Ss1.1-Tra1-TCH01E090064.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGCGTGCTGCGCCCCACGCTCTGCAAGGTTCCCGGCCATCGGCCATCGCAGCTGCGCCC CAAGGCGGGAGGCGGTTATAGGTACTCGTCTTCCTCTGGCCCGAGTCCTGTTGCATTCCT GCAGAGTGTAAGGCTGTCAGCCGCAGAGCACGGAGGAAGAGGGAGAGAATGGAACAGCTC CTCCTCCCCGGGGCGCGAGCAGCCCCAGCCGGCGGTGCGCTCCAGAGAAGCTGCTGAGAA GCCCGGCGGCCGGGAGGAACGTAGCTCTCTCGCCAGGGATTAAGGAGACTGAAGAGGCTG AAAATAGGCTGATGAGCTCCGTTGGTAGCCTCCACTATCTCACCATGACTGCCGAAAATC CCGCCGAAAATCCCACACCTGGAGACCTGGCTCTGACCCCCCTCGTCACTTGCAAACTCT GCCTGTGTGAGCAGTCTCTGGACAAGATGACCACACTCCAGGAATGCCGCTGCATCTTTT GCACAGCCTGTCTGAAACAATACATGCAGCTGGCAATTCGAGAAGGATGTGGGTCTCCCA TCACTTGCCCTGACATGGTGTGCCTGAACCACGGGACCCTGCAGGAGGCTGAGATTGCCT GTTTGGTACCTGTGGATCAGTTTCAGCTTTATCAGCGGTTAAAATTTGAACGAGAAGTTC ACTTGGACCCCTGCAGAACGTGGTGTCCTGTTGCAGACTGTCAGACAGTGTGCCCTGTTG CATCTAGTGACCCANGACAGCCGGTGCTGGTGGAGTGTCCTTCTTGCCACCTGAAGTTCT GCTCATGTTGCAAGGATGCTTGGCACGCAGAGGTCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGCGTGCTGCGCCCCACGCTCTGCAAGGTTCCCGGCCATCGGCCATCGCAGCTGCGCCC CAAGGCGGGAGGCGGTTATAGGTACTCGTCTTCCTCTGGCCCGAGTCCTGTTGCATTCCT GCAGAGTGTAAGGCTGTCAGCCGCAGAGCACGGAGGAAGAGGGAGAGAATGGAACAGCTC CTCCTCCCCGGGGCGCGAGCAGCCCCAGCCGGCGGTGCGCTCCAGAGAAGCTGCTGAGAA GCCCGGCGGCCGGGAGGAACGTAGCTCTCTCGCCAGGGATTAAGGAGACTGAAGAGGCTG AAAATAGGCTGATGAGCTCCGTTGGTAGCCTCCACTATCTCACCATGACTGCCGAAAATC CCGCCGAAAATCCCACACCTGGAGACCTGGCTCTGACCCCCCTCGTCACTTGCAAACTCT GCCTGTGTGAGCAGTCTCTGGACAAGATGACCACACTCCAGGAATGCCGCTGCATCTTTT GCACAGCCTGTCTGAAACAATACATGCAGCTGGCAATTCGAGAAGGATGTGGGTCTCCCA TCACTTGCCCTGACATGGTGTGCCTGAACCACGGGACCCTGCAGGAGGCTGAGATTGCCT GTTTGGTACCTGTGGATCAGTTTCAGCTTTATCAGCGGTTAAAATTTGAACGAGAAGTTC ACTTGGACCCCTGCAGAACGTGGTGTCCTGTTGCAGACTGTCAGACAGTGTGCCCTGTTG CATCTAGTGACCCANGACAGCCGGTGCTGGTGGAGTGTCCTTCTTGCCACCTGAAGTTCT GCTCATGTTGCAAGGATGCTTGGCACGCAGAGGTCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 370-487, - strand, RNAz p=0.615 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 370-487, - strand, RNAz p=0.615 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 275-487, gnl|bosTau2|chr27 (2881945-2881741) | |
| 275-487, gnl|canFam2|chr35 (20183611-20183896) | |
| 275-487, gnl|dasNov1|scaffold_161691 (3691-3407) | |
| 275-487, gnl|echTel1|scaffold_230093 (9344-9075) | |
| 275-487, gnl|galGal2|chr2 (60022788-60022542) | |
| 275-487, gnl|hg17|chr6 (18507652-18507937) | |
| 275-487, gnl|Hg17|chr6 (18507707-18507908) | |
| 275-487, gnl|loxAfr1|scaffold_11279 (65930-66239) | |
| 275-487, gnl|mm7|chr13 (46689391-46689672) | |
| 275-487, gnl|Mm7|chr13 (46689452-46689643) | |
| 275-487, gnl|monDom2|scaffold_3 (107566790-107567075) | |
| 275-487, gnl|oryCun1|scaffold_199457 (31590-31305) | |
| 275-487, gnl|panTro1|chr5 (18879548-18879833) | |
| 275-487, gnl|rheMac2|chr4 (18446201-18446486) | |
| 275-487, gnl|rn3|chr17 (23525436-23525151) | |
| 275-487, gnl|xenTro1|scaffold_64 (92733-92480) | |
| 653-816, gnl|bosTau2|chr1 (94056783-94056620) | |
