Ss1.1-Tra1-TCH01E090090.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGAGCAGGGCGTCAAGGCCCTAGAGGTCAGAAAGCCGGGCCGCGGGCGGCACCGAGAGC TGGGGCCGGGATCGGGGACGCGCGAAGGTCAGTCCTGCTGGGGTTAGGTTGCTGGGCAGG CCGGAGCAGGGCGTCAAGGCCCTAGAGGTCAGAAAGCCGGGCCGCGGGCGGCACCGAGAG CTGGGGCCGGGATCGGGGACGCGCGAAGGTCAGGGAAGCAATCCTGGACCATGACTCAGC AGCCACTTCGAGGAGTGACCAGTCTGCGTTTCAACCAAGACCAAAGCTGCTTTTGCTGTG CCATGGAGACAGGTGTGCGCATCTACAACGTGGAGCCATTGATGGAGAAGGGGCATCTGG ACCATGAGCAGGTGGGCAGCATGGGCCTGGTGGAAATGCTGCACCGCTCCAACCTGCTGG CCCTGGTGGGCGGTGGTAGCAGCCCCAAGTTCTCAGAGATCTCAGTGCTGATCTGGGACG ATGCCCGGGAGGGCAAGGACTCCAAGGACAAGCTGGTGCTGGAGTTCACCTTCACCAAGC CAGTGCTGGCTGTGCGCATGCGCCATGACAAAATCGTGATCGTGCTGAAGAACCGCATCT ATGTGTACTCCTTCCCCGACAATCCCCGAAAGCTGTTTGAGTTTGACACCCGGGACAACC CCAAGGGGCTTTGTGACCTCTGCCCCAGCCTGGAGAAACAACTGCTAGTGTTCCCAGGAC ACAAGTGCGGGAGTCTGCAACTTGTGGACCTGGCGAGCACAAAGCCTGGCACTTCATCTG CTCCGTTTACCATCAATGCACATCAGAGTGACGTGGCCTGTGTGTCCCTGAACCAGCCAG GCACGGTAGTGGCCTCAGCCTCTCAGAAGGGCACCCTTATTCGCCTTTTTGACACGCAGT CCAAGGAGAAACTGGTGGAGCTGCGCCGAGGCACTGACCCAGCCACCCTCTACTGCATCA ACTTTAGCCATGATTCCTCCTTCCTGTGCGCGTCCAGCGATAAGGGCACAGTCCATATCT TTGCTCTCAAGGATACGCGCCTCAACCGCCGCTCCGCGCTGGCTCGCGTGGGCAAAGTGG GGCCTATGATTGGGCAGTACGTGGATTCTCAGTGGAGCCTGGCGAGCTTCACCGTGCCTG CTGAGTCAGCCTGCATCTGTGCTTTCGGTCGCAATACTTCCAAGAACGTCAACTCTGTCA TTGCCATCTGTGTAGATGGGACCTTCCACAAATATGTCTTCACTCCTGATGGAAACTGCA ACAGAGAGGCTTTCGATGTATACCTTGACATCTGTGATGATGATGACTTTTAAGGACCCT CTGGGTTGTGCTAGGGACTGCGGTGACAGATTGCAAAGCCTTTGTGGGGGTGGGAGTGCT GTGGAAGCCGCCAGCCATCAAGCATTAATGGAGCAGGTGCGCACTTTCCACTCTTGAGAG CAATGCCTAAACAGCTCAGGTCCCTCAAGCACTTCCCGATGACTGTGTGCCTGCAGGGCC AGGCCAGGGACTCAGGGAGGCAGCGGACCCCCTGGGGCTCCCGCCTGGAGAAGACTGCTA GGGACCCAGAGCGGGTGCCCTAATCCAACCTGTGGGGATTTTTAAAAACTTGCCAGAAAG AGACATCTCTGATGTGATGAAAATGAATAAAAGACCCTTAACGGTAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGAGCAGGGCGTCAAGGCCCTAGAGGTCAGAAAGCCGGGCCGCGGGCGGCACCGAGAGC TGGGGCCGGGATCGGGGACGCGCGAAGGTCAGTCCTGCTGGGGTTAGGTTGCTGGGCAGG CCGGAGCAGGGCGTCAAGGCCCTAGAGGTCAGAAAGCCGGGCCGCGGGCGGCACCGAGAG CTGGGGCCGGGATCGGGGACGCGCGAAGGTCAGGGAAGCAATCCTGGACCATGACTCAGC AGCCACTTCGAGGAGTGACCAGTCTGCGTTTCAACCAAGACCAAAGCTGCTTTTGCTGTG CCATGGAGACAGGTGTGCGCATCTACAACGTGGAGCCATTGATGGAGAAGGGGCATCTGG ACCATGAGCAGGTGGGCAGCATGGGCCTGGTGGAAATGCTGCACCGCTCCAACCTGCTGG CCCTGGTGGGCGGTGGTAGCAGCCCCAAGTTCTCAGAGATCTCAGTGCTGATCTGGGACG ATGCCCGGGAGGGCAAGGACTCCAAGGACAAGCTGGTGCTGGAGTTCACCTTCACCAAGC CAGTGCTGGCTGTGCGCATGCGCCATGACAAAATCGTGATCGTGCTGAAGAACCGCATCT ATGTGTACTCCTTCCCCGACAATCCCCGAAAGCTGTTTGAGTTTGACACCCGGGACAACC CCAAGGGGCTTTGTGACCTCTGCCCCAGCCTGGAGAAACAACTGCTAGTGTTCCCAGGAC ACAAGTGCGGGAGTCTGCAACTTGTGGACCTGGCGAGCACAAAGCCTGGCACTTCATCTG CTCCGTTTACCATCAATGCACATCAGAGTGACGTGGCCTGTGTGTCCCTGAACCAGCCAG GCACGGTAGTGGCCTCAGCCTCTCAGAAGGGCACCCTTATTCGCCTTTTTGACACGCAGT CCAAGGAGAAACTGGTGGAGCTGCGCCGAGGCACTGACCCAGCCACCCTCTACTGCATCA ACTTTAGCCATGATTCCTCCTTCCTGTGCGCGTCCAGCGATAAGGGCACAGTCCATATCT TTGCTCTCAAGGATACGCGCCTCAACCGCCGCTCCGCGCTGGCTCGCGTGGGCAAAGTGG