Ss1.1-Tra1-TCH01E120030.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACCAGCGACCGACGCCATATTAAGGAGCGCGGAGCTCTGGCTCCCGTCAGCGGCGTCC GCGGCTGGACGCGGCGGAACTGCGTGCAGCGGAGGCGAGCGCTGCACGGCGCCAGGAGAG GCGGGGCCGCTAGAGTCAGTGGGCGACGGAAGCGGCGAGCCAGGCTGACATTGGCTAGCT GACTGTGGCTGGCGGGCTGTGCCTGCCCTGCCCCGCCATGGACCAGGACTACGAGCGGCG CCTCCTGCGGCAGATCATCATCCAGAATGAGAATACAATGCCATGTGTTGCGGAGATGCG GCGAACCCTGACACCTGCCAACTCCCCCGTGTCCTCCCCCAGCAAGCACGGAGACCGCTT CATCCCCTCAAGAGCCGGCGCCAACTGGAGCGTGAATTTCCACAGGATCAATGAAAATGA GAAATCTCCCAGCCAAAACCGGAAAGCGAAGGATGCCACCTCAGACAATGGCAAAGATGG CTTGGCCTACTCGGCTTTGCTGAAGAACGAGCTGCTCGGTGCTGGCATCGAGAAGGTACA GGACCCGCAGACTGAGGACCGCAGGCTGCAGCCCTCCACACCTGAGAGGAAGGGCCTCTT CACGTATTCCCTCAGCACCAAGCGTTCCAGCCCCGACGACGGCAATGATGTGTCTCCCTA TTCCCTGTCCCCCGTTAGCAACAAAAGTCAGAAGTTACTGCGGTCGCCACGGAAACCCAC CCGCAAGATCTCCAAGATCCCCTTCAAGGTCCTGGACGCGCCTGAGCTGCAGGATGACTT CTACCTGAACCTGGTGGACTGGTCATCCCTCAACGTGCTCAGTGTGGGGCTGGGGACCTG CGTATACCTGTGGAGCGCTTGTACCAGCCAGGTGACCCGGCTCTGTGACCTCTCCGTGGA AGGGGACTCGGTGACTTCTGTGGGCTGGTCTGAGAGGGGGAACCTGGTGGCTGTGGGCAC ACACAAGGGCTTTGTGCAAATCTGGGACGCAGCCGCAGGAAAAAAGCTGTCCATGCTGGA AGGCCACACGGCGCGTGTCGGGGCGCTGGCCTGGAATGCTGATCAGCTCTCGTCCGGGAG CCGGGACCGCATGATCCTACAGAGGGACATCCGCACCCCACCCCTGCAGTCAGAGCGGCG GCTACAGGGCCACCGGCAGGAGGTGTGTGGGCTCAAGTGGTCCACGGACCACCAGCTCCT CGCCTCCGGGGGCAACGACAACAAGCTGCTGGTCTGGAACCACTCAAGCCTGAGCCCCGT GCAGCAGTACACAGAGCACCTGGCAGCTGTGAAGGCCATTGCCTGGTCCCCACACCAGCA TGGGCTGCTGGCATCCGGCGGTGGTACAGCTGACCGCTGCATCCGCTTCTGGAACACACT CACGGGGCAGCCGCTACAGTGCATCGACACTGGCTCCCAGGTGTGCAACCTCGCCTGGTC CAAGCACGCTAACGAGCTGGTGAGCACGCATGGCTACTCGCAGAACCAGATCCTGGTCTG GAAGTACCCATCCCTGACCCAGGTGGCTAAGTTGACTGGGCACTCCTACCGGGTGCTGTA CCTGGCCATGTCCCCCGATGGAGAGGCCATAGTCAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACCAGCGACCGACGCCATATTAAGGAGCGCGGAGCTCTGGCTCCCGTCAGCGGCGTCC GCGGCTGGACGCGGCGGAACTGCGTGCAGCGGAGGCGAGCGCTGCACGGCGCCAGGAGAG GCGGGGCCGCTAGAGTCAGTGGGCGACGGAAGCGGCGAGCCAGGCTGACATTGGCTAGCT GACTGTGGCTGGCGGGCTGTGCCTGCCCTGCCCCGCCATGGACCAGGACTACGAGCGGCG CCTCCTGCGGCAGATCATCATCCAGAATGAGAATACAATGCCATGTGTTGCGGAGATGCG GCGAACCCTGACACCTGCCAACTCCCCCGTGTCCTCCCCCAGCAAGCACGGAGACCGCTT CATCCCCTCAAGAGCCGGCGCCAACTGGAGCGTGAATTTCCACAGGATCAATGAAAATGA GAAATCTCCCAGCCAAAACCGGAAAGCGAAGGATGCCACCTCAGACAATGGCAAAGATGG CTTGGCCTACTCGGCTTTGCTGAAGAACGAGCTGCTCGGTGCTGGCATCGAGAAGGTACA GGACCCGCAGACTGAGGACCGCAGGCTGCAGCCCTCCACACCTGAGAGGAAGGGCCTCTT CACGTATTCCCTCAGCACCAAGCGTTCCAGCCCCGACGACGGCAATGATGTGTCTCCCTA TTCCCTGTCCCCCGTTAGCAACAAAAGTCAGAAGTTACTGCGGTCGCCACGGAAACCCAC CCGCAAGATCTCCAAGATCCCCTTCAAGGTCCTGGACGCGCCTGAGCTGCAGGATGACTT CTACCTGAACCTGGTGGACTGGTCATCCCTCAACGTGCTCAGTGTGGGGCTGGGGACCTG CGTATACCTGTGGAGCGCTTGTACCAGCCAGGTGACCCGGCTCTGTGACCTCTCCGTGGA AGGGGACTCGGTGACTTCTGTGGGCTGGTCTGAGAGGGGGAACCTGGTGGCTGTGGGCAC