Non-Coding RNA Search

Ss1.1-Tra1-TCH01F010099.5

Sequence:


               
               CAGCCGGACCCCAGCCTCGGACAGGTTCTGGCGCCCTGCTCGTCCAGTGCTCTGCCGGCC
CCCGCCCAGCGCCCCGGCCCTTCCATGTCACCCGCTCACTCTCTCCGTCGTTCCGACGCC
ATGGACACCTTTTGGTGGCGCGCAGCTTGGGGACTCTGCCTCGTGCAGCTGAGCCTGGCG
CAGATCGATCTGAATATAACCTGCCGATACGCAGGTGTATTCCATGTGGAGAAGAATGGT
CGCTACAGCATCTCGAAGACTGAGGCCGCTGACCTCTGCAAAGCCTTCAACAGCACGCTG
CCCACCATGGCCCAGATGGAGGCGGCCCTGAACATAGGGTTTGAGACTTGCAGGTATGGG
TTCATCGATGGGCACGTGGTGATCCCCCGGATCCACCCCAATGCCATCTGTGCTGCGAAC
AACACAGGGGTGTACATCCTCGCATCCAATACCTCCCAGTATGACACGTATTGCTTCAAT
GCATCAGCTCCACCTGAAGAAGATTGTACATCAGTCACAGACCTGCCTAATACCTTCGAA
GGACCAATTACCATAACTATTGTTAACCGCGATGGCACCCGCTACACCAAGAAAGGTGAA
TACAGGACCAACCCCGAGGACATCAACCCCAGCATGGCTCCGGAGGATGATATGAGCAGT
GGATCATCCAGTGAAAGAAGCACTTCCGGGGGTTACAGCATCTTCCACACCCACCTTCCG
ACTACTACGCACCCAGACCAAGAAGGTCCTTGGGTCTCTAGCAACCCGGAGGATACCCCA
GCTACCAAAGACCAAGACCCCTACTTTGACCCCAGCGGGAGGTCCTTTACTACTCACGGA
TCTGAATCAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCCGGACCCCAGCCTCGGACAGGTTCTGGCGCCCTGCTCGTCCAGTGCTCTGCCGGCC
CCCGCCCAGCGCCCCGGCCCTTCCATGTCACCCGCTCACTCTCTCCGTCGTTCCGACGCC
ATGGACACCTTTTGGTGGCGCGCAGCTTGGGGACTCTGCCTCGTGCAGCTGAGCCTGGCG
CAGATCGATCTGAATATAACCTGCCGATACGCAGGTGTATTCCATGTGGAGAAGAATGGT
CGCTACAGCATCTCGAAGACTGAGGCCGCTGACCTCTGCAAAGCCTTCAACAGCACGCTG
CCCACCATGGCCCAGATGGAGGCGGCCCTGAACATAGGGTTTGAGACTTGCAGGTATGGG
TTCATCGATGGGCACGTGGTGATCCCCCGGATCCACCCCAATGCCATCTGTGCTGCGAAC
AACACAGGGGTGTACATCCTCGCATCCAATACCTCCCAGTATGACACGTATTGCTTCAAT
GCATCAGCTCCACCTGAAGAAGATTGTACATCAGTCACAGACCTGCCTAATACCTTCGAA
GGACCAATTACCATAACTATTGTTAACCGCGATGGCACCCGCTACACCAAGAAAGGTGAA
TACAGGACCAACCCCGAGGACATCAACCCCAGCATGGCTCCGGAGGATGATATGAGCAGT
GGATCATCCAGTGAAAGAAGCACTTCCGGGGGTTACAGCATCTTCCACACCCACCTTCCG
ACTACTACGCACCCAGACCAAGAAGGTCCTTGGGTCTCTAGCAACCCGGAGGATACCCCA
GCTACCAAAGACCAAGACCCCTACTTTGACCCCAGCGGGAGGTCCTTTACTACTCACGGA
TCTGAATCAGCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q86UZ1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q86UZ1_HUMAN

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               187-360, gnl|bosTau2|chr15 (39959816-39959643)
               

