Ss1.1-Tra1-TCH01E090048.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGTGCGTCCAGGGCGGAGGGTGACGGGAAGCCACCGGTGCCCGAGGAGTCACCTTTGGG ACGCTTGTTTCGGAGCGTTGCACAAACCCGAGCGCCAACCCCGAGAGCTCACCGGCATTA TATCTGGGTGCTGGCACCCAGCCACTCCTCTGCCAATGAAGTACATCTTGGTCACTGGTG GGGTCATCTCGGGCATCGGTAAAGGGATCATCGCCAGCAGCATTGGGACGATTCTAAAAT CATGTGGACTCCGAGTTACTGCCATCAAAATCGACCCCTATATAAACATCGATGCAGGCA CTTTTTCGCCTTATGAGCACGGTGAAGTGTTTGTCTTAAACGATGGTGGAGAAGTTGATT TAGACCTGGGAAATTATGAAAGGTTCTTGGATATTAATCTTTATAAAGACAACAACATCA CTACGGGGAAGATATATCAACACGTGATCAATAAAGAGAGGCGTGGCGATTACCTGGGAA AAACAGTACAAGTTGTCCCTCACATTACTGATGCTGTCCAGGAGTGGGTTATGAATCAAG CCACGGTGCCTGTGGATGGTCATAAGGAAGAGCCCCAGATATGCGTTATTGAGCTGGGTG GCACCATCGGAGACATCGAAGGAATGCCCTTTGTGGAAGCGTTCAGACAATTCCAGTTTA AAGCGAAAAGGGAAAATTTCTGTAATATCCATGTTAGCCTTGTCCCCCAGCCCAGTGCTA CCGGAGAACAGAAGACCAAACCTACACAGAACAGTGTCCGTGCGCTGAGGGGGTTAGGCC TGTCTCCCGACCTGATTGTCTGCCGAAGCTCAACGCCCATCGAAATGGCTGTGAAGGAAA AGATTTCCATGTTTTGTCACGTGAAGCCCGAACAGGTCATATGTATCCACGATGTTTCTT CCACCTACCGAGTGCCTGTGCTTTTGGAGGAACAAGGCATCGTTAAATATTTTAAAGAGA GATTGGATCTGCCCATTGGGGATTCTGCAAGTAATTTGCTTTTCAAGTGGAGAAATATGG CTGACAGGTATGAAAGGTTACAGAAAACGTGTTCCATAGCCCTGGTTGGCAAGTACACCA AGCTCAGGGACTGCTACGCCTCCGTGTTCAAAGCCCTGGAACACTCAGCTTTGGCCATCA ACCACAAGTTGAATCTGATGTACATAGACTCCATCGATCTGGAGCAGACCACCGAAACTG AGGACCCTGTGAAATTCCACGAAGCTTGGCAGAAGCTCTGCAAAGCTGATGGTGTTCTTG TGCCAGGAGGCTTCGGAATCAGAGGAACCTTGGGAAAACTCCAGGCGATTTCTTGGGCAA GGGCAAGGAAGATTCCTTTTCTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGTGCGTCCAGGGCGGAGGGTGACGGGAAGCCACCGGTGCCCGAGGAGTCACCTTTGGG ACGCTTGTTTCGGAGCGTTGCACAAACCCGAGCGCCAACCCCGAGAGCTCACCGGCATTA TATCTGGGTGCTGGCACCCAGCCACTCCTCTGCCAATGAAGTACATCTTGGTCACTGGTG GGGTCATCTCGGGCATCGGTAAAGGGATCATCGCCAGCAGCATTGGGACGATTCTAAAAT CATGTGGACTCCGAGTTACTGCCATCAAAATCGACCCCTATATAAACATCGATGCAGGCA CTTTTTCGCCTTATGAGCACGGTGAAGTGTTTGTCTTAAACGATGGTGGAGAAGTTGATT TAGACCTGGGAAATTATGAAAGGTTCTTGGATATTAATCTTTATAAAGACAACAACATCA CTACGGGGAAGATATATCAACACGTGATCAATAAAGAGAGGCGTGGCGATTACCTGGGAA AAACAGTACAAGTTGTCCCTCACATTACTGATGCTGTCCAGGAGTGGGTTATGAATCAAG CCACGGTGCCTGTGGATGGTCATAAGGAAGAGCCCCAGATATGCGTTATTGAGCTGGGTG GCACCATCGGAGACATCGAAGGAATGCCCTTTGTGGAAGCGTTCAGACAATTCCAGTTTA AAGCGAAAAGGGAAAATTTCTGTAATATCCATGTTAGCCTTGTCCCCCAGCCCAGTGCTA CCGGAGAACAGAAGACCAAACCTACACAGAACAGTGTCCGTGCGCTGAGGGGGTTAGGCC TGTCTCCCGACCTGATTGTCTGCCGAAGCTCAACGCCCATCGAAATGGCTGTGAAGGAAA AGATTTCCATGTTTTGTCACGTGAAGCCCGAACAGGTCATATGTATCCACGATGTTTCTT CCACCTACCGAGTGCCTGTGCTTTTGGAGGAACAAGGCATCGTTAAATATTTTAAAGAGA GATTGGATCTGCCCATTGGGGATTCTGCAAGTAATTTGCTTTTCAAGTGGAGAAATATGG