ACACAAGGGCTTTGTGCAAATCTGGGACGCAGCCGCAGGAAAAAAGCTGTCCATGCTGGA AGGCCACACGGCGCGTGTCGGGGCGCTGGCCTGGAATGCTGATCAGCTCTCGTCCGGGAG CCGGGACCGCATGATCCTACAGAGGGACATCCGCACCCCACCCCTGCAGTCAGAGCGGCG GCTACAGGGCCACCGGCAGGAGGTGTGTGGGCTCAAGTGGTCCACGGACCACCAGCTCCT CGCCTCCGGGGGCAACGACAACAAGCTGCTGGTCTGGAACCACTCAAGCCTGAGCCCCGT GCAGCAGTACACAGAGCACCTGGCAGCTGTGAAGGCCATTGCCTGGTCCCCACACCAGCA TGGGCTGCTGGCATCCGGCGGTGGTACAGCTGACCGCTGCATCCGCTTCTGGAACACACT CACGGGGCAGCCGCTACAGTGCATCGACACTGGCTCCCAGGTGTGCAACCTCGCCTGGTC CAAGCACGCTAACGAGCTGGTGAGCACGCATGGCTACTCGCAGAACCAGATCCTGGTCTG GAAGTACCCATCCCTGACCCAGGTGGCTAAGTTGACTGGGCACTCCTACCGGGTGCTGTA CCTGGCCATGTCCCCCGATGGAGAGGCCATAGTCAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 725-844, + strand, RNAz p=0.704062 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 725-844, + strand, RNAz p=0.704062 |
| Aligned organism(s): 95 entry(ies) | More info |
| Aligned organism(s): 95 entry(ies) | Help | Less info |
| 1-154, gnl|bosTau2|chr7 (16293094-16293248) | |
| 1-154, gnl|hg17|chr19 (3457024-3457596) | |
| 1-154, gnl|Hg17|chr19 (3457312-3457466) | |
| 1-154, gnl|loxAfr1|scaffold_30755 (21344-21981) | |
| 1-154, gnl|mm7|chr10 (81170908-81170142) | |
| 1-154, gnl|Mm7|chr10 (81170431-81170273) | |
| 1-154, gnl|monDom2|scaffold_122 (1360664-1360133) | |
| 1-154, gnl|panTro1|chr20 (3684344-3684917) | |
| 1-154, gnl|rheMac2|chr19 (3343114-3343665) | |
| 1-154, gnl|rn3|chr7 (9816034-9816804) | |
| 287-411, gnl|bosTau2|chr7 (16305869-16305993) | |
| 287-411, gnl|canFam2|chr20 (58939790-58939648) | |
| 287-411, gnl|danRer3|chr8 (11360327-11360212) | |
| 287-411, gnl|dasNov1|scaffold_289036 (165-302) | |
| 287-411, gnl|echTel1|scaffold_223878 (3694-3576) | |
| 287-411, gnl|fr1|chrUn (192173743-192173610) | |
| 287-411, gnl|galGal2|chrUn (155824826-155824965) | |
| 287-411, gnl|hg17|chr19 (3476859-3477001) | |
| 287-411, gnl|Hg17|chr19 (3476866-3476990) | |
| 287-411, gnl|mm7|chr10 (81163226-81163084) | |
| 287-411, gnl|Mm7|chr10 (81163217-81163093) | |
| 287-411, gnl|monDom2|scaffold_122 (1324286-1324147) | |
| 287-411, gnl|oryCun1|scaffold_91115 (206-332) | |
| 287-411, gnl|panTro1|chr20 (3703988-3704130) | |
| 287-411, gnl|rheMac2|chr19 (3364676-3364818) | |
| 287-411, gnl|rn3|chr7 (9823821-9823963) | |
| 287-411, gnl|tetNig1|chr15 (4754100-4754234) | |
| 472-604, gnl|bosTau2|chr7 (16306226-16306358) | |
| 472-604, gnl|canFam2|chr20 (58939445-58939283) | |
| 472-604, gnl|danRer3|chr7 (24000934-24000798) | |
| 472-604, gnl|dasNov1|scaffold_289036 (1062-1173) | |
| 472-604, gnl|echTel1|scaffold_223878 (3360-3198) | |
| 472-604, gnl|fr1|chrUn (192173087-192172934) | |
| 472-604, gnl|galGal2|chrUn (155825662-155825826) | |
| 472-604, gnl|hg17|chr19 (3477234-3477397) | |
| 472-604, gnl|Hg17|chr19 (3477252-3477384) | |
