Ss1.1-Tra1-TCH01E100034.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCGCGCGCTGGAGCCGGACGGCGGGCGCCGCCCACAGTGCTCCCGGGCCGGGCCGAGCG AGGCCATGGGGCGGTTGCTGGCTCTGAGCTTGCTGGGGATAGCGCTGGCGCTCCTGGGCG AGAGGCTCCTGGCGCTCAGGAATCGACTGAAAGCCTCCAGAGAAGTAGAATCTGTCGACC TTCCAAACTGCCACCTGATTAAAGGAATTGAAGCCGGCTCTGAAGATATTGACATACTTC CCAATGGTCTGGCTTTCTTTAGTGTGGGTCTGAAATGTCCAGGTCTCCACAGTTTTGCAC CAGATAAGCCTGGAGGAATACTAATGATGGATCTAAAAGAAGAAAACCCAAGGGCACTGG AATTAAGAATCAGCCGTGGATTTAATTTGGCTTCATTTAATCCACATGGTATCAGCACTT TCATAGACAGTGATGACACAGTTTATCTCTTTGTTGTAAACCATCCGGAATTCAAGAATA CAGTGGAAATTTTTAAATTTGAAGAGGAAGAAAATTCTCTTTTGCATCTAAAAACAATCA AACATGAGCTTCTTCCAAGTGTGAATGATATCATAGCTGTTGGACCAGCACATTTCTATG CTACCAATGACCACTATTTCTCTGATCCTTTCTTAAAGTATTTGGAAACATACCTGAACT TACACTGGACAAATGTTGTTTACTACAGTCCAAATGAAGTTAAAGTGGTAGCAGAAGGAT TTGATTCAGCAAATGGGATCAATATTTCACCTGATAAAAAGTACATCTATGTTGCTGATA TACTGGCTCATGAAATTCATGTTTTGGAAAAACAGCCTAATATGAACTTAACTCAATTGA AGGTACTCGAGTTGGATACACTGGTGGATAATATATCTATCGATCCTTCCTCCGGGGACA TCTTGGTAGGCTGTCATCCTAATGGCCAGAAGCTCTTCGTTTATGACCCGAACAATCCTC CCTCATCAGAGGTTCTCCGCATCCAGAATATTCTATCTGAGAAGCCTACAGTGACTACAG TTTATGCCAACAACGGATCTATTCTCCAGGGAAGTTCTGTGGCCTCTTTGTATGACAGGA AGCTTCTTATAGGCACTTTATACCACAGAGCCCTGTACTGTGAACTCTAAACTGTCTTTT TGCTCTGCAAGCGTGCTAGCCTCTATTAACAATTAATTTTCTATGAATTGTTAATTCTGA GGGAATTTAACCAGCAGCATTGACCCAGAAATGTATGATGTGTACAGTAAATTTTATTTC AGTATGGAAAGTCACCCTTCTTCACATAGCACTTTTAACATAAAAGGAAAATGAACAGTT TTTAAAATGCCAGGTAAAGGTGAGAGAAGGAACACTGCTTTCAGTAAAGTAAATTCACTT TACACAAAAATAAGTCTCATGTCTGCCTTCCAACTGCCAGAGTGAAAATTCCACTAAAAC AGGGTAGATTATATTTCCTTGAGTTACCTCAACTCCACTAGTGTGACCACTGTGACTCAG AACTACTGACAGATGTTGTGATGCTTTGGACTTACATCTTTGTTTACTATAAAGAGTTGG AGTTGTATTAAAGACTAACTGAAATCCAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCGCGCGCTGGAGCCGGACGGCGGGCGCCGCCCACAGTGCTCCCGGGCCGGGCCGAGCG AGGCCATGGGGCGGTTGCTGGCTCTGAGCTTGCTGGGGATAGCGCTGGCGCTCCTGGGCG AGAGGCTCCTGGCGCTCAGGAATCGACTGAAAGCCTCCAGAGAAGTAGAATCTGTCGACC TTCCAAACTGCCACCTGATTAAAGGAATTGAAGCCGGCTCTGAAGATATTGACATACTTC CCAATGGTCTGGCTTTCTTTAGTGTGGGTCTGAAATGTCCAGGTCTCCACAGTTTTGCAC CAGATAAGCCTGGAGGAATACTAATGATGGATCTAAAAGAAGAAAACCCAAGGGCACTGG AATTAAGAATCAGCCGTGGATTTAATTTGGCTTCATTTAATCCACATGGTATCAGCACTT TCATAGACAGTGATGACACAGTTTATCTCTTTGTTGTAAACCATCCGGAATTCAAGAATA CAGTGGAAATTTTTAAATTTGAAGAGGAAGAAAATTCTCTTTTGCATCTAAAAACAATCA AACATGAGCTTCTTCCAAGTGTGAATGATATCATAGCTGTTGGACCAGCACATTTCTATG CTACCAATGACCACTATTTCTCTGATCCTTTCTTAAAGTATTTGGAAACATACCTGAACT TACACTGGACAAATGTTGTTTACTACAGTCCAAATGAAGTTAAAGTGGTAGCAGAAGGAT TTGATTCAGCAAATGGGATCAATATTTCACCTGATAAAAAGTACATCTATGTTGCTGATA