Ss1.1-Tra1-TCH01F020027.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGTACTTGAGTTACACCTGCAACTTCATGGGCATCCTGGCCGGCCCGCTCTGCTCTTA CAAAGACTACATCACGTTCATCGAAGGCCGCTCGTACCACGCCGCGCAGTCGGGCGAGAG TGGAAAGGAGGGGATCCAGGGCGAAAGGACGGAGCCGTCTCCAAACGCGGCAGTGGTCCA GAAGCTCCTCATCTGCGGCCTGTCCCTGCTCTTCCACCTGACCGTCTGCAGGAGGCTGCC CGTGGAGTACAACATCGACGCGCATTTTCAGGCCACGGCGTCGTGGCCCACCAGGGTTCT CTATCTCTACGTCTCCCTTCTGGCTGCCAGACCCAAGTACTATTTCGCGTGGACGTTAGC TGACGCTATCAATAATGCTGCCGGCTTTGGTTTCCGAGGCTACGACAAGAATGGAGCAGC TCGTTGGGATTTAATTTCCAATCTGAGAATTCAGCAAATAGAGATGTCAACAAGTTTCAA GATGTTTCTTGATAATTGGAACATTCAGACAGCTCTTTGGCTCAAAAGGGTGTGTTATGA ACGCGTCTCCACGAGTCCCACCATCCAGACGTTCATCCTGTCTGCCATTTGGCACGGGGT GTACCCCGGCTATTACCTGACCTTTCTCACGGGCACCGTGATGACGTTGGCAGCACGAGC TGTGAGAAATAACTTTAGACATTACTTCCTCCAACCTCCCCAACTTAAATTATTGTATGA TATCGTAACGTGGATAGTCACTCAAATAGCAATAAGTTACACAGTTGTGCCATTTGTACT TCTGTCTATAAAACCATCCTTCATGTTTTACAGCTCCTGGTATTACAGCCTTCACTCCCT TGGTATCTTAGTATTATTGTTGTTGCCGGTGAAAAAAACTCCAAGAGGAAAGAATACGCA TGAAAATGCTCAGCTGTCACGATCCAAAAAATTGGACGAAGGAGAAAATTCTTTGGGACA GAACAGTTTCTCCACGACAAACAGTGTTTGCAGTCAGAGCCAGGAAGTAGCCTCTAGACA TTCATCATTAAAGCACTGATGGGGAAAACACTCTGACGGCTGTTTTTCGTATGTTAACAG AAACCAATCTTAGCACCTTTCAAGGGGTTTGTGTCTGTTTGGAAAGAGAGCACGTGGGGC GGGGGGGAATCAGACAGTTCTGAGTAGGGAATTCCCTGTTGACCAGATTGGAAGTGGAGG GAAATATTCCTCCCCGCTCGTCCCTGGGGGCCACGCCTTACACAAATATTTCCATTATTG CAGTGGGCACTCGGGACCTCACCATCCGTCCGTAGGGTCGTACAGGTGCCCTGTTGCTGA ATGTATGTTGCGTATCCCACGGCACTGAAGAGGAGGGCGAACAACTGTCAGTCCACGTGA TTGAGAAAAATTAACTTTTCCAAATGAATGTCTTGCCTTAAACCCTCTATTTCCTAAAAT ATTGTTCCTAAATGGTATTTCCACGTGTCCTATTGTATGAACACTATTTCTCTGTTCTGT GTCGTATGCTGCCCAGGAATCCTGGAGGAATTGGAACAGGATACTTCAGAATGTGGGTAC TTTAACATGCAATAAACATCTCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGTACTTGAGTTACACCTGCAACTTCATGGGCATCCTGGCCGGCCCGCTCTGCTCTTA CAAAGACTACATCACGTTCATCGAAGGCCGCTCGTACCACGCCGCGCAGTCGGGCGAGAG TGGAAAGGAGGGGATCCAGGGCGAAAGGACGGAGCCGTCTCCAAACGCGGCAGTGGTCCA GAAGCTCCTCATCTGCGGCCTGTCCCTGCTCTTCCACCTGACCGTCTGCAGGAGGCTGCC CGTGGAGTACAACATCGACGCGCATTTTCAGGCCACGGCGTCGTGGCCCACCAGGGTTCT CTATCTCTACGTCTCCCTTCTGGCTGCCAGACCCAAGTACTATTTCGCGTGGACGTTAGC TGACGCTATCAATAATGCTGCCGGCTTTGGTTTCCGAGGCTACGACAAGAATGGAGCAGC TCGTTGGGATTTAATTTCCAATCTGAGAATTCAGCAAATAGAGATGTCAACAAGTTTCAA GATGTTTCTTGATAATTGGAACATTCAGACAGCTCTTTGGCTCAAAAGGGTGTGTTATGA ACGCGTCTCCACGAGTCCCACCATCCAGACGTTCATCCTGTCTGCCATTTGGCACGGGGT GTACCCCGGCTATTACCTGACCTTTCTCACGGGCACCGTGATGACGTTGGCAGCACGAGC TGTGAGAAATAACTTTAGACATTACTTCCTCCAACCTCCCCAACTTAAATTATTGTATGA TATCGTAACGTGGATAGTCACTCAAATAGCAATAAGTTACACAGTTGTGCCATTTGTACT TCTGTCTATAAAACCATCCTTCATGTTTTACAGCTCCTGGTATTACAGCCTTCACTCCCT TGGTATCTTAGTATTATTGTTGTTGCCGGTGAAAAAAACTCCAAGAGGAAAGAATACGCA