Ss1.1-Tra1-TCH01E110009.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCTATCCCAGCCTGCTCTGCGGCGCGGGGGCAAGATGGCTGCTGAGAAACAGGTTCCTG GAGGCGGAGGCGGCAGCAGCGGCGGCGGCGGTGGTGGCAGTAGCGGTGGTGGACGCGGTG CCGGAGGAGAGGAAAATAAGGAAAATGAACGGCCTTCAGCCGGGTCGAAGGCAAACAAAG AATTCGGGGATAGCCTGAGTTTGGAGATTCTTCAGATTATCAAGGAATCCCAGCAGCAGC ATGGTTTACGGCATGGAGATTTTCAGAGGTACAGAGGCTACTGTTCCCGGAGACAAAGAC GTCTTCGGAAAACACTCAACTTCAAGATGGGGAACAGACACAAGTTCACAGGGAAAAAAG TAACCGAGGATCTTCTGACTGATAACAGATATTTGCTTCTGGTTCTGATGGATGCTGAGA GAGCCTGGAGCTACGCCATGCAGCTCAAGCAGGAAGCCAACACTGAACCCCGAAAACGGT TCCACTTACTGTCTCGCCTCCGCAAAGCCGTGAAGCATGCCGAGGAGTTGGAACGCTTGT GTGAGAGCAATCGTGTGGACGCCAAGACCAAGCTGGAGGCTCAGGCTTACACGGCTTACC TCTCAGGAATGCTGCGGTTTGAACATCAGGAATGGAAAGCTGCCATTGAGGCTTTTAACA AATGCAAAACTATCTACGAGAAGCTGGCCAGTGCTTTCACAGAGGAGCAGGCCGTGCTCT ACAACCAGCGGGTGGAGGAGATCTCCCCCAACATCCGCTACTGCGCGTACAACATCGGGG ACCAGTCAGCTATCAATGAACTCATGCAGATGAGATTGAGGTCTGGGGGCACTGAGGGGC TCCTGGCTGAAAAATTGGAGGCGCTGATCACCCAGACTCGAGCCAAGCAGGCGGCCACCA TGAGCGAGGTGGAGTGGAGAGGCCGCGCGGTCCCGGTGAAGGTCGACAGAGTGAGGATCT TTTTACTGGGACTGGCCGACAACGAGGCGGCCATCGCCCAGGCTGAAAGCGAAGAAACCA AGGAGCGGCTGTTCGAGTCCATGCTCAGCGAGTGTCGGGACGCCATCCAGGCCGTTCGCG AAGAGCTCAAGCCAGACCAGAAACAGAGAGACTATCCCCTTGATGGCGAGTCGGGGAAGG TGTCTAATCTTCAGTACCTGCACAGCTACCTGACTTACATCAAGCTGTCGACAGCGATCA AGCGGAACGAGAACATGGCCAGAGGCCTGCAGAAGGCGCTGCTGCAGCAGCAGCCGGAAG ATGACGGCAAGCGCTCCCCCCGGCCCCAGGACCTGATCCGGCTCTATGACATCATCCTGC AGAATCTGGTGGAATTGCTCCAGCTTCCTGGCTTAGAAGAGGACAGAGCCTTCCAGAAAG AAATAGGCCTCAAAACTCTGGTGTACAAGGCTTACAGATGTTTCTTCATCGCTCAGTCCT ACGTGCTGGTGAAGAAGTGGAGCGAAGCCCTTGTCCTGTATGACAGGGTCCTGAAATATG CAGACGAAGTGAATTCTGATGCCGGCGCCTTCAAGAACAGCCTCAAGGACCTGCCTGACG TGCTGGAGCTCATCTCGCAAGTGAGGTCGGAAAAGTGCTGCCTGCAGGCGGCCGCCATCC TGGATACAAATGACCCCCAGCAAACGGAGACCTCGTCCCAAGTCAAGGACAACAAGCCCC TGGTGGAGCGGTTTGAGACCTTCTGCCTGGACCCTTCCCTCGTCACCAAGCAAGCCAACC TCGTGCACTTCCCGCCGGGATTCCAGCCCGTCCCCTGCAAGCCCCTCTTCTTTGACCTGG CCCTCAACCACGTGGCCTTCCCACCCCTGGAGGACAAGTTGGAGCAGAAGACCAAGAGCG GCCTCGCCGGATACATCAAGGGCATCTTTGGCTTCAGGAGCTAACCAGGCTCTTCCTGGG GGCAGGGGAGCCTGACGCTGGGTCTGTGTTGGGAGAAACGCCAGCAGGGTCCGTCTGTTA AATCCAGGTCTGCGTTGGCCCAGGGCGGGAGTGTGACAGGCTCAGCCCTGCGTTCCTGTG TCTCGTGCGGTGTACACTTCCATTCGTAACCATTGTGCTGGGGGGCGCCCTGTCGGCTTC TGTAAACGTTTGGGGTCCTCCCCAGACCTCCCGGGGCGGGGCCCCTGCGCCCGCGGTCAG TGACATGTTGGTGGGGAGCCCCGCCAGGCACGGATGGGGACTTGAATGTGTTGTCCTGTT GCTTCAGTACCATGGATGTGAAATGAACTCAGCCTTGCTGCGAGCGTCCAGGCCCCCTTG AGGAGTTTGCCCATGACTGGGAAACACTGCAGCGTCGCCCCAGAATTACAGTCAGCCTTA TTCCCCTCCCTCCAAGTGAAAGTGAAGACGTTTCCGAACAAGCAAAGAGCTCTATTTTTA GAAGAAATATGTTACCCTCAGAAATGATGAAAACAAATCTTATATTAAAAGGCAAAGATT TTGAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCTATCCCAGCCTGCTCTGCGGCGCGGGGGCAAGATGGCTGCTGAGAAACAGGTTCCTG GAGGCGGAGGCGGCAGCAGCGGCGGCGGCGGTGGTGGCAGTAGCGGTGGTGGACGCGGTG CCGGAGGAGAGGAAAATAAGGAAAATGAACGGCCTTCAGCCGGGTCGAAGGCAAACAAAG AATTCGGGGATAGCCTGAGTTTGGAGATTCTTCAGATTATCAAGGAATCCCAGCAGCAGC ATGGTTTACGGCATGGAGATTTTCAGAGGTACAGAGGCTACTGTTCCCGGAGACAAAGAC GTCTTCGGAAAACACTCAACTTCAAGATGGGGAACAGACACAAGTTCACAGGGAAAAAAG TAACCGAGGATCTTCTGACTGATAACAGATATTTGCTTCTGGTTCTGATGGATGCTGAGA GAGCCTGGAGCTACGCCATGCAGCTCAAGCAGGAAGCCAACACTGAACCCCGAAAACGGT TCCACTTACTGTCTCGCCTCCGCAAAGCCGTGAAGCATGCCGAGGAGTTGGAACGCTTGT GTGAGAGCAATCGTGTGGACGCCAAGACCAAGCTGGAGGCTCAGGCTTACACGGCTTACC TCTCAGGAATGCTGCGGTTTGAACATCAGGAATGGAAAGCTGCCATTGAGGCTTTTAACA AATGCAAAACTATCTACGAGAAGCTGGCCAGTGCTTTCACAGAGGAGCAGGCCGTGCTCT ACAACCAGCGGGTGGAGGAGATCTCCCCCAACATCCGCTACTGCGCGTACAACATCGGGG ACCAGTCAGCTATCAATGAACTCATGCAGATGAGATTGAGGTCTGGGGGCACTGAGGGGC TCCTGGCTGAAAAATTGGAGGCGCTGATCACCCAGACTCGAGCCAAGCAGGCGGCCACCA TGAGCGAGGTGGAGTGGAGAGGCCGCGCGGTCCCGGTGAAGGTCGACAGAGTGAGGATCT TTTTACTGGGACTGGCCGACAACGAGGCGGCCATCGCCCAGGCTGAAAGCGAAGAAACCA AGGAGCGGCTGTTCGAGTCCATGCTCAGCGAGTGTCGGGACGCCATCCAGGCCGTTCGCG AAGAGCTCAAGCCAGACCAGAAACAGAGAGACTATCCCCTTGATGGCGAGTCGGGGAAGG TGTCTAATCTTCAGTACCTGCACAGCTACCTGACTTACATCAAGCTGTCGACAGCGATCA AGCGGAACGAGAACATGGCCAGAGGCCTGCAGAAGGCGCTGCTGCAGCAGCAGCCGGAAG ATGACGGCAAGCGCTCCCCCCGGCCCCAGGACCTGATCCGGCTCTATGACATCATCCTGC AGAATCTGGTGGAATTGCTCCAGCTTCCTGGCTTAGAAGAGGACAGAGCCTTCCAGAAAG AAATAGGCCTCAAAACTCTGGTGTACAAGGCTTACAGATGTTTCTTCATCGCTCAGTCCT ACGTGCTGGTGAAGAAGTGGAGCGAAGCCCTTGTCCTGTATGACAGGGTCCTGAAATATG CAGACGAAGTGAATTCTGATGCCGGCGCCTTCAAGAACAGCCTCAAGGACCTGCCTGACG TGCTGGAGCTCATCTCGCAAGTGAGGTCGGAAAAGTGCTGCCTGCAGGCGGCCGCCATCC TGGATACAAATGACCCCCAGCAAACGGAGACCTCGTCCCAAGTCAAGGACAACAAGCCCC TGGTGGAGCGGTTTGAGACCTTCTGCCTGGACCCTTCCCTCGTCACCAAGCAAGCCAACC TCGTGCACTTCCCGCCGGGATTCCAGCCCGTCCCCTGCAAGCCCCTCTTCTTTGACCTGG CCCTCAACCACGTGGCCTTCCCACCCCTGGAGGACAAGTTGGAGCAGAAGACCAAGAGCG GCCTCGCCGGATACATCAAGGGCATCTTTGGCTTCAGGAGCTAACCAGGCTCTTCCTGGG GGCAGGGGAGCCTGACGCTGGGTCTGTGTTGGGAGAAACGCCAGCAGGGTCCGTCTGTTA AATCCAGGTCTGCGTTGGCCCAGGGCGGGAGTGTGACAGGCTCAGCCCTGCGTTCCTGTG TCTCGTGCGGTGTACACTTCCATTCGTAACCATTGTGCTGGGGGGCGCCCTGTCGGCTTC TGTAAACGTTTGGGGTCCTCCCCAGACCTCCCGGGGCGGGGCCCCTGCGCCCGCGGTCAG TGACATGTTGGTGGGGAGCCCCGCCAGGCACGGATGGGGACTTGAATGTGTTGTCCTGTT GCTTCAGTACCATGGATGTGAAATGAACTCAGCCTTGCTGCGAGCGTCCAGGCCCCCTTG AGGAGTTTGCCCATGACTGGGAAACACTGCAGCGTCGCCCCAGAATTACAGTCAGCCTTA TTCCCCTCCCTCCAAGTGAAAGTGAAGACGTTTCCGAACAAGCAAAGAGCTCTATTTTTA GAAGAAATATGTTACCCTCAGAAATGATGAAAACAAATCTTATATTAAAAGGCAAAGATT TTGAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1707-1826, - strand, RNAz p=0.659351 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1707-1826, - strand, RNAz p=0.659351 |
