Non-Coding RNA Search

Ss1.1-Tra1-TCH01E080103.5

Sequence:


               
               ACCGGCGCCTTCTCCTTGCTTCTTGGGGTCGTGGCCTTGCTCCCGCTGTGCAAGGCGAGA
GTCCGGGCGCGTCCACGCGCGTGTGTGCGCGTGGGACCTTTAGAGTTCGTGGGTCCGCGC
TAGGTCTCTCTGGGGGCAGAAGCAGAAGCTATGGGCGGGACGGCTAGCACTCGTCGGGTC
ACCTTCGAGGCGGACGAGAATGAGAACATCACCGTGGTGAAGGGCATCCGGCTTTCGGAA
AATGTGATTGATCGTATGAAGGAAACCTCTCCATCTGGCCCGAAGTCTCAGCGGTATTCT
GGTGCTTACGGTGCCTCAGTTTCTGAGGAAGAATTGAAAAGAAGAGTGGCTGAGGAGCTG
GCATTGGAGCAGGCCAAGAAGGAATCTGAAAATCAGAAACGACTAAAGCAAGACAAAGAA
CTGGACCGAGAGAAGGCTTTTGCCAACGAGCAGTTAACCAGAGCCATTCTTCGCGAGAGG
ATAGCAAATGAGGAGGAGCGGGCTAAGGCTAAGCACCTGGCTAAGCAGCTGGAAGAAAAA
GATCGGGTGATAAAGAAGCAGGATGCATTCTACAAAGAGCAGCTGGCTAGACTGGAGGAG
AGGAGCTCAGAGTTCTACAAAGTCACCACTGAGCAGTACCAGAAAGCCGCTGAAGAGGTG
GAAGCAAAGTTCAAGCGGTATGAATGCCATCCCGTCTGTGCCGACCTGCAGGCCCAGATT
CTCCAGTGTTACCGCCAGAACACCCAGCAGACCCTCAGCTGCTCCGCTCTGGCCAGCGAG
TACATGCGCTGTGTCAATCAGGCCAAACAGAGCATGCTTGAAAAGGGAGGATAAAAGCAA
CTTTTAGAACAAGCAAAATTCCCTCAACGTTAATTCCAGAGGTGGAACATTTTTTTTTTC
CTAGTAAGAAAGTAACCCATTTAAAGAGAAGACCGTTAAAGAGAAGCATCAGAGAGCAGA
TTCATCAGAAGCATATCACAGTTTGATCAGCAACAGTTTGAAAAGCCAAGGCCTCCGTCA
GGGATGAGCCATCAAGGACGTGCTGCAGTGTTAATAAACCTCATTTATGATGATTAAAAA
GAAAGGTCGCCCTCTCCACCTTCTGTGCTTTCTATTCAGCTTCCTCTCCTAACCAAGCCC
CATCATTTGGTGACCCTTCCGTCCCACTAAGCTGGGGGTTGGCGTCGAGGGCTAAGGTCT
TTGGAGTGGGGAAAACCTTCCATTTCAGGCCAGCTGCACCAGGCGGAATTGGCTAGGCTG
GGGCATGGTGGGGTGCTCTTTTTCTTTTTTCCTTTGACTATGTAAGAGCTTCTTTATTTT
AACTCATGGTGATCATGTAAGAAGACGAAAGGCAAGAAAATGTACCTCTCTTACTGGAAT
AATGTTTCTGGTTAAACGTGAAATAAGGCATCTTTTTATCAATATGAAGGCAACTTGGCT
TCCCCCACCCTCTCCTCTGTCATGAATACTGACATCTTCACCCACCATCAATAATAAATC
TATTTTCTGATGAAGACTGGCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCGGCGCCTTCTCCTTGCTTCTTGGGGTCGTGGCCTTGCTCCCGCTGTGCAAGGCGAGA
GTCCGGGCGCGTCCACGCGCGTGTGTGCGCGTGGGACCTTTAGAGTTCGTGGGTCCGCGC
TAGGTCTCTCTGGGGGCAGAAGCAGAAGCTATGGGCGGGACGGCTAGCACTCGTCGGGTC
ACCTTCGAGGCGGACGAGAATGAGAACATCACCGTGGTGAAGGGCATCCGGCTTTCGGAA
AATGTGATTGATCGTATGAAGGAAACCTCTCCATCTGGCCCGAAGTCTCAGCGGTATTCT
GGTGCTTACGGTGCCTCAGTTTCTGAGGAAGAATTGAAAAGAAGAGTGGCTGAGGAGCTG
GCATTGGAGCAGGCCAAGAAGGAATCTGAAAATCAGAAACGACTAAAGCAAGACAAAGAA
CTGGACCGAGAGAAGGCTTTTGCCAACGAGCAGTTAACCAGAGCCATTCTTCGCGAGAGG
ATAGCAAATGAGGAGGAGCGGGCTAAGGCTAAGCACCTGGCTAAGCAGCTGGAAGAAAAA
GATCGGGTGATAAAGAAGCAGGATGCATTCTACAAAGAGCAGCTGGCTAGACTGGAGGAG
AGGAGCTCAGAGTTCTACAAAGTCACCACTGAGCAGTACCAGAAAGCCGCTGAAGAGGTG
GAAGCAAAGTTCAAGCGGTATGAATGCCATCCCGTCTGTGCCGACCTGCAGGCCCAGATT
CTCCAGTGTTACCGCCAGAACACCCAGCAGACCCTCAGCTGCTCCGCTCTGGCCAGCGAG
TACATGCGCTGTGTCAATCAGGCCAAACAGAGCATGCTTGAAAAGGGAGGATAAAAGCAA
CTTTTAGAACAAGCAAAATTCCCTCAACGTTAATTCCAGAGGTGGAACATTTTTTTTTTC
CTAGTAAGAAAGTAACCCATTTAAAGAGAAGACCGTTAAAGAGAAGCATCAGAGAGCAGA
TTCATCAGAAGCATATCACAGTTTGATCAGCAACAGTTTGAAAAGCCAAGGCCTCCGTCA
GGGATGAGCCATCAAGGACGTGCTGCAGTGTTAATAAACCTCATTTATGATGATTAAAAA
GAAAGGTCGCCCTCTCCACCTTCTGTGCTTTCTATTCAGCTTCCTCTCCTAACCAAGCCC
CATCATTTGGTGACCCTTCCGTCCCACTAAGCTGGGGGTTGGCGTCGAGGGCTAAGGTCT
TTGGAGTGGGGAAAACCTTCCATTTCAGGCCAGCTGCACCAGGCGGAATTGGCTAGGCTG
GGGCATGGTGGGGTGCTCTTTTTCTTTTTTCCTTTGACTATGTAAGAGCTTCTTTATTTT
AACTCATGGTGATCATGTAAGAAGACGAAAGGCAAGAAAATGTACCTCTCTTACTGGAAT
AATGTTTCTGGTTAAACGTGAAATAAGGCATCTTTTTATCAATATGAAGGCAACTTGGCT
TCCCCCACCCTCTCCTCTGTCATGAATACTGACATCTTCACCCACCATCAATAATAAATC
TATTTTCTGATGAAGACTGGCAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               CHCH3_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               CHCH3_BOVIN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               808-1522, gnl|bosTau2|chr4 (52698034-52698768)
               

