGCATTCTGTTCAAC TTGGACCCAGTCATGTTCTTCAGATGTCCTTCCCCAGACTCTGCCAGCCTGGAGCAGCTC CCAGAAGTCGACCCAGAAGGACCCAGTTCCTTACCAGCCTCCCCTTCTTCATCACTGGGG ACGTCACCAGCCAAGCTGGAAGCCATTAATGAAGTGATTCGTTTTGACCACGTATATACA AAGCCCCTAGTCTTAGAGATTCCCTCTGAGACAGAGAGCCAAGCTAATGTGGTAGTGAAA ATTGAGGAAGCACCTTCCAGCCCCTCAGAGAAAGATCGCCCTGAATTCACTGTCTCAGTG AAGGAAGAACTTACAGAAGATGACTTCATTCCAGAGCTGGGTATCTCAGATCTGCTTTCA ACCAGCCACTGCCTAAAGCCATCTTCCTGCCTACTGGATGCTTATAGTGACTGTAGTTAT GAGGGTTCCCCTTCTCCCCTAAGTGACATGTCCTCTCTGCTTGGTGTAGACCATTCGTGG GAGGACACTTTTGCCAGTGAACTCTTTCCCCAGCTGATTAGTGTCTAAGGAGTGATCAGT ACTGTTAACCCTTTTTCTTGACTATTACACTGCCTGGAGGATAGCACAGAAGCCTGTGGT TCATTCAGAAAGCTAGAGTAGAGGGTGTACAGTCCTAGAGTATTCCTCTAATATATTTGT TCAAACCTCATAGGTCACCCCAGGTATTGTCTTTTGACATTCAGTGGTCTAGGACATGCA GGTTGTTACTATAATCCAGAATTATGGCTTCTGAGGTACCTTTATCTTAAGGGCAGTGGT TTGCCCTAAAATACTTGGGTAAGGGTCACTGGACAAGAGTCCTAGACATGGAATTAATGA ATGGCCCTTTATCATTTCTCTTCACCCCTTCTTGGCATCCCAGGCTTGCCTCCGATTTTA GGTCCTTTAGTTTGCTTCTGCAGGCAGAGAGAATGCCTACCTGAGGGGGCTCCTTTTCCT TCATGTACAGTTCAAGTAAAGATCAAGAATCTTTTGTGAAATTATTGAAATTTACTATGT AAATGCTTCACAGAATCTTTCCCAGCTAGTGTAACTTTTGGAAGGTGCTTTCTCCATTTA TTTAAAACTACCTGTGCAATTAAAAAGTACAGTGCAAAAAAAAAAAAAATTCCTTCTTGA AACTCAAGTCAAGGTGTTTCACTGTTGATACTGATTTATCCAACTTGAGTGAGCATGCCA CGTTTTTTTTTTTTGTTGTTTTGTTTTTTTTTTGGCCGTGCTTGCCGCATGCAGAAATTG CTGGTCAGGGATCAAACTCAAGCCACAGCAGCGACCACGCTGGATCCTTAACCCACTGTG CCACAAAACCCCAGCACGCCACTTTTCAAAGTGACTGAAAACTTTTCTGCCTTAATTGCT GTCTGCTTCAATTCCTGGCTCTAATAAGTAATACACCTGGAGCAGTTACTATATTTGTAA GACAGCTTTAGCCTGACTTTTGTAGCTTGTAATGGTAGAGCTAGAACTTGTAACAAGTGT TTTGCTGTATCTTATGTTAGAGAAGGACATGCTATTAAATAGTAATATTCTCTTGCTGTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 569-687, - strand, RNAz p=0.83467 | |
| 768-887, - strand, RNAz p=0.671681 | |
| 1008-1127, + strand, RNAz p=0.615335 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 569-687, - strand, RNAz p=0.83467 | |
| 768-887, - strand, RNAz p=0.671681 | |
| 1008-1127, + strand, RNAz p=0.615335 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AB076384, + |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 1-199, gnl|bosTau2|chr17 (41359403-41359211) | |
| 1-199, gnl|canFam2|chr26 (25198370-25198217) | |
| 1-199, gnl|dasNov1|scaffold_87361 (656-790) | |
| 1-199, gnl|galGal2|chr15 (7670635-7670482) | |
| 1-199, gnl|Hg17|chr22 (27521031-27520839) | |
| 1-199, gnl|hg17|chr5 (112248673-112248814) | |
| 1-199, gnl|loxAfr1|scaffold_13234 (42476-42337) | |
| 1-199, gnl|mm7|chr11 (5473028-5473164) | |
| 1-199, gnl|Mm7|chr11 (5473033-5473204) | |
| 1-199, gnl|oryCun1|scaffold_135549 (10455-10309) | |
| 1-199, gnl|panTro1|chr4 (118376385-118376526) | |
| 1-199, gnl|rheMac2|chr6 (109209045-109209188) | |
| 1-199, gnl|rn3|chr14 (86171099-86171226) | |
| 294-428, gnl|bosTau2|chr17 (41357284-41357150) | |
| 294-428, gnl|canFam2|chr26 (25195975-25196129) | |
| 294-428, gnl|canFam2|chr26 (25196129-25195988) | |
| 294-428, gnl|danRer3|chrNA (138131840-138131719) | |
| 294-428, gnl|dasNov1|scaffold_157531 (4977-4828) | |
| 294-428, gnl|dasNov1|scaffold_157531 (4828-4934) | |