CTGACAGGTATGAAAGGTTACAGAAAACGTGTTCCATAGCCCTGGTTGGCAAGTACACCA AGCTCAGGGACTGCTACGCCTCCGTGTTCAAAGCCCTGGAACACTCAGCTTTGGCCATCA ACCACAAGTTGAATCTGATGTACATAGACTCCATCGATCTGGAGCAGACCACCGAAACTG AGGACCCTGTGAAATTCCACGAAGCTTGGCAGAAGCTCTGCAAAGCTGATGGTGTTCTTG TGCCAGGAGGCTTCGGAATCAGAGGAACCTTGGGAAAACTCCAGGCGATTTCTTGGGCAA GGGCAAGGAAGATTCCTTTTCTGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 64 entry(ies) | More info |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
| 2-115, gnl|bosTau2|chrX (40362536-40362426) | |
| 2-115, gnl|canFam2|chrX (12820390-12820819) | |
| 2-115, gnl|hg17|chrX (16490205-16490634) | |
| 2-115, gnl|Hg17|chrX (16490449-16490339) | |
| 2-115, gnl|mm7|chrX (157676191-157675754) | |
| 2-115, gnl|Mm7|chrX (157675952-157676069) | |
| 2-115, gnl|rn3|chrX (52588165-52588584) | |
| 117-323, gnl|bosTau2|chrX (40356722-40356516) | |
| 117-323, gnl|canFam2|chrX (12814906-12815092) | |
| 117-323, gnl|danRer3|chr19 (39966034-39965865) | |
| 117-323, gnl|dasNov1|scaffold_101443 (1335-1499) | |
| 117-323, gnl|echTel1|scaffold_291715 (86190-86016) | |
| 117-323, gnl|fr1|chrUn (97365570-97365385) | |
| 117-323, gnl|galGal2|chr1 (114769754-114769568) | |
| 117-323, gnl|hg17|chrX (16480498-16480684) | |
| 117-323, gnl|Hg17|chrX (16480721-16480515) | |
| 117-323, gnl|loxAfr1|scaffold_8387 (52042-52228) | |
| 117-323, gnl|mm7|chrX (157678017-157677835) | |
| 117-323, gnl|Mm7|chrX (157677796-157678002) | |
| 117-323, gnl|monDom2|scaffold_25 (22981311-22981132) | |
| 117-323, gnl|oryCun1|scaffold_156597 (7137-6951) | |
| 117-323, gnl|panTro1|chrX (16960406-16960592) | |
| 117-323, gnl|rheMac2|chr1 (43875358-43875171) | |
| 117-323, gnl|rn3|chrX (52586608-52586784) | |
| 117-323, gnl|tetNig1|chrUn_random (135018889-135018721) | |
| 117-323, gnl|xenTro1|scaffold_403 (564382-564551) | |
| 592-710, gnl|bosTau2|chrX (40339679-40339561) | |
| 592-710, gnl|canFam2|chrX (12795564-12795710) | |
| 592-710, gnl|danRer3|chr19 (39967249-39967098) | |
| 592-710, gnl|dasNov1|scaffold_147508 (774-631) | |
| 592-710, gnl|echTel1|scaffold_302489 (7962-7815) | |
| 592-710, gnl|fr1|chrUn (97366175-97366054) | |
| 592-710, gnl|galGal2|chr1 (114773970-114773840) | |
| 592-710, gnl|hg17|chrX (16471150-16471301) | |
| 592-710, gnl|Hg17|chrX (16471269-16471151) | |
| 592-710, gnl|loxAfr1|scaffold_8387 (37876-38014) | |
| 592-710, gnl|mm7|chrX (157695680-157695532) | |
| 592-710, gnl|Mm7|chrX (157695559-157695677) | |
| 592-710, gnl|monDom2|scaffold_25 (22998233-22998087) | |
