Ss1.1-Tra1-TCH01E080069.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGACTGGTTTAAATTACCCACCAGGAAATATGTGGCTGTAGGAGTATGCTTAATTCATG CTCATTGAAAGTGAGCCAGGGCTGTTTTCTCCCCCTCCCTCCTTGCCTCCCGGTTCATAT AACCCCCGCTGCCTCCAGCCTGCCTTTGCCCACTTGACTTGCTGGCCCTGAGCACGGAGA GGTGCAGGGAGAATCTGAGAATGGGCACGTTCTTCTCTGAGACAGGGTGGCTCTGCCTGA CTGTCACGGCAGTGCTGGGAGCAGTAATTCTTTGCAAACTCAAGAAGAACCACAGGCAGG AGGGCAGAAAGATGGTCTGCCTGGCTGGCCTCTGGGGAGGGGCTTGCCTGCTCAGCCTCT CTCTCTTCTGGGGCTTGATCCTCTTCTCCCTGTCATGTTTTCTCATGTATGCTTACTTTT CTGGCCAAGAGTTTTTACCTGTGGATCAAAAGGCGGTGCTGATCACAGGTGGCGATTCTG GGATTGGCCATGCTTTGTCCAAGTATCTGGATAAGCTGGGATTCACAGTATTTGCTGGAG TTCTGGATGAAAAGGGATCAGGAGCAGAGGAACTACGAAGAACCTGCTCCAAGCACCTGT CTGTGCTCCAGCTGGACATCACCAACTCGCAGCAGATAAGAGATGCTCACAGCAAAGTGA TGGAAAAGGTGCAGAACAGAGGACTGTGGGCTGTGGTCAACAACGCAGGGATCCTTGGCT TCCCAATCGATGGGGAGCTCATTCCCATGACCCAATACAAACGATGCATGGCCGTGAACT TCTTCGGGGCCGTGGAAGTCACCAAGGCATTTTTGCCTCTTCTTAGGAAATCCAAGGGCA GGCTGGTGAACATCAGCAGCATGGCAGGAGGGGTTCCAATGGAGAAGATGGCGGCCTACA GCTCAACCAAGGCAGCTCTGACCATGTTTTCGGCAGTCATGAGAAAAGAGCTATCCAAAT GGGGAGTTAAAGTCTCTGTCATCCAGCCTGGAAGCTTCCAAACAAACATCGCAGGCACGA GTGACCTGTGGGACAAGCTGGAGAAAAACATCCTGGATGACCTCACCCCTAACCTGCAGG AGGACTACGGCCAGGACTATATCCTTAAGCAACGCAGTTTTCTCAAGTTCATGAGCAACA GCTCTGAACCGGACGTCTCCCCAGTGCTCCTGGACGTCCAGCATGCCATCTCTGCTAAGA GCCCCTATGCATTTTACACGCCCGGAAAAATGTCTTTTTTGTGGCTCTGCTTTGCTTCAT TTAGCCCTACTGTCCTATTTGATTACTTTAGCAAAAGCTCACATAGTTTTACAAGGGGCA TGCCCAGAGCATTGAGCAAGGCTAACTGGAAGAATGAGGCCATGTAGGCAAATACGTGGG AAATGTTCTATTGTTGGAATGAAAGGGAGTTTCCTGCTTCCCATTAAAATTGTGGTTTAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGACTGGTTTAAATTACCCACCAGGAAATATGTGGCTGTAGGAGTATGCTTAATTCATG CTCATTGAAAGTGAGCCAGGGCTGTTTTCTCCCCCTCCCTCCTTGCCTCCCGGTTCATAT AACCCCCGCTGCCTCCAGCCTGCCTTTGCCCACTTGACTTGCTGGCCCTGAGCACGGAGA GGTGCAGGGAGAATCTGAGAATGGGCACGTTCTTCTCTGAGACAGGGTGGCTCTGCCTGA CTGTCACGGCAGTGCTGGGAGCAGTAATTCTTTGCAAACTCAAGAAGAACCACAGGCAGG AGGGCAGAAAGATGGTCTGCCTGGCTGGCCTCTGGGGAGGGGCTTGCCTGCTCAGCCTCT CTCTCTTCTGGGGCTTGATCCTCTTCTCCCTGTCATGTTTTCTCATGTATGCTTACTTTT CTGGCCAAGAGTTTTTACCTGTGGATCAAAAGGCGGTGCTGATCACAGGTGGCGATTCTG GGATTGGCCATGCTTTGTCCAAGTATCTGGATAAGCTGGGATTCACAGTATTTGCTGGAG TTCTGGATGAAAAGGGATCAGGAGCAGAGGAACTACGAAGAACCTGCTCCAAGCACCTGT CTGTGCTCCAGCTGGACATCACCAACTCGCAGCAGATAAGAGATGCTCACAGCAAAGTGA TGGAAAAGGTGCAGAACAGAGGACTGTGGGCTGTGGTCAACAACGCAGGGATCCTTGGCT TCCCAATCGATGGGGAGCTCATTCCCATGACCCAATACAAACGATGCATGGCCGTGAACT TCTTCGGGGCCGTGGAAGTCACCAAGGCATTTTTGCCTCTTCTTAGGAAATCCAAGGGCA