| Aligned organism(s): 64 entry(ies) | More info |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
| 1-207, gnl|bosTau2|chr19 (49519972-49520181) | |
| 1-207, gnl|Hg17|chr17 (71580202-71579984) | |
| 1-207, gnl|Mm7|chr11 (116383186-116382971) | |
| 387-585, gnl|bosTau2|chr19 (49527177-49527375) | |
| 387-585, gnl|canFam2|chr9 (7572727-7572502) | |
| 387-585, gnl|danRer3|chrUn (151424599-151424825) | |
| 387-585, gnl|dasNov1|scaffold_262040 (562-792) | |
| 387-585, gnl|echTel1|scaffold_323920 (45803-46039) | |
| 387-585, gnl|galGal2|chr18 (4356774-4356547) | |
| 387-585, gnl|hg17|chr17 (71571635-71571865) | |
| 387-585, gnl|Hg17|chr17 (71571849-71571651) | |
| 387-585, gnl|loxAfr1|scaffold_133383 (5054-5289) | |
| 387-585, gnl|mm7|chr11 (116374385-116374611) | |
| 387-585, gnl|Mm7|chr11 (116374599-116374401) | |
| 387-585, gnl|monDom2|scaffold_18 (33943544-33943797) | |
| 387-585, gnl|oryCun1|scaffold_165201 (10066-10295) | |
| 387-585, gnl|panTro1|chr19 (74931438-74931668) | |
| 387-585, gnl|rheMac2|chr16 (71401791-71402021) | |
| 387-585, gnl|rn3|chr10 (106392688-106392912) | |
| 387-585, gnl|tetNig1|chrUn_random (27216973-27216773) | |
| 387-585, gnl|xenTro1|scaffold_632 (753252-753464) | |
| 664-781, gnl|bosTau2|chr19 (49528297-49528414) | |
| 664-781, gnl|canFam2|chr9 (7575065-7574879) | |
| 664-781, gnl|danRer3|chrUn (151421966-151422149) | |
| 664-781, gnl|echTel1|scaffold_323920 (44387-44568) | |
| 664-781, gnl|fr1|chrUn (313799624-313799464) | |
| 664-781, gnl|hg17|chr17 (71568768-71568963) | |
| 664-781, gnl|Hg17|chr17 (71568899-71568782) | |
| 664-781, gnl|mm7|chr11 (116371897-116372093) | |
| 664-781, gnl|Mm7|chr11 (116372018-116371901) | |
| 664-781, gnl|monDom2|scaffold_18 (33942151-33942373) | |
| 664-781, gnl|oryCun1|scaffold_165201 (8359-8555) | |
| 664-781, gnl|panTro1|chr19 (74928358-74928553) | |
| 664-781, gnl|rheMac2|chr16 (71399219-71399414) | |
| 664-781, gnl|rn3|chr10 (106390627-106390831) | |
| 664-781, gnl|tetNig1|chrUn_random (27217330-27217167) | |
| 664-781, gnl|xenTro1|scaffold_632 (751557-751745) | |
| 859-1002, gnl|bosTau2|chr19 (49529153-49529296) | |
| 859-1002, gnl|canFam2|chr9 (7577469-7577287) | |
| 859-1002, gnl|danRer3|chrUn (151421256-151421413) | |
| 859-1002, gnl|dasNov1|scaffold_109528 (482-296) | |
| 859-1002, gnl|echTel1|scaffold_323920 (41567-41750) | |
| 859-1002, gnl|fr1|chrUn (313800663-313800484) | |
| 859-1002, gnl|galGal2|chr18 (4359083-4358895) | |