TGAAAATGCTCAGCTGTCACGATCCAAAAAATTGGACGAAGGAGAAAATTCTTTGGGACA GAACAGTTTCTCCACGACAAACAGTGTTTGCAGTCAGAGCCAGGAAGTAGCCTCTAGACA TTCATCATTAAAGCACTGATGGGGAAAACACTCTGACGGCTGTTTTTCGTATGTTAACAG AAACCAATCTTAGCACCTTTCAAGGGGTTTGTGTCTGTTTGGAAAGAGAGCACGTGGGGC GGGGGGGAATCAGACAGTTCTGAGTAGGGAATTCCCTGTTGACCAGATTGGAAGTGGAGG GAAATATTCCTCCCCGCTCGTCCCTGGGGGCCACGCCTTACACAAATATTTCCATTATTG CAGTGGGCACTCGGGACCTCACCATCCGTCCGTAGGGTCGTACAGGTGCCCTGTTGCTGA ATGTATGTTGCGTATCCCACGGCACTGAAGAGGAGGGCGAACAACTGTCAGTCCACGTGA TTGAGAAAAATTAACTTTTCCAAATGAATGTCTTGCCTTAAACCCTCTATTTCCTAAAAT ATTGTTCCTAAATGGTATTTCCACGTGTCCTATTGTATGAACACTATTTCTCTGTTCTGT GTCGTATGCTGCCCAGGAATCCTGGAGGAATTGGAACAGGATACTTCAGAATGTGGGTAC TTTAACATGCAATAAACATCTCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1367-1477, - strand, RNAz p=0.645243 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1367-1477, - strand, RNAz p=0.645243 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AK027321, - |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 1-165, gnl|bosTau2|chr11 (69316422-69316258) | |
| 1-165, gnl|Hg17|chr2 (8967923-8967759) | |
| 1-165, gnl|Mm7|chr12 (22783023-22783184) | |
| 170-359, gnl|bosTau2|chr11 (69312947-69312758) | |
| 170-359, gnl|Hg17|chr2 (8964025-8963836) | |
| 170-359, gnl|Mm7|chr12 (22784690-22784879) | |
| 527-666, gnl|bosTau2|chr11 (69309631-69309492) | |
| 527-666, gnl|canFam2|chr17 (9072944-9073090) | |
| 527-666, gnl|danRer3|chr20 (36642599-36642745) | |
| 527-666, gnl|dasNov1|scaffold_3007 (103635-103489) | |
| 527-666, gnl|fr1|chrUn (343727783-343727929) | |
| 527-666, gnl|galGal2|chr3 (94216135-94216281) | |
| 527-666, gnl|hg17|chr2 (8953312-8953458) | |
| 527-666, gnl|Hg17|chr2 (8953452-8953313) | |
| 527-666, gnl|loxAfr1|scaffold_16218 (24704-24569) | |
| 527-666, gnl|mm7|chr12 (22791916-22791770) | |
| 527-666, gnl|Mm7|chr12 (22791774-22791913) | |
| 527-666, gnl|monDom2|scaffold_1 (126358834-126358980) | |
| 527-666, gnl|oryCun1|scaffold_205708 (60623-60769) | |
| 527-666, gnl|panTro1|chr12 (9607044-9607190) | |
| 527-666, gnl|rheMac2|chr13 (8952599-8952745) | |
| 527-666, gnl|rn3|chr6 (42606376-42606230) | |
| 527-666, gnl|tetNig1|chr10 (5957466-5957321) | |
| 527-666, gnl|xenTro1|scaffold_86 (301880-301734) | |
| 797-1584, gnl|bosTau2|chr11 (69304909-69304121) | |
| 797-1584, gnl|canFam2|chr17 (9068136-9068881) | |
| 797-1584, gnl|dasNov1|scaffold_39926 (5973-6719) | |
| 797-1584, gnl|galGal2|chr3 (94214232-94214981) | |
| 797-1584, gnl|hg17|chr2 (8948827-8949572) | |
| 797-1584, gnl|Hg17|chr2 (8949649-8948856) | |
| 797-1584, gnl|loxAfr1|scaffold_31563 (1621-870) | |
| 797-1584, gnl|mm7|chr12 (22796217-22795496) | |
| 797-1584, gnl|Mm7|chr12 (22795419-22796186) | |