GGCTGGTGAACATCAGCAGCATGGCAGGAGGGGTTCCAATGGAGAAGATGGCGGCCTACA GCTCAACCAAGGCAGCTCTGACCATGTTTTCGGCAGTCATGAGAAAAGAGCTATCCAAAT GGGGAGTTAAAGTCTCTGTCATCCAGCCTGGAAGCTTCCAAACAAACATCGCAGGCACGA GTGACCTGTGGGACAAGCTGGAGAAAAACATCCTGGATGACCTCACCCCTAACCTGCAGG AGGACTACGGCCAGGACTATATCCTTAAGCAACGCAGTTTTCTCAAGTTCATGAGCAACA GCTCTGAACCGGACGTCTCCCCAGTGCTCCTGGACGTCCAGCATGCCATCTCTGCTAAGA GCCCCTATGCATTTTACACGCCCGGAAAAATGTCTTTTTTGTGGCTCTGCTTTGCTTCAT TTAGCCCTACTGTCCTATTTGATTACTTTAGCAAAAGCTCACATAGTTTTACAAGGGGCA TGCCCAGAGCATTGAGCAAGGCTAACTGGAAGAATGAGGCCATGTAGGCAAATACGTGGG AAATGTTCTATTGTTGGAATGAAAGGGAGTTTCCTGCTTCCCATTAAAATTGTGGTTTAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 86-195, - strand, RNAz p=0.738066 | |
| 749-1161, - strand, RNAz p=0.756739 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 86-195, - strand, RNAz p=0.738066 | |
| 749-1161, - strand, RNAz p=0.756739 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 1-470, gnl|bosTau2|chr18 (8160671-8160203) | |
| 1-470, gnl|canFam2|chr5 (73015587-73014995) | |
| 1-470, gnl|echTel1|scaffold_241950 (718-107) | |
| 1-470, gnl|hg17|chr16 (80626220-80626808) | |
| 1-470, gnl|Hg17|chr16 (80626343-80626797) | |
| 1-470, gnl|loxAfr1|scaffold_1317 (5551-4947) | |
| 1-470, gnl|mm7|chr8 (116314612-116315218) | |
| 1-470, gnl|Mm7|chr8 (116314750-116315207) | |
| 1-470, gnl|monDom2|scaffold_1 (133441617-133441091) | |
| 1-470, gnl|oryCun1|scaffold_185035 (22223-21635) | |
| 1-470, gnl|panTro1|chr18 (75504489-75505077) | |
| 1-470, gnl|rheMac2|chr20 (80175559-80176145) | |
| 1-470, gnl|rn3|chr19 (47808087-47807498) | |
| 669-867, gnl|bosTau2|chr11 (19104027-19103829) | |
| 669-867, gnl|Hg17|chr16 (80662045-80662233) | |
| 669-867, gnl|Mm7|chr8 (116355264-116355459) | |
| 1003-1438, gnl|bosTau2|chr18 (8269769-8270205) | |
| 1003-1438, gnl|canFam2|chr5 (72934647-72934250) | |
| 1003-1438, gnl|dasNov1|scaffold_126768 (4690-4286) | |
| 1003-1438, gnl|echTel1|scaffold_283494 (13067-13466) | |
| 1003-1438, gnl|hg17|chr16 (80689143-80689538) | |
| 1003-1438, gnl|Hg17|chr16 (80689178-80689629) | |
| 1003-1438, gnl|loxAfr1|scaffold_27810 (8728-9124) | |
| 1003-1438, gnl|mm7|chr8 (116371508-116371899) | |
| 1003-1438, gnl|Mm7|chr8 (116371544-116371961) | |
| 1003-1438, gnl|monDom2|scaffold_1 (133355177-133354784) | |
| 1003-1438, gnl|oryCun1|scaffold_184023 (97266-96840) | |
| 1003-1438, gnl|panTro1|chr18 (75567260-75567655) | |