| 859-1002, gnl|hg17|chr17 (71565074-71565256) | |
| 859-1002, gnl|Hg17|chr17 (71565221-71565078) | |
| 859-1002, gnl|mm7|chr11 (116369834-116370012) | |
| 859-1002, gnl|Mm7|chr11 (116369981-116369838) | |
| 859-1002, gnl|monDom2|scaffold_18 (33941255-33941430) | |
| 859-1002, gnl|oryCun1|scaffold_165201 (6073-6255) | |
| 859-1002, gnl|panTro1|chr19 (74924660-74924842) | |
| 859-1002, gnl|rheMac2|chr16 (71395528-71395710) | |
| 859-1002, gnl|rn3|chr10 (106389288-106389461) | |
| 859-1002, gnl|tetNig1|chrUn_random (27217982-27217834) | |
| 859-1002, gnl|xenTro1|scaffold_632 (750663-750840) | |
| 1163-1322, gnl|bosTau2|chr19 (49539594-49539753) | |
| 1163-1322, gnl|Hg17|chr17 (71553873-71553714) | |
| 1163-1322, gnl|Mm7|chr11 (116359940-116359781) | |
| 1415-1548, gnl|bosTau2|chr19 (49541198-49541331) | |
| 1415-1548, gnl|Hg17|chr17 (71551637-71551504) | |
| 1415-1548, gnl|Mm7|chr11 (116356993-116356860) | |
| 1668-2459, gnl|bosTau2|chr19 (49543901-49544717) | |
| 1668-2459, gnl|Hg17|chr17 (71547618-71546787) | |
| 1668-2459, gnl|Mm7|chr11 (116354984-116354217) |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-207, gnl|bosTau2|chr19 (49519972-49520181) | |
| 1-207, gnl|Hg17|chr17 (71580202-71579984) | |
| 1-207, gnl|Mm7|chr11 (116383186-116382971) | |
| 387-585, gnl|bosTau2|chr19 (49527177-49527375) | |
| 387-585, gnl|canFam2|chr9 (7572727-7572502) | |
| 387-585, gnl|danRer3|chrUn (151424599-151424825) | |
| 387-585, gnl|dasNov1|scaffold_262040 (562-792) | |
| 387-585, gnl|echTel1|scaffold_323920 (45803-46039) | |
| 387-585, gnl|galGal2|chr18 (4356774-4356547) | |
| 387-585, gnl|hg17|chr17 (71571635-71571865) | |
| 387-585, gnl|Hg17|chr17 (71571849-71571651) | |
| 387-585, gnl|loxAfr1|scaffold_133383 (5054-5289) | |
| 387-585, gnl|mm7|chr11 (116374385-116374611) | |
| 387-585, gnl|Mm7|chr11 (116374599-116374401) | |
| 387-585, gnl|monDom2|scaffold_18 (33943544-33943797) | |
| 387-585, gnl|oryCun1|scaffold_165201 (10066-10295) | |
| 387-585, gnl|panTro1|chr19 (74931438-74931668) | |
| 387-585, gnl|rheMac2|chr16 (71401791-71402021) | |
| 387-585, gnl|rn3|chr10 (106392688-106392912) | |
| 387-585, gnl|tetNig1|chrUn_random (27216973-27216773) | |
| 387-585, gnl|xenTro1|scaffold_632 (753252-753464) | |
| 664-781, gnl|bosTau2|chr19 (49528297-49528414) | |
| 664-781, gnl|canFam2|chr9 (7575065-7574879) | |
| 664-781, gnl|danRer3|chrUn (151421966-151422149) | |
| 664-781, gnl|echTel1|scaffold_323920 (44387-44568) | |
| 664-781, gnl|fr1|chrUn (313799624-313799464) | |
| 664-781, gnl|hg17|chr17 (71568768-71568963) | |