               
               808-1522, gnl|Hg17|chr7 (131927679-131926878)
               

               
               808-1522, gnl|Mm7|chr6 (32724147-32723435)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               808-1522, gnl|bosTau2|chr4 (52698034-52698768)
               

               
               808-1522, gnl|Hg17|chr7 (131927679-131926878)
               

               
               808-1522, gnl|Mm7|chr6 (32724147-32723435)

Expressed library(ies): 34 entry(ies)

More info

Expressed library(ies): 34 entry(ies)

Help | Less info


               
               tbr (0.770891)
               

               
               fty (0.703359)
               

               
               cbl (0.573987)
               

               
               amn (0.417711)
               

               
               col (0.390016)
               

               
               ill (0.351185)
               

               
               sme (0.305437)
               

               
               spl (0.286369)
               

               
               cst (0.280073)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 34 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.770891)
               

               
               fty (0.703359)
               

               
               cbl (0.573987)
               

               
               amn (0.417711)
               

               
               col (0.390016)
               

               
               ill (0.351185)
               

               
               sme (0.305437)
               

               
               spl (0.286369)
               

               
               cst (0.280073)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               nlu (0.191681)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	808-1522, gnl\|bosTau2\|chr4 (52698034-52698768)
	808-1522, gnl\|Hg17\|chr7 (131927679-131926878)
	808-1522, gnl\|Mm7\|chr6 (32724147-32723435)

	tbr (0.770891)
	fty (0.703359)
	cbl (0.573987)
	amn (0.417711)
	col (0.390016)
	ill (0.351185)
	sme (0.305437)
	spl (0.286369)
	cst (0.280073)
	mas (0.210305)
	tes (0.207814)
	nlu (0.191681)
	duo (0.172801)
	eye (0.170503)
	cki (0.165235)
	cje (0.165235)
	nco (0.161734)
	isp (0.150376)
	hlv (0.139256)
	ssp (0.13552)
	cov (0.132153)
	sug (0.127291)
	ese (0.126502)
	bla (0.124347)
	eep (0.122564)
	cly (0.120642)
	clu (0.119646)
	ebs (0.118301)
	ecc (0.115035)
	jca (0.11396)
	spc (0.113366)
	jej (0.0989218)
	eje (0.0988338)
	ldo (0.0970026)