| 592-710, gnl|oryCun1|scaffold_199047 (52065-51919) | |
| 592-710, gnl|panTro1|chrX (16950248-16950399) | |
| 592-710, gnl|rheMac2|chrX (14439756-14439907) | |
| 592-710, gnl|rn3|chrX (52560274-52560422) | |
| 592-710, gnl|tetNig1|chrUn_random (135019514-135019393) | |
| 592-710, gnl|xenTro1|scaffold_403 (560226-560364) | |
| 873-1030, gnl|bosTau2|chrX (40334972-40334815) | |
| 873-1030, gnl|canFam2|chrX (12790935-12791104) | |
| 873-1030, gnl|danRer3|chr19 (39969295-39969127) | |
| 873-1030, gnl|dasNov1|scaffold_32180 (5419-5250) | |
| 873-1030, gnl|echTel1|scaffold_164898 (3351-3182) | |
| 873-1030, gnl|fr1|chrUn (97367107-97366951) | |
| 873-1030, gnl|galGal2|chr1 (114781093-114780936) | |
| 873-1030, gnl|hg17|chrX (16467216-16467385) | |
| 873-1030, gnl|Hg17|chrX (16467384-16467227) | |
| 873-1030, gnl|loxAfr1|scaffold_30506 (44625-44465) | |
| 873-1030, gnl|mm7|chrX (157701934-157701765) | |
| 873-1030, gnl|Mm7|chrX (157701764-157701921) | |
| 873-1030, gnl|monDom2|scaffold_25 (23022250-23022081) | |
| 873-1030, gnl|oryCun1|scaffold_199047 (58650-58481) | |
| 873-1030, gnl|panTro1|chrX (16946304-16946473) | |
| 873-1030, gnl|rheMac2|chrX (14435522-14435691) | |
| 873-1030, gnl|rn3|chrX (52535326-52535495) | |
| 873-1030, gnl|tetNig1|chrUn_random (135020316-135020162) | |
| 873-1030, gnl|xenTro1|scaffold_403 (550361-550518) |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-115, gnl|bosTau2|chrX (40362536-40362426) | |
| 2-115, gnl|canFam2|chrX (12820390-12820819) | |
| 2-115, gnl|hg17|chrX (16490205-16490634) | |
| 2-115, gnl|Hg17|chrX (16490449-16490339) | |
| 2-115, gnl|mm7|chrX (157676191-157675754) | |
| 2-115, gnl|Mm7|chrX (157675952-157676069) | |
| 2-115, gnl|rn3|chrX (52588165-52588584) | |
| 117-323, gnl|bosTau2|chrX (40356722-40356516) | |
| 117-323, gnl|canFam2|chrX (12814906-12815092) | |
| 117-323, gnl|danRer3|chr19 (39966034-39965865) | |
| 117-323, gnl|dasNov1|scaffold_101443 (1335-1499) | |
| 117-323, gnl|echTel1|scaffold_291715 (86190-86016) | |
| 117-323, gnl|fr1|chrUn (97365570-97365385) | |
| 117-323, gnl|galGal2|chr1 (114769754-114769568) | |
| 117-323, gnl|hg17|chrX (16480498-16480684) | |
| 117-323, gnl|Hg17|chrX (16480721-16480515) | |
| 117-323, gnl|loxAfr1|scaffold_8387 (52042-52228) | |
| 117-323, gnl|mm7|chrX (157678017-157677835) | |
| 117-323, gnl|Mm7|chrX (157677796-157678002) | |
| 117-323, gnl|monDom2|scaffold_25 (22981311-22981132) | |
| 117-323, gnl|oryCun1|scaffold_156597 (7137-6951) | |
| 117-323, gnl|panTro1|chrX (16960406-16960592) | |
