Non-Coding RNA Search

Ss1.1-Tra1-TCH01F020009.5

Sequence:


               
               CTGGGAGCCCCCAGGGTCCTTGAGACCCCAGCAGCCCCACAAGGCCTGGCACTGGCCTGG
CACTGGCAGTGTGGGGGGCGGGTGGAAGCTGCAGGGGCATCAGAGGGGCTGTTCTGCACA
GACCATGGCCTTGCAGACGGCTCGGCCCCACCTGGGATCCCGGGGGACCCGCACTCCTAG
AAGCCTCCTGCTCCTGCTTCTCAGCCTCGGGTGGGTGCCACCTTCCAGGGCCCAGGCTGC
AGACACGGGACAGGGCGTCCTGATCCCATGGCTGCAGCGCACCTCCGGGGATCTGTCCTG
GCAGCCGCCTGAGCCGACGGCCATCCGTCCAAGGCCTCAGGGGGGCACAGAGAAGCGGGA
CTGCCCCCCGGGGCGGAAGGCCCAGGTGGTGGATGAACACCTCGTGTTCTACGAGGATTG
GGAGCTGGAGGCCTGTGTGGATGGGGCCCTGCTGGCCGATCAGATGGACCAGGTGAACCT
GATCCCCTTCACCTACGAGCAACTGCACGTCTTCAAGCTCAAACTGGATGAGCTCTACCC
ACAGGGCTATCCCACCTCCCTGGTCCAGCGCCTGAGGTACTTCTTCCTCTCGGTCACCCC
CGAGGACATCTGCAAGTGGAATGTGACATCCCTGGAGACTGTGAAATCTCTGCTCAAAGT
CAGCAAAGGGCGGGGGATGGATGCACAGGTGGCCGCCCTGATTGCCCGCTATGTAGGGGG
AGGGGGCCAACTAGACGGCGCCACCTTGGACATCCTAGCCACTTTCTGCCCTACCTACCT
GTGCTTCCTCAGCCCTGAGCAGCTGAGCTCTATACAGCTCAGCGTTGTTCGGGTGACCAG
GCCCCTGGACCTGGACACGTGCAGCCCCCTGCAGGTGGCTGTCCTCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGGAGCCCCCAGGGTCCTTGAGACCCCAGCAGCCCCACAAGGCCTGGCACTGGCCTGG
CACTGGCAGTGTGGGGGGCGGGTGGAAGCTGCAGGGGCATCAGAGGGGCTGTTCTGCACA
GACCATGGCCTTGCAGACGGCTCGGCCCCACCTGGGATCCCGGGGGACCCGCACTCCTAG
AAGCCTCCTGCTCCTGCTTCTCAGCCTCGGGTGGGTGCCACCTTCCAGGGCCCAGGCTGC
AGACACGGGACAGGGCGTCCTGATCCCATGGCTGCAGCGCACCTCCGGGGATCTGTCCTG
GCAGCCGCCTGAGCCGACGGCCATCCGTCCAAGGCCTCAGGGGGGCACAGAGAAGCGGGA
CTGCCCCCCGGGGCGGAAGGCCCAGGTGGTGGATGAACACCTCGTGTTCTACGAGGATTG
GGAGCTGGAGGCCTGTGTGGATGGGGCCCTGCTGGCCGATCAGATGGACCAGGTGAACCT
GATCCCCTTCACCTACGAGCAACTGCACGTCTTCAAGCTCAAACTGGATGAGCTCTACCC
ACAGGGCTATCCCACCTCCCTGGTCCAGCGCCTGAGGTACTTCTTCCTCTCGGTCACCCC
CGAGGACATCTGCAAGTGGAATGTGACATCCCTGGAGACTGTGAAATCTCTGCTCAAAGT
CAGCAAAGGGCGGGGGATGGATGCACAGGTGGCCGCCCTGATTGCCCGCTATGTAGGGGG
AGGGGGCCAACTAGACGGCGCCACCTTGGACATCCTAGCCACTTTCTGCCCTACCTACCT
GTGCTTCCTCAGCCCTGAGCAGCTGAGCTCTATACAGCTCAGCGTTGTTCGGGTGACCAG
GCCCCTGGACCTGGACACGTGCAGCCCCCTGCAGGTGGCTGTCCTCTA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61810093|ref|XP_594389.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61810093|ref|XP_594389.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               358-532, gnl|bosTau2|chr25 (1150698-1150524)
               

               
               358-532, gnl|Hg17|chr16 (756064-756238)
               

               
               358-532, gnl|Mm7|chr17 (23934089-23933915)
               


               
               684-832, gnl|bosTau2|chr25 (1150104-1149956)
               

               
               684-832, gnl|Hg17|chr16 (756664-756812)
               

               
               684-832, gnl|Mm7|chr17 (23933418-23933270)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               358-532, gnl|bosTau2|chr25 (1150698-1150524)
               

               
               358-532, gnl|Hg17|chr16 (756064-756238)
               

               
               358-532, gnl|Mm7|chr17 (23934089-23933915)
               


               
               684-832, gnl|bosTau2|chr25 (1150104-1149956)
               

               
               684-832, gnl|Hg17|chr16 (756664-756812)
               

               
               684-832, gnl|Mm7|chr17 (23933418-23933270)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	358-532, gnl\|bosTau2\|chr25 (1150698-1150524)
	358-532, gnl\|Hg17\|chr16 (756064-756238)
	358-532, gnl\|Mm7\|chr17 (23934089-23933915)

	684-832, gnl\|bosTau2\|chr25 (1150104-1149956)
	684-832, gnl\|Hg17\|chr16 (756664-756812)
	684-832, gnl\|Mm7\|chr17 (23933418-23933270)