| 1003-1438, gnl|rheMac2|chr20 (80238907-80239301) | |
| 1003-1438, gnl|rn3|chr19 (47734854-47734473) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-470, gnl|bosTau2|chr18 (8160671-8160203) | |
| 1-470, gnl|canFam2|chr5 (73015587-73014995) | |
| 1-470, gnl|echTel1|scaffold_241950 (718-107) | |
| 1-470, gnl|hg17|chr16 (80626220-80626808) | |
| 1-470, gnl|Hg17|chr16 (80626343-80626797) | |
| 1-470, gnl|loxAfr1|scaffold_1317 (5551-4947) | |
| 1-470, gnl|mm7|chr8 (116314612-116315218) | |
| 1-470, gnl|Mm7|chr8 (116314750-116315207) | |
| 1-470, gnl|monDom2|scaffold_1 (133441617-133441091) | |
| 1-470, gnl|oryCun1|scaffold_185035 (22223-21635) | |
| 1-470, gnl|panTro1|chr18 (75504489-75505077) | |
| 1-470, gnl|rheMac2|chr20 (80175559-80176145) | |
| 1-470, gnl|rn3|chr19 (47808087-47807498) | |
| 669-867, gnl|bosTau2|chr11 (19104027-19103829) | |
| 669-867, gnl|Hg17|chr16 (80662045-80662233) | |
| 669-867, gnl|Mm7|chr8 (116355264-116355459) | |
| 1003-1438, gnl|bosTau2|chr18 (8269769-8270205) | |
| 1003-1438, gnl|canFam2|chr5 (72934647-72934250) | |
| 1003-1438, gnl|dasNov1|scaffold_126768 (4690-4286) | |
| 1003-1438, gnl|echTel1|scaffold_283494 (13067-13466) | |
| 1003-1438, gnl|hg17|chr16 (80689143-80689538) | |
| 1003-1438, gnl|Hg17|chr16 (80689178-80689629) | |
| 1003-1438, gnl|loxAfr1|scaffold_27810 (8728-9124) | |
| 1003-1438, gnl|mm7|chr8 (116371508-116371899) | |
| 1003-1438, gnl|Mm7|chr8 (116371544-116371961) | |
| 1003-1438, gnl|monDom2|scaffold_1 (133355177-133354784) | |
| 1003-1438, gnl|oryCun1|scaffold_184023 (97266-96840) | |
| 1003-1438, gnl|panTro1|chr18 (75567260-75567655) | |
| 1003-1438, gnl|rheMac2|chr20 (80238907-80239301) | |
| 1003-1438, gnl|rn3|chr19 (47734854-47734473) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| bla (1.61651) | |
| lun (0.601956) | |
| fli (0.405762) | |
| sin (0.349895) | |
| nje (0.33184) | |
| cki (0.330469) | |
| nco (0.323468) | |
| cli (0.305623) | |
| eli (0.303628) | |
| nlu (0.191681) | |
| rec (0.17307) | |
| cut (0.169924) | |
| cst (0.140036) | |
| ute (0.132784) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| bla (1.61651) | |
| lun (0.601956) | |
| fli (0.405762) | |
| sin (0.349895) | |
| nje (0.33184) | |
| cki (0.330469) | |
| nco (0.323468) | |
| cli (0.305623) | |
| eli (0.303628) | |
| nlu (0.191681) | |
| rec (0.17307) | |
| cut (0.169924) | |
| cst (0.140036) | |
| ute (0.132784) | |
| jej (0.0989218) | |
| eje (0.0988338) |