| 294-428, gnl|echTel1|scaffold_158322 (3866-4014) | |
| 294-428, gnl|echTel1|scaffold_158322 (4013-3873) | |
| 294-428, gnl|galGal2|chr15 (7670139-7670276) | |
| 294-428, gnl|galGal2|chr15 (7670276-7670157) | |
| 294-428, gnl|hg17|chr22 (27517603-27517751) | |
| 294-428, gnl|Hg17|chr22 (27517749-27517615) | |
| 294-428, gnl|hg17|chr5 (112248928-112249069) | |
| 294-428, gnl|loxAfr1|scaffold_39210 (9280-9132) | |
| 294-428, gnl|loxAfr1|scaffold_39210 (9132-9273) | |
| 294-428, gnl|mm7|chr11 (5475478-5475334) | |
| 294-428, gnl|mm7|chr11 (5475334-5475475) | |
| 294-428, gnl|Mm7|chr11 (5475334-5475474) | |
| 294-428, gnl|monDom2|scaffold_89 (2610398-2610546) | |
| 294-428, gnl|monDom2|scaffold_89 (2610545-2610402) | |
| 294-428, gnl|oryCun1|scaffold_138723 (8920-8769) | |
| 294-428, gnl|oryCun1|scaffold_138723 (8769-8909) | |
| 294-428, gnl|panTro1|chr23 (27618965-27619113) | |
| 294-428, gnl|panTro1|chr4 (118376640-118376781) | |
| 294-428, gnl|rheMac2|chr10 (72627733-72627881) | |
| 294-428, gnl|rheMac2|chr6 (109209308-109209449) | |
| 294-428, gnl|rn3|chr14 (86173714-86173560) | |
| 294-428, gnl|rn3|chr14 (86173560-86173704) | |
| 294-428, gnl|xenTro1|scaffold_2 (1573230-1573075) | |
| 294-428, gnl|xenTro1|scaffold_2 (1571095-1571204) | |
| 569-1716, gnl|bosTau2|chr17 (41355624-41354483) | |
| 569-1716, gnl|Hg17|chr22 (27516276-27515102) | |
| 569-1716, gnl|Mm7|chr11 (5476686-5477894) | |
| 1938-2160, gnl|bosTau2|chr17 (41354385-41354155) | |
| 1938-2160, gnl|Hg17|chr22 (27515006-27514754) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-199, gnl|bosTau2|chr17 (41359403-41359211) | |
| 1-199, gnl|canFam2|chr26 (25198370-25198217) | |
| 1-199, gnl|dasNov1|scaffold_87361 (656-790) | |
| 1-199, gnl|galGal2|chr15 (7670635-7670482) | |
| 1-199, gnl|Hg17|chr22 (27521031-27520839) | |
| 1-199, gnl|hg17|chr5 (112248673-112248814) | |
| 1-199, gnl|loxAfr1|scaffold_13234 (42476-42337) | |
| 1-199, gnl|mm7|chr11 (5473028-5473164) | |
| 1-199, gnl|Mm7|chr11 (5473033-5473204) | |
| 1-199, gnl|oryCun1|scaffold_135549 (10455-10309) | |
| 1-199, gnl|panTro1|chr4 (118376385-118376526) | |
| 1-199, gnl|rheMac2|chr6 (109209045-109209188) | |
| 1-199, gnl|rn3|chr14 (86171099-86171226) | |
| 294-428, gnl|bosTau2|chr17 (41357284-41357150) | |
| 294-428, gnl|canFam2|chr26 (25195975-25196129) | |
| 294-428, gnl|canFam2|chr26 (25196129-25195988) | |
| 294-428, gnl|danRer3|chrNA (138131840-138131719) | |
| 294-428, gnl|dasNov1|scaffold_157531 (4977-4828) | |
| 294-428, gnl|dasNov1|scaffold_157531 (4828-4934) | |
| 294-428, gnl|echTel1|scaffold_158322 (3866-4014) | |
| 294-428, gnl|echTel1|scaffold_158322 (4013-3873) | |
| 294-428, gnl|galGal2|chr15 (7670139-7670276) | |
| 294-428, gnl|galGal2|chr15 (7670276-7670157) | |
| 294-428, gnl|hg17|chr22 (27517603-27517751) | |
| 294-428, gnl|Hg17|chr22 (27517749-27517615) | |
| 294-428, gnl|hg17|chr5 (112248928-112249069) | |
| 294-428, gnl|loxAfr1|scaffold_39210 (9280-9132) | |
| 294-428, gnl|loxAfr1|scaffold_39210 (9132-9273) | |
| 294-428, gnl|mm7|chr11 (5475478-5475334) | |