| 472-604, gnl|mm7|chr10 (81162888-81162683) | |
| 472-604, gnl|Mm7|chr10 (81162859-81162694) | |
| 472-604, gnl|monDom2|scaffold_122 (1323548-1323368) | |
| 472-604, gnl|oryCun1|scaffold_91115 (378-508) | |
| 472-604, gnl|panTro1|chr20 (3704364-3704527) | |
| 472-604, gnl|rheMac2|chr19 (3365051-3365224) | |
| 472-604, gnl|rn3|chr7 (9824162-9824361) | |
| 472-604, gnl|tetNig1|chr15 (4754573-4754729) | |
| 472-604, gnl|xenTro1|scaffold_273 (155343-155182) | |
| 686-874, gnl|bosTau2|chr7 (16307103-16307291) | |
| 686-874, gnl|canFam2|chr20 (58938293-58938081) | |
| 686-874, gnl|danRer3|chr8 (12487859-12487666) | |
| 686-874, gnl|echTel1|scaffold_223878 (2727-2524) | |
| 686-874, gnl|fr1|chrUn (192172695-192172495) | |
| 686-874, gnl|galGal2|chrUn (155826746-155826942) | |
| 686-874, gnl|hg17|chr19 (3478617-3478823) | |
| 686-874, gnl|Hg17|chr19 (3478627-3478815) | |
| 686-874, gnl|mm7|chr10 (81162392-81162188) | |
| 686-874, gnl|Mm7|chr10 (81162380-81162192) | |
| 686-874, gnl|monDom2|scaffold_122 (1313390-1313193) | |
| 686-874, gnl|oryCun1|scaffold_91115 (591-765) | |
| 686-874, gnl|panTro1|chr20 (3705713-3705919) | |
| 686-874, gnl|rheMac2|chr19 (3366380-3366586) | |
| 686-874, gnl|rn3|chr7 (9824675-9824869) | |
| 686-874, gnl|tetNig1|chr15 (4754945-4755139) | |
| 686-874, gnl|xenTro1|scaffold_273 (154797-154594) | |
| 937-1041, gnl|bosTau2|chr7 (16308387-16308491) | |
| 937-1041, gnl|canFam2|chr20 (58936949-58936835) | |
| 937-1041, gnl|danRer3|chr8 (12487378-12487268) | |
| 937-1041, gnl|dasNov1|scaffold_251566 (3986-3872) | |
| 937-1041, gnl|fr1|chrUn (192172241-192172127) | |
| 937-1041, gnl|galGal2|chrUn (155827628-155827742) | |
| 937-1041, gnl|hg17|chr19 (3482710-3482824) | |
| 937-1041, gnl|Hg17|chr19 (3482711-3482815) | |
| 937-1041, gnl|mm7|chr10 (81161441-81161327) | |
| 937-1041, gnl|Mm7|chr10 (81161438-81161334) | |
| 937-1041, gnl|monDom2|scaffold_122 (1310887-1310773) | |
| 937-1041, gnl|oryCun1|scaffold_91115 (835-940) | |
| 937-1041, gnl|rheMac2|chr19 (3369005-3369119) | |
| 937-1041, gnl|rn3|chr7 (9826630-9826744) | |
| 937-1041, gnl|tetNig1|chr15 (4755354-4755475) | |
| 937-1041, gnl|xenTro1|scaffold_273 (128770-128660) | |
| 1224-1464, gnl|bosTau2|chr7 (16308851-16309091) | |
| 1224-1464, gnl|canFam2|chr20 (58936464-58936299) | |
| 1224-1464, gnl|danRer3|chr8 (12485217-12485048) | |
| 1224-1464, gnl|dasNov1|scaffold_251566 (3547-3381) | |
| 1224-1464, gnl|echTel1|scaffold_223878 (453-288) | |
| 1224-1464, gnl|fr1|chrUn (192171764-192171601) | |
| 1224-1464, gnl|galGal2|chrUn (155829311-155829476) | |
| 1224-1464, gnl|hg17|chr19 (3483408-3483573) | |
| 1224-1464, gnl|Hg17|chr19 (3483413-3483653) | |
| 1224-1464, gnl|mm7|chr10 (81160762-81160597) | |