TACTGGCTCATGAAATTCATGTTTTGGAAAAACAGCCTAATATGAACTTAACTCAATTGA AGGTACTCGAGTTGGATACACTGGTGGATAATATATCTATCGATCCTTCCTCCGGGGACA TCTTGGTAGGCTGTCATCCTAATGGCCAGAAGCTCTTCGTTTATGACCCGAACAATCCTC CCTCATCAGAGGTTCTCCGCATCCAGAATATTCTATCTGAGAAGCCTACAGTGACTACAG TTTATGCCAACAACGGATCTATTCTCCAGGGAAGTTCTGTGGCCTCTTTGTATGACAGGA AGCTTCTTATAGGCACTTTATACCACAGAGCCCTGTACTGTGAACTCTAAACTGTCTTTT TGCTCTGCAAGCGTGCTAGCCTCTATTAACAATTAATTTTCTATGAATTGTTAATTCTGA GGGAATTTAACCAGCAGCATTGACCCAGAAATGTATGATGTGTACAGTAAATTTTATTTC AGTATGGAAAGTCACCCTTCTTCACATAGCACTTTTAACATAAAAGGAAAATGAACAGTT TTTAAAATGCCAGGTAAAGGTGAGAGAAGGAACACTGCTTTCAGTAAAGTAAATTCACTT TACACAAAAATAAGTCTCATGTCTGCCTTCCAACTGCCAGAGTGAAAATTCCACTAAAAC AGGGTAGATTATATTTCCTTGAGTTACCTCAACTCCACTAGTGTGACCACTGTGACTCAG AACTACTGACAGATGTTGTGATGCTTTGGACTTACATCTTTGTTTACTATAAAGAGTTGG AGTTGTATTAAAGACTAACTGAAATCCAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1327-1425, - strand, RNAz p=0.512846 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1327-1425, - strand, RNAz p=0.512846 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 266-432, gnl|bosTau2|chr4 (2547557-2547723) | |
| 266-432, gnl|Hg17|chr7 (94686441-94686275) | |
| 266-432, gnl|Mm7|chr6 (5226053-5225887) | |
| 551-763, gnl|bosTau2|chr4 (2550342-2550553) | |
| 551-763, gnl|canFam2|chr14 (23605379-23605606) | |
| 551-763, gnl|danRer3|chr16 (28143455-28143689) | |
| 551-763, gnl|dasNov1|scaffold_246464 (1792-1566) | |
| 551-763, gnl|echTel1|scaffold_324395 (2114-1889) | |
| 551-763, gnl|fr1|chrUn (174839046-174839268) | |
| 551-763, gnl|galGal2|chr2 (23162180-23162405) | |
| 551-763, gnl|hg17|chr7 (94683862-94684087) | |
| 551-763, gnl|Hg17|chr7 (94684072-94683861) | |
| 551-763, gnl|loxAfr1|scaffold_10613 (3738-3957) | |
| 551-763, gnl|mm7|chr6 (5221862-5222092) | |
| 551-763, gnl|Mm7|chr6 (5222072-5221861) | |
| 551-763, gnl|monDom2|scaffold_254 (339057-338844) | |
| 551-763, gnl|oryCun1|scaffold_201457 (10560-10341) | |
| 551-763, gnl|panTro1|chr6 (96294955-96295180) | |
| 551-763, gnl|rheMac2|chr3 (121857637-121857412) | |
| 551-763, gnl|rn3|chr4 (30077067-30077292) | |
| 551-763, gnl|tetNig1|chr8 (6231480-6231254) | |
| 551-763, gnl|xenTro1|scaffold_640 (250861-250638) | |
| 970-1589, gnl|bosTau2|chr4 (2555162-2555792) | |
| 970-1589, gnl|Hg17|chr7 (94679453-94678825) | |
| 970-1589, gnl|Mm7|chr6 (5218367-5217688) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 266-432, gnl|bosTau2|chr4 (2547557-2547723) | |
| 266-432, gnl|Hg17|chr7 (94686441-94686275) | |
| 266-432, gnl|Mm7|chr6 (5226053-5225887) | |