| 797-1584, gnl|monDom2|scaffold_1 (126354250-126354997) | |
| 797-1584, gnl|oryCun1|scaffold_16370 (1689-1007) | |
| 797-1584, gnl|panTro1|chr12 (9602555-9603301) | |
| 797-1584, gnl|rheMac2|chr13 (8948232-8948970) | |
| 797-1584, gnl|rn3|chr6 (42610527-42609803) | |
| 797-1584, gnl|xenTro1|scaffold_86 (305358-304628) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-165, gnl|bosTau2|chr11 (69316422-69316258) | |
| 1-165, gnl|Hg17|chr2 (8967923-8967759) | |
| 1-165, gnl|Mm7|chr12 (22783023-22783184) | |
| 170-359, gnl|bosTau2|chr11 (69312947-69312758) | |
| 170-359, gnl|Hg17|chr2 (8964025-8963836) | |
| 170-359, gnl|Mm7|chr12 (22784690-22784879) | |
| 527-666, gnl|bosTau2|chr11 (69309631-69309492) | |
| 527-666, gnl|canFam2|chr17 (9072944-9073090) | |
| 527-666, gnl|danRer3|chr20 (36642599-36642745) | |
| 527-666, gnl|dasNov1|scaffold_3007 (103635-103489) | |
| 527-666, gnl|fr1|chrUn (343727783-343727929) | |
| 527-666, gnl|galGal2|chr3 (94216135-94216281) | |
| 527-666, gnl|hg17|chr2 (8953312-8953458) | |
| 527-666, gnl|Hg17|chr2 (8953452-8953313) | |
| 527-666, gnl|loxAfr1|scaffold_16218 (24704-24569) | |
| 527-666, gnl|mm7|chr12 (22791916-22791770) | |
| 527-666, gnl|Mm7|chr12 (22791774-22791913) | |
| 527-666, gnl|monDom2|scaffold_1 (126358834-126358980) | |
| 527-666, gnl|oryCun1|scaffold_205708 (60623-60769) | |
| 527-666, gnl|panTro1|chr12 (9607044-9607190) | |
| 527-666, gnl|rheMac2|chr13 (8952599-8952745) | |
| 527-666, gnl|rn3|chr6 (42606376-42606230) | |
| 527-666, gnl|tetNig1|chr10 (5957466-5957321) | |
| 527-666, gnl|xenTro1|scaffold_86 (301880-301734) | |
| 797-1584, gnl|bosTau2|chr11 (69304909-69304121) | |
| 797-1584, gnl|canFam2|chr17 (9068136-9068881) | |
| 797-1584, gnl|dasNov1|scaffold_39926 (5973-6719) | |
| 797-1584, gnl|galGal2|chr3 (94214232-94214981) | |
| 797-1584, gnl|hg17|chr2 (8948827-8949572) | |
| 797-1584, gnl|Hg17|chr2 (8949649-8948856) | |
| 797-1584, gnl|loxAfr1|scaffold_31563 (1621-870) | |
| 797-1584, gnl|mm7|chr12 (22796217-22795496) | |
| 797-1584, gnl|Mm7|chr12 (22795419-22796186) | |
| 797-1584, gnl|monDom2|scaffold_1 (126354250-126354997) | |
| 797-1584, gnl|oryCun1|scaffold_16370 (1689-1007) | |
| 797-1584, gnl|panTro1|chr12 (9602555-9603301) | |
| 797-1584, gnl|rheMac2|chr13 (8948232-8948970) | |
| 797-1584, gnl|rn3|chr6 (42610527-42609803) | |
| 797-1584, gnl|xenTro1|scaffold_86 (305358-304628) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| amn (0.417711) | |
| cty (0.20816) | |
| nep (0.183925) | |
| ebs (0.118301) | |
| cbl (0.114797) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| cty (0.20816) | |
| nep (0.183925) | |
| ebs (0.118301) | |
| cbl (0.114797) |