GGCCTATGATTGGGCAGTACGTGGATTCTCAGTGGAGCCTGGCGAGCTTCACCGTGCCTG CTGAGTCAGCCTGCATCTGTGCTTTCGGTCGCAATACTTCCAAGAACGTCAACTCTGTCA TTGCCATCTGTGTAGATGGGACCTTCCACAAATATGTCTTCACTCCTGATGGAAACTGCA ACAGAGAGGCTTTCGATGTATACCTTGACATCTGTGATGATGATGACTTTTAAGGACCCT CTGGGTTGTGCTAGGGACTGCGGTGACAGATTGCAAAGCCTTTGTGGGGGTGGGAGTGCT GTGGAAGCCGCCAGCCATCAAGCATTAATGGAGCAGGTGCGCACTTTCCACTCTTGAGAG CAATGCCTAAACAGCTCAGGTCCCTCAAGCACTTCCCGATGACTGTGTGCCTGCAGGGCC AGGCCAGGGACTCAGGGAGGCAGCGGACCCCCTGGGGCTCCCGCCTGGAGAAGACTGCTA GGGACCCAGAGCGGGTGCCCTAATCCAACCTGTGGGGATTTTTAAAAACTTGCCAGAAAG AGACATCTCTGATGTGATGAAAATGAATAAAAGACCCTTAACGGTAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 838-1595, - strand, RNAz p=0.998219 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 838-1595, - strand, RNAz p=0.998219 |
| Aligned organism(s): 69 entry(ies) | More info |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
| 260-360, gnl|bosTau2|chrX (25914960-25914861) | |
| 260-360, gnl|canFam2|chrX (42174427-42174528) | |
| 260-360, gnl|canFam2|chrX (42174500-42174428) | |
| 260-360, gnl|dasNov1|scaffold_209979 (221-120) | |
| 260-360, gnl|dasNov1|scaffold_209979 (148-220) | |
| 260-360, gnl|echTel1|scaffold_24280 (3590-3517) | |
| 260-360, gnl|echTel1|scaffold_24280 (3517-3589) | |
| 260-360, gnl|fr1|chrUn (28491444-28491354) | |
| 260-360, gnl|fr1|chrUn (28491361-28491433) | |
| 260-360, gnl|hg17|chr4 (154937386-154937458) | |
| 260-360, gnl|hg17|chrX (48691736-48691846) | |
| 260-360, gnl|Hg17|chrX (48691845-48691745) | |
| 260-360, gnl|mm7|chrX (6157249-6157150) | |
| 260-360, gnl|mm7|chrX (6157176-6157248) | |
| 260-360, gnl|Mm7|chrX (6157146-6157248) | |
| 260-360, gnl|monDom2|scaffold_15 (28396829-28396929) | |
| 260-360, gnl|monDom2|scaffold_15 (28396902-28396830) | |
| 260-360, gnl|oryCun1|scaffold_133306 (907-846) | |
| 260-360, gnl|oryCun1|scaffold_164952 (716-815) | |
| 260-360, gnl|panTro1|chr3 (172274172-172274244) | |
| 260-360, gnl|panTro1|chrX (50009451-50009551) | |
| 260-360, gnl|rheMac2|chrX (46938434-46938534) | |
| 260-360, gnl|rheMac2|chrX (46938507-46938435) | |
| 260-360, gnl|rn3|chrX (26873924-26874022) | |
| 260-360, gnl|rn3|chrX (26873997-26873925) | |
| 260-360, gnl|tetNig1|chrUn_random (807310-807225) | |
| 260-360, gnl|tetNig1|chrUn_random (807232-807297) | |
| 260-360, gnl|xenTro1|scaffold_133 (1326849-1326761) | |
| 260-360, gnl|xenTro1|scaffold_133 (1326767-1326839) | |
| 463-571, gnl|bosTau2|chrX (25913818-25913710) | |
| 463-571, gnl|canFam2|chrX (42173211-42173333) | |
| 463-571, gnl|canFam2|chrX (42173333-42173224) | |
| 463-571, gnl|dasNov1|scaffold_209979 (1372-1250) | |
| 463-571, gnl|dasNov1|scaffold_209979 (1250-1359) | |
| 463-571, gnl|echTel1|scaffold_24280 (3693-3802) | |
| 463-571, gnl|echTel1|scaffold_298006 (22228-22350) | |
| 463-571, gnl|fr1|chrUn (28492358-28492242) | |
| 463-571, gnl|fr1|chrUn (28492242-28492426) | |
| 463-571, gnl|hg17|chr4 (154937561-154937670) | |