| 294-428, gnl|mm7|chr11 (5475334-5475475) | |
| 294-428, gnl|Mm7|chr11 (5475334-5475474) | |
| 294-428, gnl|monDom2|scaffold_89 (2610398-2610546) | |
| 294-428, gnl|monDom2|scaffold_89 (2610545-2610402) | |
| 294-428, gnl|oryCun1|scaffold_138723 (8920-8769) | |
| 294-428, gnl|oryCun1|scaffold_138723 (8769-8909) | |
| 294-428, gnl|panTro1|chr23 (27618965-27619113) | |
| 294-428, gnl|panTro1|chr4 (118376640-118376781) | |
| 294-428, gnl|rheMac2|chr10 (72627733-72627881) | |
| 294-428, gnl|rheMac2|chr6 (109209308-109209449) | |
| 294-428, gnl|rn3|chr14 (86173714-86173560) | |
| 294-428, gnl|rn3|chr14 (86173560-86173704) | |
| 294-428, gnl|xenTro1|scaffold_2 (1573230-1573075) | |
| 294-428, gnl|xenTro1|scaffold_2 (1571095-1571204) | |
| 569-1716, gnl|bosTau2|chr17 (41355624-41354483) | |
| 569-1716, gnl|Hg17|chr22 (27516276-27515102) | |
| 569-1716, gnl|Mm7|chr11 (5476686-5477894) | |
| 1938-2160, gnl|bosTau2|chr17 (41354385-41354155) | |
| 1938-2160, gnl|Hg17|chr22 (27515006-27514754) |
| Expressed library(ies): 45 entry(ies) | More info |
| Expressed library(ies): 45 entry(ies) | Help | Less info |
| nco (0.646935) | |
| pty (0.570858) | |
| cty (0.5204) | |
| pro (0.512033) | |
| cly (0.482567) | |
| clu (0.478583) | |
| csk (0.422238) | |
| nmm (0.398406) | |
| cov (0.396458) | |
| mcp (0.341297) | |
| nje (0.33184) | |
| lnt (0.284616) | |
| cga (0.279096) | |
| lyg (0.266205) | |
| tra (0.246184) | |
| eep (0.245128) | |
| tes (0.207814) | |
| eje (0.197668) | |
| col (0.195008) | |
| cmu (0.186393) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| sin (0.174948) | |
| eye (0.170503) | |
| cut (0.169924) | |
| cki (0.165235) | |
| cje (0.165235) | |
| csp (0.161186) | |
| mga (0.160205) | |
| fco (0.157208) | |
| cli (0.152812) | |
| cag (0.151194) | |
| lun (0.150489) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| ste (0.135208) | |
| ute (0.132784) | |
| sug (0.127291) | |
| ese (0.126502) | |
| eru (0.120048) | |
| med (0.116252) | |
| jca (0.11396) | |
| spc (0.113366) | |
| nbm (0.0993246) |
| Expressed library(ies): 45 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.646935) | |
| pty (0.570858) | |
| cty (0.5204) | |
| pro (0.512033) | |
| cly (0.482567) | |
| clu (0.478583) | |
| csk (0.422238) | |
| nmm (0.398406) | |
| cov (0.396458) | |
| mcp (0.341297) | |
| nje (0.33184) | |
| lnt (0.284616) | |
| cga (0.279096) | |
| lyg (0.266205) | |
| tra (0.246184) | |
| eep (0.245128) | |
| tes (0.207814) | |
| eje (0.197668) | |
| col (0.195008) | |
| cmu (0.186393) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| sin (0.174948) | |
| eye (0.170503) | |
| cut (0.169924) | |
| cki (0.165235) | |
| cje (0.165235) | |
| csp (0.161186) | |
| mga (0.160205) | |
| fco (0.157208) | |
| cli (0.152812) | |
| cag (0.151194) | |
| lun (0.150489) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| ste (0.135208) | |
| ute (0.132784) | |
| sug (0.127291) | |
| ese (0.126502) | |
| eru (0.120048) | |
| med (0.116252) | |
| jca (0.11396) | |
| spc (0.113366) | |
| nbm (0.0993246) |