Ss1.1-Tra1-TCH01E120084.5
|
CACGGTGTCTTTGGTATTGGGCTGGCCCTGGCGGAGGCGCCAGGCGCCGCCGTGAGCCTC
ACCTCTGCTTGCCCTTTCACACCACGCCGCAGGCACTCAGGCTGAGCTTTCCTGAGGCTG
CATTGAGTTAGGGTGGACTCCCACCCCGCCTGAGTGACCAAGTAGTTTCCATTCCCACTC
CCAAATCCACCCCGCCGCTGCAGGTCCCATCAGCACCGAAGCTTTGGGCCTGCCGGCAGC
CTGGGTCCTCTGCGAGTGAAAAAGAGAGCCAGGCTGGGTCGTCAGGCGTCACTGAACTGT
TAGGTAACCATGAGTCCGCAATCAGAGTTTTTTGTAAATTTCAGTTTTCCTCACCTCTTC
ATGTACTCTTTCCTGAGCGCTCCAAAAGGGCACAGGTTTTATTGACAGGCTGTCAGTCAT
TTAGCTTCTTCAAAGGCTGATCATATTCACCTCGGAACTGTGCTAGGTGGCGTCTTGGGG
TCTCTTGTAATCAGCTTCAATGATACTGCAAGCTCAGTTGCAGAAGGAGGCAGCTGGCAA
GGGGAATCAAATTAAGAAAATTGTTCCAGGAAGAAAAGGTTTAATTAAGGAAAAGGGAGC
AAGAGGGCAAAGCACATAGGATTCAAATTTGAATACCGAGTGGTGTGCACTGGCACATTG
ATCCTTTCAGGTATTTATCAAGCATTTATTAAGCCTGTCTTCAAGCAAAAACGCTATGCT
AGATGATGTAGTACAAAATGACTAGGTGATATGCAAGGCGAGAGGAAGGCCTGTCAACTT
TTCTTTTTTTTTTGCTTTTTAGGGCCGCACTTGTGGCACACGAAGTTCTCAGACTAGGGG
TCAAATCGGAACTGTAGCTGCCACAGCCACAGCAATGCCAGATTCAAGCCATGTCTGTGA
CCTACACCACAGCTCATAGCAATGCTGGATCCTTAACTCACTGAGCCAGACCAGGGATCA
AACCCTCATCCTCGTGGGTACTAGTCAGGTCCACTACCACTGAGCCACGATGGGAACTCC
TCATTAACTTTTTGGAGCCCCTGCTAAATGAAAGGTGGAAACAACCCAAACATCCATCTG
CTGATGAATGGACCCATAAAATGTGGTAAATCCACTACGTGCCTTGCCGGCATCCTCTTG
CGAACCTTCAGTACACCTGTGTGAGGCACATAATGTCCTTTTACAGAAGAAAGCAAGATT
CAAAAAATATTGAGGATCTAATTTTACAAGAGTAAAGGATCTTAACAGACTTTTCTCCAA
AGAAGACATAGACATGGCCGTAAGCACACGAAAAGA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CACGGTGTCTTTGGTATTGGGCTGGCCCTGGCGGAGGCGCCAGGCGCCGCCGTGAGCCTC
ACCTCTGCTTGCCCTTTCACACCACGCCGCAGGCACTCAGGCTGAGCTTTCCTGAGGCTG
CATTGAGTTAGGGTGGACTCCCACCCCGCCTGAGTGACCAAGTAGTTTCCATTCCCACTC
CCAAATCCACCCCGCCGCTGCAGGTCCCATCAGCACCGAAGCTTTGGGCCTGCCGGCAGC
CTGGGTCCTCTGCGAGTGAAAAAGAGAGCCAGGCTGGGTCGTCAGGCGTCACTGAACTGT
TAGGTAACCATGAGTCCGCAATCAGAGTTTTTTGTAAATTTCAGTTTTCCTCACCTCTTC
ATGTACTCTTTCCTGAGCGCTCCAAAAGGGCACAGGTTTTATTGACAGGCTGTCAGTCAT
TTAGCTTCTTCAAAGGCTGATCATATTCACCTCGGAACTGTGCTAGGTGGCGTCTTGGGG
TCTCTTGTAATCAGCTTCAATGATACTGCAAGCTCAGTTGCAGAAGGAGGCAGCTGGCAA
GGGGAATCAAATTAAGAAAATTGTTCCAGGAAGAAAAGGTTTAATTAAGGAAAAGGGAGC
AAGAGGGCAAAGCACATAGGATTCAAATTTGAATACCGAGTGGTGTGCACTGGCACATTG
ATCCTTTCAGGTATTTATCAAGCATTTATTAAGCCTGTCTTCAAGCAAAAACGCTATGCT