               
               187-360, gnl|canFam2|chr18 (35809380-35809152)
               

               
               187-360, gnl|dasNov1|scaffold_5578 (90994-90765)
               

               
               187-360, gnl|echTel1|scaffold_292989 (75338-75111)
               

               
               187-360, gnl|hg17|chr11 (35154641-35154868)
               

               
               187-360, gnl|Hg17|chr11 (35154697-35154870)
               

               
               187-360, gnl|loxAfr1|scaffold_421 (154622-154849)
               

               
               187-360, gnl|mm7|chr2 (102716304-102716065)
               

               
               187-360, gnl|Mm7|chr2 (102716234-102716061)
               

               
               187-360, gnl|monDom2|scaffold_33 (173966-174205)
               

               
               187-360, gnl|oryCun1|scaffold_142300 (978-740)
               

               
               187-360, gnl|panTro1|chr9 (35580801-35581024)
               

               
               187-360, gnl|rheMac2|chr14 (36661128-36660905)
               

               
               187-360, gnl|rn3|chr3 (87972313-87972074)
               


               
               557-787, gnl|bosTau2|chr15 (39947755-39947507)
               

               
               557-787, gnl|Hg17|chr11 (35167958-35168188)
               

               
               557-787, gnl|Mm7|chr2 (102704023-102703802)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               187-360, gnl|bosTau2|chr15 (39959816-39959643)
               

               
               187-360, gnl|canFam2|chr18 (35809380-35809152)
               

               
               187-360, gnl|dasNov1|scaffold_5578 (90994-90765)
               

               
               187-360, gnl|echTel1|scaffold_292989 (75338-75111)
               

               
               187-360, gnl|hg17|chr11 (35154641-35154868)
               

               
               187-360, gnl|Hg17|chr11 (35154697-35154870)
               

               
               187-360, gnl|loxAfr1|scaffold_421 (154622-154849)
               

               
               187-360, gnl|mm7|chr2 (102716304-102716065)
               

               
               187-360, gnl|Mm7|chr2 (102716234-102716061)
               

               
               187-360, gnl|monDom2|scaffold_33 (173966-174205)
               

               
               187-360, gnl|oryCun1|scaffold_142300 (978-740)
               

               
               187-360, gnl|panTro1|chr9 (35580801-35581024)
               

               
               187-360, gnl|rheMac2|chr14 (36661128-36660905)
               

               
               187-360, gnl|rn3|chr3 (87972313-87972074)
               


               
               557-787, gnl|bosTau2|chr15 (39947755-39947507)
               

               
               557-787, gnl|Hg17|chr11 (35167958-35168188)
               

               
               557-787, gnl|Mm7|chr2 (102704023-102703802)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               eep (0.245128)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               cbl (0.114797)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.245128)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               cbl (0.114797)

	187-360, gnl\|bosTau2\|chr15 (39959816-39959643)
	187-360, gnl\|canFam2\|chr18 (35809380-35809152)
	187-360, gnl\|dasNov1\|scaffold_5578 (90994-90765)
	187-360, gnl\|echTel1\|scaffold_292989 (75338-75111)
	187-360, gnl\|hg17\|chr11 (35154641-35154868)
	187-360, gnl\|Hg17\|chr11 (35154697-35154870)
	187-360, gnl\|loxAfr1\|scaffold_421 (154622-154849)
	187-360, gnl\|mm7\|chr2 (102716304-102716065)
	187-360, gnl\|Mm7\|chr2 (102716234-102716061)
	187-360, gnl\|monDom2\|scaffold_33 (173966-174205)
	187-360, gnl\|oryCun1\|scaffold_142300 (978-740)
	187-360, gnl\|panTro1\|chr9 (35580801-35581024)
	187-360, gnl\|rheMac2\|chr14 (36661128-36660905)
	187-360, gnl\|rn3\|chr3 (87972313-87972074)

	557-787, gnl\|bosTau2\|chr15 (39947755-39947507)
	557-787, gnl\|Hg17\|chr11 (35167958-35168188)
	557-787, gnl\|Mm7\|chr2 (102704023-102703802)