Non-Coding RNA Search

Ss1.1-Tra1-TCH01F010102.5

Sequence:


               
               AACTGTCAGGTTGCTGCTAAGGAAGCTGCTGAGTTCGCTGTTGTTTCAGCGGCTAACGCG
GCGAGAAGACACTGAAAGAGAAGTCCAGCTGCTTCTCCCCTGCGCCTTTACTCTCCACTC
CGACGTGGGGAAGGACCTTCGCACCCTCTCTGCCTACCTCCAGTTAGGACTGGTCGAGGA
CTCAGGGACGTCACTCTGCTGCCAGCTCTCAAGTTAATTCACTGTTCCTCTGCCTCTTGG
GAGTTAATTTGAATTCCCGGACCCCCGCCTCTCCCAGCTGCCAGTATTTGTACAGAATGT
CATCTGATGAGGAAAGAGGCTCACCTCCGGTTTTACGTAATGACTCCGACCGAGGCAGTT
CTGTCTCTTCAGATCTTCAGGAAGAGTATGAAGAACTGCTTCGTTATGCTGTAGTGACTC
CAACTATTGAATCAAGTGCTTTACAGCCCTCTCATTCTAAGGGAGAAGTGGTGCCAGATA
CTAGAATTCCTACTATAATTGATGATATTCTTCAAAATCAAGAAAATAGTCCTGCAGTAA
GAGAAACAAGGATGGAAGTTGGAAAAGGATGTGATTTAAATATTTCAGGTCATTCAAAGA
CTGATGGCTCATCACCAGTGTCATCCCCCAGGAAGCCGCCTCACCCGGTCATGGATTTTT
TCAGTACAAATCTTTTAGTTGACTCTTCCTCACCAGGGTCTCATTCTAGTCCTATAGATG
CCCATGAAATTGTTGTGAGCGATTTTCTTATTTCTGATGAAAACCTTCAAAAGATGGAAA
ACGTGCTTGATCTTTGGAGTTCAGGGCTTAAGACAAACATCATATCTGAACTAAGTAAAT
GGAGACTTAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTGTCAGGTTGCTGCTAAGGAAGCTGCTGAGTTCGCTGTTGTTTCAGCGGCTAACGCG
GCGAGAAGACACTGAAAGAGAAGTCCAGCTGCTTCTCCCCTGCGCCTTTACTCTCCACTC
CGACGTGGGGAAGGACCTTCGCACCCTCTCTGCCTACCTCCAGTTAGGACTGGTCGAGGA
CTCAGGGACGTCACTCTGCTGCCAGCTCTCAAGTTAATTCACTGTTCCTCTGCCTCTTGG
GAGTTAATTTGAATTCCCGGACCCCCGCCTCTCCCAGCTGCCAGTATTTGTACAGAATGT
CATCTGATGAGGAAAGAGGCTCACCTCCGGTTTTACGTAATGACTCCGACCGAGGCAGTT
CTGTCTCTTCAGATCTTCAGGAAGAGTATGAAGAACTGCTTCGTTATGCTGTAGTGACTC
CAACTATTGAATCAAGTGCTTTACAGCCCTCTCATTCTAAGGGAGAAGTGGTGCCAGATA
CTAGAATTCCTACTATAATTGATGATATTCTTCAAAATCAAGAAAATAGTCCTGCAGTAA
GAGAAACAAGGATGGAAGTTGGAAAAGGATGTGATTTAAATATTTCAGGTCATTCAAAGA
CTGATGGCTCATCACCAGTGTCATCCCCCAGGAAGCCGCCTCACCCGGTCATGGATTTTT
TCAGTACAAATCTTTTAGTTGACTCTTCCTCACCAGGGTCTCATTCTAGTCCTATAGATG
CCCATGAAATTGTTGTGAGCGATTTTCTTATTTCTGATGAAAACCTTCAAAAGATGGAAA
ACGTGCTTGATCTTTGGAGTTCAGGGCTTAAGACAAACATCATATCTGAACTAAGTAAAT
GGAGACTTAATT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q6P085_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q6P085_HUMAN

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               124-308, gnl|bosTau2|chr10 (1494434-1494612)
               

               
               124-308, gnl|Hg17|chr5 (75048499-75048315)
               

               
               124-308, gnl|Mm7|chr13 (93458000-93458150)
               


               
               379-518, gnl|bosTau2|chr10 (1502780-1502919)
               

               
               379-518, gnl|Hg17|chr5 (75039458-75039322)
               

               
               379-518, gnl|Mm7|chr13 (93462582-93462715)
               


               
               609-812, gnl|bosTau2|chr10 (1505567-1505770)
               

               
               609-812, gnl|Hg17|chr5 (75034395-75034186)
               

               
               609-812, gnl|Mm7|chr13 (93465992-93466187)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               124-308, gnl|bosTau2|chr10 (1494434-1494612)
               

               
               124-308, gnl|Hg17|chr5 (75048499-75048315)
               

               
               124-308, gnl|Mm7|chr13 (93458000-93458150)
               


               
               379-518, gnl|bosTau2|chr10 (1502780-1502919)
               

               
               379-518, gnl|Hg17|chr5 (75039458-75039322)
               

               
               379-518, gnl|Mm7|chr13 (93462582-93462715)
               


               
               609-812, gnl|bosTau2|chr10 (1505567-1505770)
               

               
               609-812, gnl|Hg17|chr5 (75034395-75034186)
               

               
               609-812, gnl|Mm7|chr13 (93465992-93466187)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ldo (0.0970026)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.0970026)

	124-308, gnl\|bosTau2\|chr10 (1494434-1494612)
	124-308, gnl\|Hg17\|chr5 (75048499-75048315)
	124-308, gnl\|Mm7\|chr13 (93458000-93458150)

	379-518, gnl\|bosTau2\|chr10 (1502780-1502919)
	379-518, gnl\|Hg17\|chr5 (75039458-75039322)
	379-518, gnl\|Mm7\|chr13 (93462582-93462715)

	609-812, gnl\|bosTau2\|chr10 (1505567-1505770)
	609-812, gnl\|Hg17\|chr5 (75034395-75034186)
	609-812, gnl\|Mm7\|chr13 (93465992-93466187)