| 117-323, gnl|rheMac2|chr1 (43875358-43875171) | |
| 117-323, gnl|rn3|chrX (52586608-52586784) | |
| 117-323, gnl|tetNig1|chrUn_random (135018889-135018721) | |
| 117-323, gnl|xenTro1|scaffold_403 (564382-564551) | |
| 592-710, gnl|bosTau2|chrX (40339679-40339561) | |
| 592-710, gnl|canFam2|chrX (12795564-12795710) | |
| 592-710, gnl|danRer3|chr19 (39967249-39967098) | |
| 592-710, gnl|dasNov1|scaffold_147508 (774-631) | |
| 592-710, gnl|echTel1|scaffold_302489 (7962-7815) | |
| 592-710, gnl|fr1|chrUn (97366175-97366054) | |
| 592-710, gnl|galGal2|chr1 (114773970-114773840) | |
| 592-710, gnl|hg17|chrX (16471150-16471301) | |
| 592-710, gnl|Hg17|chrX (16471269-16471151) | |
| 592-710, gnl|loxAfr1|scaffold_8387 (37876-38014) | |
| 592-710, gnl|mm7|chrX (157695680-157695532) | |
| 592-710, gnl|Mm7|chrX (157695559-157695677) | |
| 592-710, gnl|monDom2|scaffold_25 (22998233-22998087) | |
| 592-710, gnl|oryCun1|scaffold_199047 (52065-51919) | |
| 592-710, gnl|panTro1|chrX (16950248-16950399) | |
| 592-710, gnl|rheMac2|chrX (14439756-14439907) | |
| 592-710, gnl|rn3|chrX (52560274-52560422) | |
| 592-710, gnl|tetNig1|chrUn_random (135019514-135019393) | |
| 592-710, gnl|xenTro1|scaffold_403 (560226-560364) | |
| 873-1030, gnl|bosTau2|chrX (40334972-40334815) | |
| 873-1030, gnl|canFam2|chrX (12790935-12791104) | |
| 873-1030, gnl|danRer3|chr19 (39969295-39969127) | |
| 873-1030, gnl|dasNov1|scaffold_32180 (5419-5250) | |
| 873-1030, gnl|echTel1|scaffold_164898 (3351-3182) | |
| 873-1030, gnl|fr1|chrUn (97367107-97366951) | |
| 873-1030, gnl|galGal2|chr1 (114781093-114780936) | |
| 873-1030, gnl|hg17|chrX (16467216-16467385) | |
| 873-1030, gnl|Hg17|chrX (16467384-16467227) | |
| 873-1030, gnl|loxAfr1|scaffold_30506 (44625-44465) | |
| 873-1030, gnl|mm7|chrX (157701934-157701765) | |
| 873-1030, gnl|Mm7|chrX (157701764-157701921) | |
| 873-1030, gnl|monDom2|scaffold_25 (23022250-23022081) | |
| 873-1030, gnl|oryCun1|scaffold_199047 (58650-58481) | |
| 873-1030, gnl|panTro1|chrX (16946304-16946473) | |
| 873-1030, gnl|rheMac2|chrX (14435522-14435691) | |
| 873-1030, gnl|rn3|chrX (52535326-52535495) | |
| 873-1030, gnl|tetNig1|chrUn_random (135020316-135020162) | |
| 873-1030, gnl|xenTro1|scaffold_403 (550361-550518) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cje (0.330469) | |
| ton (0.1755) | |
| nje (0.16592) | |
| med (0.116252) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.330469) | |
| ton (0.1755) | |
| nje (0.16592) | |
| med (0.116252) |