| 463-571, gnl|hg17|chrX (48690540-48690662) | |
| 463-571, gnl|Hg17|chrX (48690661-48690553) | |
| 463-571, gnl|loxAfr1|scaffold_86259 (7245-7367) | |
| 463-571, gnl|loxAfr1|scaffold_86259 (7367-7258) | |
| 463-571, gnl|mm7|chrX (6159201-6159079) | |
| 463-571, gnl|mm7|chrX (6159079-6159187) | |
| 463-571, gnl|Mm7|chrX (6159078-6159186) | |
| 463-571, gnl|monDom2|scaffold_15 (28396617-28396722) | |
| 463-571, gnl|monDom2|scaffold_15 (28396726-28396617) | |
| 463-571, gnl|oryCun1|scaffold_133306 (610-729) | |
| 463-571, gnl|oryCun1|scaffold_133306 (729-627) | |
| 463-571, gnl|panTro1|chr3 (172274347-172274456) | |
| 463-571, gnl|panTro1|chrX (50008245-50008367) | |
| 463-571, gnl|rheMac2|chr5 (145868032-145868141) | |
| 463-571, gnl|rheMac2|chrX (46937229-46937351) | |
| 463-571, gnl|rn3|chrX (26872218-26872340) | |
| 463-571, gnl|rn3|chrX (26872340-26872232) | |
| 463-571, gnl|tetNig1|chrUn_random (807909-807791) | |
| 463-571, gnl|tetNig1|chrUn_random (807791-807983) | |
| 463-571, gnl|xenTro1|scaffold_133 (1327200-1327093) | |
| 463-571, gnl|xenTro1|scaffold_133 (1327093-1327192) | |
| 746-955, gnl|bosTau2|chrX (25912834-25912625) | |
| 746-955, gnl|Hg17|chrX (48689662-48689453) | |
| 746-955, gnl|Mm7|chrX (6160027-6160236) | |
| 1203-1427, gnl|bosTau2|chrX (25911825-25911600) | |
| 1203-1427, gnl|Hg17|chrX (48688821-48688555) | |
| 1203-1427, gnl|Mm7|chrX (6160899-6161113) | |
| 1463-1666, gnl|bosTau2|chrX (25911598-25911389) | |
| 1463-1666, gnl|Hg17|chrX (48688553-48688350) | |
| 1463-1666, gnl|Mm7|chrX (6161115-6161338) |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 260-360, gnl|bosTau2|chrX (25914960-25914861) | |
| 260-360, gnl|canFam2|chrX (42174427-42174528) | |
| 260-360, gnl|canFam2|chrX (42174500-42174428) | |
| 260-360, gnl|dasNov1|scaffold_209979 (221-120) | |
| 260-360, gnl|dasNov1|scaffold_209979 (148-220) | |
| 260-360, gnl|echTel1|scaffold_24280 (3590-3517) | |
| 260-360, gnl|echTel1|scaffold_24280 (3517-3589) | |
| 260-360, gnl|fr1|chrUn (28491444-28491354) | |
| 260-360, gnl|fr1|chrUn (28491361-28491433) | |
| 260-360, gnl|hg17|chr4 (154937386-154937458) | |
| 260-360, gnl|hg17|chrX (48691736-48691846) | |
| 260-360, gnl|Hg17|chrX (48691845-48691745) | |
| 260-360, gnl|mm7|chrX (6157249-6157150) | |
| 260-360, gnl|mm7|chrX (6157176-6157248) | |
| 260-360, gnl|Mm7|chrX (6157146-6157248) | |
| 260-360, gnl|monDom2|scaffold_15 (28396829-28396929) | |
| 260-360, gnl|monDom2|scaffold_15 (28396902-28396830) | |
| 260-360, gnl|oryCun1|scaffold_133306 (907-846) | |
| 260-360, gnl|oryCun1|scaffold_164952 (716-815) | |
| 260-360, gnl|panTro1|chr3 (172274172-172274244) | |
| 260-360, gnl|panTro1|chrX (50009451-50009551) | |
| 260-360, gnl|rheMac2|chrX (46938434-46938534) | |
| 260-360, gnl|rheMac2|chrX (46938507-46938435) | |
| 260-360, gnl|rn3|chrX (26873924-26874022) | |
| 260-360, gnl|rn3|chrX (26873997-26873925) | |
| 260-360, gnl|tetNig1|chrUn_random (807310-807225) | |