AGATGATGTAGTACAAAATGACTAGGTGATATGCAAGGCGAGAGGAAGGCCTGTCAACTT
TTCTTTTTTTTTTGCTTTTTAGGGCCGCACTTGTGGCACACGAAGTTCTCAGACTAGGGG
TCAAATCGGAACTGTAGCTGCCACAGCCACAGCAATGCCAGATTCAAGCCATGTCTGTGA
CCTACACCACAGCTCATAGCAATGCTGGATCCTTAACTCACTGAGCCAGACCAGGGATCA
AACCCTCATCCTCGTGGGTACTAGTCAGGTCCACTACCACTGAGCCACGATGGGAACTCC
TCATTAACTTTTTGGAGCCCCTGCTAAATGAAAGGTGGAAACAACCCAAACATCCATCTG
CTGATGAATGGACCCATAAAATGTGGTAAATCCACTACGTGCCTTGCCGGCATCCTCTTG
CGAACCTTCAGTACACCTGTGTGAGGCACATAATGTCCTTTTACAGAAGAAAGCAAGATT
CAAAAAATATTGAGGATCTAATTTTACAAGAGTAAAGGATCTTAACAGACTTTTCTCCAA
AGAAGACATAGACATGGCCGTAAGCACACGAAAAGA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
59-783, gnl|bosTau2|chr19 (49954887-49955662) |
|
59-783, gnl|canFam2|chr9 (7077382-7076807) |
|
59-783, gnl|echTel1|scaffold_179402 (6420-6921) |
|
59-783, gnl|hg17|chr17 (72178163-72178717) |
|
59-783, gnl|Hg17|chr17 (72178953-72178197) |
|
59-783, gnl|loxAfr1|scaffold_5472 (34534-35096) |
|
59-783, gnl|mm7|chr11 (116906162-116906658) |
|
59-783, gnl|oryCun1|scaffold_128049 (6952-7399) |
|
59-783, gnl|panTro1|chr19 (75548246-75548800) |
|
59-783, gnl|rheMac2|chr16 (72028789-72029337) |
|
59-783, gnl|rn3|chr10 (106912509-106912970) |
| |
|
1114-1274, gnl|bosTau2|chr19 (49955685-49955845) |
|
1114-1274, gnl|Hg17|chr17 (72178162-72178000) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
59-783, gnl|bosTau2|chr19 (49954887-49955662) |
|
59-783, gnl|canFam2|chr9 (7077382-7076807) |
|
59-783, gnl|echTel1|scaffold_179402 (6420-6921) |
|
59-783, gnl|hg17|chr17 (72178163-72178717) |
|
59-783, gnl|Hg17|chr17 (72178953-72178197) |
|
59-783, gnl|loxAfr1|scaffold_5472 (34534-35096) |
|
59-783, gnl|mm7|chr11 (116906162-116906658) |
|
59-783, gnl|oryCun1|scaffold_128049 (6952-7399) |
|
59-783, gnl|panTro1|chr19 (75548246-75548800) |
|
59-783, gnl|rheMac2|chr16 (72028789-72029337) |
|
59-783, gnl|rn3|chr10 (106912509-106912970) |
| |
|
1114-1274, gnl|bosTau2|chr19 (49955685-49955845) |
|
1114-1274, gnl|Hg17|chr17 (72178162-72178000) |
|
spl (0.143184) |
|
che (0.136314) |
|
eru (0.120048) |
|
cty (0.10408) |
|
spl (0.143184) |
|
che (0.136314) |
|
eru (0.120048) |
|
cty (0.10408) |