| 653-816, gnl|canFam2|chr35 (20233512-20233679) | |
| 653-816, gnl|danRer3|chr16 (34273219-34273386) | |
| 653-816, gnl|dasNov1|scaffold_3040 (19825-19992) | |
| 653-816, gnl|echTel1|scaffold_244302 (5033-5200) | |
| 653-816, gnl|fr1|chrUn (97944485-97944652) | |
| 653-816, gnl|galGal2|chr2 (59994002-59993835) | |
| 653-816, gnl|hg17|chr6 (18565364-18565531) | |
| 653-816, gnl|Hg17|chr6 (18565363-18565526) | |
| 653-816, gnl|loxAfr1|scaffold_26379 (35778-35939) | |
| 653-816, gnl|mm7|chr13 (46719496-46719663) | |
| 653-816, gnl|Mm7|chr13 (46719495-46719658) | |
| 653-816, gnl|monDom2|scaffold_3 (107633119-107633286) | |
| 653-816, gnl|oryCun1|scaffold_193070 (4854-4687) | |
| 653-816, gnl|panTro1|chr5 (18937388-18937531) | |
| 653-816, gnl|rheMac2|chr4 (18503096-18503263) | |
| 653-816, gnl|rn3|chr17 (23493335-23493168) | |
| 653-816, gnl|tetNig1|chr10 (6125904-6125734) | |
| 653-816, gnl|xenTro1|scaffold_64 (86665-86498) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 275-487, gnl|bosTau2|chr27 (2881945-2881741) | |
| 275-487, gnl|canFam2|chr35 (20183611-20183896) | |
| 275-487, gnl|dasNov1|scaffold_161691 (3691-3407) | |
| 275-487, gnl|echTel1|scaffold_230093 (9344-9075) | |
| 275-487, gnl|galGal2|chr2 (60022788-60022542) | |
| 275-487, gnl|hg17|chr6 (18507652-18507937) | |
| 275-487, gnl|Hg17|chr6 (18507707-18507908) | |
| 275-487, gnl|loxAfr1|scaffold_11279 (65930-66239) | |
| 275-487, gnl|mm7|chr13 (46689391-46689672) | |
| 275-487, gnl|Mm7|chr13 (46689452-46689643) | |
| 275-487, gnl|monDom2|scaffold_3 (107566790-107567075) | |
| 275-487, gnl|oryCun1|scaffold_199457 (31590-31305) | |
| 275-487, gnl|panTro1|chr5 (18879548-18879833) | |
| 275-487, gnl|rheMac2|chr4 (18446201-18446486) | |
| 275-487, gnl|rn3|chr17 (23525436-23525151) | |
| 275-487, gnl|xenTro1|scaffold_64 (92733-92480) | |
| 653-816, gnl|bosTau2|chr1 (94056783-94056620) | |
| 653-816, gnl|canFam2|chr35 (20233512-20233679) | |
| 653-816, gnl|danRer3|chr16 (34273219-34273386) | |
| 653-816, gnl|dasNov1|scaffold_3040 (19825-19992) | |
| 653-816, gnl|echTel1|scaffold_244302 (5033-5200) | |
| 653-816, gnl|fr1|chrUn (97944485-97944652) | |
| 653-816, gnl|galGal2|chr2 (59994002-59993835) | |
| 653-816, gnl|hg17|chr6 (18565364-18565531) | |
| 653-816, gnl|Hg17|chr6 (18565363-18565526) | |
| 653-816, gnl|loxAfr1|scaffold_26379 (35778-35939) | |
| 653-816, gnl|mm7|chr13 (46719496-46719663) | |
| 653-816, gnl|Mm7|chr13 (46719495-46719658) | |
| 653-816, gnl|monDom2|scaffold_3 (107633119-107633286) | |
| 653-816, gnl|oryCun1|scaffold_193070 (4854-4687) | |
| 653-816, gnl|panTro1|chr5 (18937388-18937531) | |
| 653-816, gnl|rheMac2|chr4 (18503096-18503263) | |
| 653-816, gnl|rn3|chr17 (23493335-23493168) | |
| 653-816, gnl|tetNig1|chr10 (6125904-6125734) | |
| 653-816, gnl|xenTro1|scaffold_64 (86665-86498) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lnt (0.142308) |