| 260-360, gnl|tetNig1|chrUn_random (807232-807297) | |
| 260-360, gnl|xenTro1|scaffold_133 (1326849-1326761) | |
| 260-360, gnl|xenTro1|scaffold_133 (1326767-1326839) | |
| 463-571, gnl|bosTau2|chrX (25913818-25913710) | |
| 463-571, gnl|canFam2|chrX (42173211-42173333) | |
| 463-571, gnl|canFam2|chrX (42173333-42173224) | |
| 463-571, gnl|dasNov1|scaffold_209979 (1372-1250) | |
| 463-571, gnl|dasNov1|scaffold_209979 (1250-1359) | |
| 463-571, gnl|echTel1|scaffold_24280 (3693-3802) | |
| 463-571, gnl|echTel1|scaffold_298006 (22228-22350) | |
| 463-571, gnl|fr1|chrUn (28492358-28492242) | |
| 463-571, gnl|fr1|chrUn (28492242-28492426) | |
| 463-571, gnl|hg17|chr4 (154937561-154937670) | |
| 463-571, gnl|hg17|chrX (48690540-48690662) | |
| 463-571, gnl|Hg17|chrX (48690661-48690553) | |
| 463-571, gnl|loxAfr1|scaffold_86259 (7245-7367) | |
| 463-571, gnl|loxAfr1|scaffold_86259 (7367-7258) | |
| 463-571, gnl|mm7|chrX (6159201-6159079) | |
| 463-571, gnl|mm7|chrX (6159079-6159187) | |
| 463-571, gnl|Mm7|chrX (6159078-6159186) | |
| 463-571, gnl|monDom2|scaffold_15 (28396617-28396722) | |
| 463-571, gnl|monDom2|scaffold_15 (28396726-28396617) | |
| 463-571, gnl|oryCun1|scaffold_133306 (610-729) | |
| 463-571, gnl|oryCun1|scaffold_133306 (729-627) | |
| 463-571, gnl|panTro1|chr3 (172274347-172274456) | |
| 463-571, gnl|panTro1|chrX (50008245-50008367) | |
| 463-571, gnl|rheMac2|chr5 (145868032-145868141) | |
| 463-571, gnl|rheMac2|chrX (46937229-46937351) | |
| 463-571, gnl|rn3|chrX (26872218-26872340) | |
| 463-571, gnl|rn3|chrX (26872340-26872232) | |
| 463-571, gnl|tetNig1|chrUn_random (807909-807791) | |
| 463-571, gnl|tetNig1|chrUn_random (807791-807983) | |
| 463-571, gnl|xenTro1|scaffold_133 (1327200-1327093) | |
| 463-571, gnl|xenTro1|scaffold_133 (1327093-1327192) | |
| 746-955, gnl|bosTau2|chrX (25912834-25912625) | |
| 746-955, gnl|Hg17|chrX (48689662-48689453) | |
| 746-955, gnl|Mm7|chrX (6160027-6160236) | |
| 1203-1427, gnl|bosTau2|chrX (25911825-25911600) | |
| 1203-1427, gnl|Hg17|chrX (48688821-48688555) | |
| 1203-1427, gnl|Mm7|chrX (6160899-6161113) | |
| 1463-1666, gnl|bosTau2|chrX (25911598-25911389) | |
| 1463-1666, gnl|Hg17|chrX (48688553-48688350) | |
| 1463-1666, gnl|Mm7|chrX (6161115-6161338) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| cbr (0.767853) | |
| hea (0.204499) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| nje (0.16592) | |
| csp (0.161186) | |
| cli (0.152812) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| che (0.136314) | |
| cov (0.132153) | |
| bla (0.124347) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (0.767853) | |
| hea (0.204499) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| nje (0.16592) | |
| csp (0.161186) | |
| cli (0.152812) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| che (0.136314) | |
| cov (0.132153) | |
| bla (0.124347) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| nbm (0.0993246) |