| 1224-1464, gnl|Mm7|chr10 (81160755-81160515) | |
| 1224-1464, gnl|monDom2|scaffold_122 (1305614-1305449) | |
| 1224-1464, gnl|oryCun1|scaffold_91115 (1105-1256) | |
| 1224-1464, gnl|rheMac2|chr19 (3369698-3369863) | |
| 1224-1464, gnl|rn3|chr7 (9827248-9827413) | |
| 1224-1464, gnl|tetNig1|chr15 (4755849-4756012) | |
| 1224-1464, gnl|xenTro1|scaffold_273 (125695-125530) |
| Aligned organism(s): 95 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-154, gnl|bosTau2|chr7 (16293094-16293248) | |
| 1-154, gnl|hg17|chr19 (3457024-3457596) | |
| 1-154, gnl|Hg17|chr19 (3457312-3457466) | |
| 1-154, gnl|loxAfr1|scaffold_30755 (21344-21981) | |
| 1-154, gnl|mm7|chr10 (81170908-81170142) | |
| 1-154, gnl|Mm7|chr10 (81170431-81170273) | |
| 1-154, gnl|monDom2|scaffold_122 (1360664-1360133) | |
| 1-154, gnl|panTro1|chr20 (3684344-3684917) | |
| 1-154, gnl|rheMac2|chr19 (3343114-3343665) | |
| 1-154, gnl|rn3|chr7 (9816034-9816804) | |
| 287-411, gnl|bosTau2|chr7 (16305869-16305993) | |
| 287-411, gnl|canFam2|chr20 (58939790-58939648) | |
| 287-411, gnl|danRer3|chr8 (11360327-11360212) | |
| 287-411, gnl|dasNov1|scaffold_289036 (165-302) | |
| 287-411, gnl|echTel1|scaffold_223878 (3694-3576) | |
| 287-411, gnl|fr1|chrUn (192173743-192173610) | |
| 287-411, gnl|galGal2|chrUn (155824826-155824965) | |
| 287-411, gnl|hg17|chr19 (3476859-3477001) | |
| 287-411, gnl|Hg17|chr19 (3476866-3476990) | |
| 287-411, gnl|mm7|chr10 (81163226-81163084) | |
| 287-411, gnl|Mm7|chr10 (81163217-81163093) | |
| 287-411, gnl|monDom2|scaffold_122 (1324286-1324147) | |
| 287-411, gnl|oryCun1|scaffold_91115 (206-332) | |
| 287-411, gnl|panTro1|chr20 (3703988-3704130) | |
| 287-411, gnl|rheMac2|chr19 (3364676-3364818) | |
| 287-411, gnl|rn3|chr7 (9823821-9823963) | |
| 287-411, gnl|tetNig1|chr15 (4754100-4754234) | |
| 472-604, gnl|bosTau2|chr7 (16306226-16306358) | |
| 472-604, gnl|canFam2|chr20 (58939445-58939283) | |
| 472-604, gnl|danRer3|chr7 (24000934-24000798) | |
| 472-604, gnl|dasNov1|scaffold_289036 (1062-1173) | |
| 472-604, gnl|echTel1|scaffold_223878 (3360-3198) | |
| 472-604, gnl|fr1|chrUn (192173087-192172934) | |
| 472-604, gnl|galGal2|chrUn (155825662-155825826) | |
| 472-604, gnl|hg17|chr19 (3477234-3477397) | |
| 472-604, gnl|Hg17|chr19 (3477252-3477384) | |
| 472-604, gnl|mm7|chr10 (81162888-81162683) | |
| 472-604, gnl|Mm7|chr10 (81162859-81162694) | |
| 472-604, gnl|monDom2|scaffold_122 (1323548-1323368) | |
| 472-604, gnl|oryCun1|scaffold_91115 (378-508) | |
| 472-604, gnl|panTro1|chr20 (3704364-3704527) | |
| 472-604, gnl|rheMac2|chr19 (3365051-3365224) | |
| 472-604, gnl|rn3|chr7 (9824162-9824361) | |
| 472-604, gnl|tetNig1|chr15 (4754573-4754729) | |
| 472-604, gnl|xenTro1|scaffold_273 (155343-155182) | |