| 551-763, gnl|bosTau2|chr4 (2550342-2550553) | |
| 551-763, gnl|canFam2|chr14 (23605379-23605606) | |
| 551-763, gnl|danRer3|chr16 (28143455-28143689) | |
| 551-763, gnl|dasNov1|scaffold_246464 (1792-1566) | |
| 551-763, gnl|echTel1|scaffold_324395 (2114-1889) | |
| 551-763, gnl|fr1|chrUn (174839046-174839268) | |
| 551-763, gnl|galGal2|chr2 (23162180-23162405) | |
| 551-763, gnl|hg17|chr7 (94683862-94684087) | |
| 551-763, gnl|Hg17|chr7 (94684072-94683861) | |
| 551-763, gnl|loxAfr1|scaffold_10613 (3738-3957) | |
| 551-763, gnl|mm7|chr6 (5221862-5222092) | |
| 551-763, gnl|Mm7|chr6 (5222072-5221861) | |
| 551-763, gnl|monDom2|scaffold_254 (339057-338844) | |
| 551-763, gnl|oryCun1|scaffold_201457 (10560-10341) | |
| 551-763, gnl|panTro1|chr6 (96294955-96295180) | |
| 551-763, gnl|rheMac2|chr3 (121857637-121857412) | |
| 551-763, gnl|rn3|chr4 (30077067-30077292) | |
| 551-763, gnl|tetNig1|chr8 (6231480-6231254) | |
| 551-763, gnl|xenTro1|scaffold_640 (250861-250638) | |
| 970-1589, gnl|bosTau2|chr4 (2555162-2555792) | |
| 970-1589, gnl|Hg17|chr7 (94679453-94678825) | |
| 970-1589, gnl|Mm7|chr6 (5218367-5217688) |
| Expressed library(ies): 35 entry(ies) | More info |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
| ret (0.7724) | |
| fcc (0.39557) | |
| sug (0.381874) | |
| bla (0.373042) | |
| sme (0.305437) | |
| fat (0.294855) | |
| ski (0.29347) | |
| liv (0.292569) | |
| pla (0.267344) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| sag (0.182715) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| rec (0.17307) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| lin (0.145603) | |
| spl (0.143184) | |
| csk (0.140746) | |
| nca (0.136874) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ova (0.129132) | |
| tra (0.123092) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| spc (0.113366) |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ret (0.7724) | |
| fcc (0.39557) | |
| sug (0.381874) | |
| bla (0.373042) | |
| sme (0.305437) | |
| fat (0.294855) | |
| ski (0.29347) | |
| liv (0.292569) | |
| pla (0.267344) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| sag (0.182715) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| rec (0.17307) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| lin (0.145603) | |
| spl (0.143184) | |
| csk (0.140746) | |
| nca (0.136874) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ova (0.129132) | |
| tra (0.123092) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| spc (0.113366) |