| 664-781, gnl|Hg17|chr17 (71568899-71568782) | |
| 664-781, gnl|mm7|chr11 (116371897-116372093) | |
| 664-781, gnl|Mm7|chr11 (116372018-116371901) | |
| 664-781, gnl|monDom2|scaffold_18 (33942151-33942373) | |
| 664-781, gnl|oryCun1|scaffold_165201 (8359-8555) | |
| 664-781, gnl|panTro1|chr19 (74928358-74928553) | |
| 664-781, gnl|rheMac2|chr16 (71399219-71399414) | |
| 664-781, gnl|rn3|chr10 (106390627-106390831) | |
| 664-781, gnl|tetNig1|chrUn_random (27217330-27217167) | |
| 664-781, gnl|xenTro1|scaffold_632 (751557-751745) | |
| 859-1002, gnl|bosTau2|chr19 (49529153-49529296) | |
| 859-1002, gnl|canFam2|chr9 (7577469-7577287) | |
| 859-1002, gnl|danRer3|chrUn (151421256-151421413) | |
| 859-1002, gnl|dasNov1|scaffold_109528 (482-296) | |
| 859-1002, gnl|echTel1|scaffold_323920 (41567-41750) | |
| 859-1002, gnl|fr1|chrUn (313800663-313800484) | |
| 859-1002, gnl|galGal2|chr18 (4359083-4358895) | |
| 859-1002, gnl|hg17|chr17 (71565074-71565256) | |
| 859-1002, gnl|Hg17|chr17 (71565221-71565078) | |
| 859-1002, gnl|mm7|chr11 (116369834-116370012) | |
| 859-1002, gnl|Mm7|chr11 (116369981-116369838) | |
| 859-1002, gnl|monDom2|scaffold_18 (33941255-33941430) | |
| 859-1002, gnl|oryCun1|scaffold_165201 (6073-6255) | |
| 859-1002, gnl|panTro1|chr19 (74924660-74924842) | |
| 859-1002, gnl|rheMac2|chr16 (71395528-71395710) | |
| 859-1002, gnl|rn3|chr10 (106389288-106389461) | |
| 859-1002, gnl|tetNig1|chrUn_random (27217982-27217834) | |
| 859-1002, gnl|xenTro1|scaffold_632 (750663-750840) | |
| 1163-1322, gnl|bosTau2|chr19 (49539594-49539753) | |
| 1163-1322, gnl|Hg17|chr17 (71553873-71553714) | |
| 1163-1322, gnl|Mm7|chr11 (116359940-116359781) | |
| 1415-1548, gnl|bosTau2|chr19 (49541198-49541331) | |
| 1415-1548, gnl|Hg17|chr17 (71551637-71551504) | |
| 1415-1548, gnl|Mm7|chr11 (116356993-116356860) | |
| 1668-2459, gnl|bosTau2|chr19 (49543901-49544717) | |
| 1668-2459, gnl|Hg17|chr17 (71547618-71546787) | |
| 1668-2459, gnl|Mm7|chr11 (116354984-116354217) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| cga (0.279096) | |
| eep (0.245128) | |
| col (0.195008) | |
| nep (0.183925) | |
| ill (0.175593) | |
| ton (0.1755) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| ute (0.132784) | |
| thg (0.126791) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cga (0.279096) | |
| eep (0.245128) | |
| col (0.195008) | |
| nep (0.183925) | |
| ill (0.175593) | |
| ton (0.1755) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| ute (0.132784) | |
| thg (0.126791) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| jej (0.0989218) |