| 686-874, gnl|bosTau2|chr7 (16307103-16307291) | |
| 686-874, gnl|canFam2|chr20 (58938293-58938081) | |
| 686-874, gnl|danRer3|chr8 (12487859-12487666) | |
| 686-874, gnl|echTel1|scaffold_223878 (2727-2524) | |
| 686-874, gnl|fr1|chrUn (192172695-192172495) | |
| 686-874, gnl|galGal2|chrUn (155826746-155826942) | |
| 686-874, gnl|hg17|chr19 (3478617-3478823) | |
| 686-874, gnl|Hg17|chr19 (3478627-3478815) | |
| 686-874, gnl|mm7|chr10 (81162392-81162188) | |
| 686-874, gnl|Mm7|chr10 (81162380-81162192) | |
| 686-874, gnl|monDom2|scaffold_122 (1313390-1313193) | |
| 686-874, gnl|oryCun1|scaffold_91115 (591-765) | |
| 686-874, gnl|panTro1|chr20 (3705713-3705919) | |
| 686-874, gnl|rheMac2|chr19 (3366380-3366586) | |
| 686-874, gnl|rn3|chr7 (9824675-9824869) | |
| 686-874, gnl|tetNig1|chr15 (4754945-4755139) | |
| 686-874, gnl|xenTro1|scaffold_273 (154797-154594) | |
| 937-1041, gnl|bosTau2|chr7 (16308387-16308491) | |
| 937-1041, gnl|canFam2|chr20 (58936949-58936835) | |
| 937-1041, gnl|danRer3|chr8 (12487378-12487268) | |
| 937-1041, gnl|dasNov1|scaffold_251566 (3986-3872) | |
| 937-1041, gnl|fr1|chrUn (192172241-192172127) | |
| 937-1041, gnl|galGal2|chrUn (155827628-155827742) | |
| 937-1041, gnl|hg17|chr19 (3482710-3482824) | |
| 937-1041, gnl|Hg17|chr19 (3482711-3482815) | |
| 937-1041, gnl|mm7|chr10 (81161441-81161327) | |
| 937-1041, gnl|Mm7|chr10 (81161438-81161334) | |
| 937-1041, gnl|monDom2|scaffold_122 (1310887-1310773) | |
| 937-1041, gnl|oryCun1|scaffold_91115 (835-940) | |
| 937-1041, gnl|rheMac2|chr19 (3369005-3369119) | |
| 937-1041, gnl|rn3|chr7 (9826630-9826744) | |
| 937-1041, gnl|tetNig1|chr15 (4755354-4755475) | |
| 937-1041, gnl|xenTro1|scaffold_273 (128770-128660) | |
| 1224-1464, gnl|bosTau2|chr7 (16308851-16309091) | |
| 1224-1464, gnl|canFam2|chr20 (58936464-58936299) | |
| 1224-1464, gnl|danRer3|chr8 (12485217-12485048) | |
| 1224-1464, gnl|dasNov1|scaffold_251566 (3547-3381) | |
| 1224-1464, gnl|echTel1|scaffold_223878 (453-288) | |
| 1224-1464, gnl|fr1|chrUn (192171764-192171601) | |
| 1224-1464, gnl|galGal2|chrUn (155829311-155829476) | |
| 1224-1464, gnl|hg17|chr19 (3483408-3483573) | |
| 1224-1464, gnl|Hg17|chr19 (3483413-3483653) | |
| 1224-1464, gnl|mm7|chr10 (81160762-81160597) | |
| 1224-1464, gnl|Mm7|chr10 (81160755-81160515) | |
| 1224-1464, gnl|monDom2|scaffold_122 (1305614-1305449) | |
| 1224-1464, gnl|oryCun1|scaffold_91115 (1105-1256) | |
| 1224-1464, gnl|rheMac2|chr19 (3369698-3369863) | |
| 1224-1464, gnl|rn3|chr7 (9827248-9827413) | |
| 1224-1464, gnl|tetNig1|chr15 (4755849-4756012) | |
| 1224-1464, gnl|xenTro1|scaffold_273 (125695-125530) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.41632) | |
| hyp (0.142837) | |
| che (0.136314) |