Ss1.1-Tra1-TCH01F020066.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGACTGGGACAGGGGAACTGGTAGAGGCCCAGTCCCCGCGGCCTCTGCTCCGGCTGCCA GGTTTACGCCTCGCCATGGTTCGTCTGCCTCTGAAGTGTCTCCTCTGGGGCTGCTTTTTG ACCGCCGTCCACCCAGAACCACCCACTTCATGCAAAGAAAACCAATACCCAACAAACAGC CGGTGCTGTAATTTGTGCCCGCCAGGACAGAAACTGGTGAACCACTGCACAGAGGTCACT GAAACAGAATGCCTTCCTTGCAGTTCCAGCGAATTCCTAGCCACCTGGAATAGAGAGAAA CACTGTCATCAGCACAAATACTGCGACCCCAACCTAGGTCTCCAGGTCCAGAGGGAGGGC ACCTCGAAAACAGACACCACTTGTGTGTGCAGTGAAGGCCATCACTGTACCAACAGCGCC TGTGAAAGTTGCACCTTGCACAGCTTGTGCTTCCCTGGCCTCGGGGTCAAGCAGATGGCG ACAGAGGTTTCTGACACTATCTGTGAACCCTGCCCAGTTGGCTTCTTCTCCAATGTATCA TCTGCTTCAGAAAAGTGTCAGCCTTGGACAAGCTGCGAGAGCAAAGGCCTGGTGGAACAA CGTGCGGGGACTAACAAGACCGATGTTGTCTGTGGTTTCCAGAGTCGGATGAGAGCCCTG GTGGTTATCCCCATCACGCTGGGGATCCTGTTTGCCGTCCTGTTGGTATTTCTCTGTATC AGAAAGGTGACCAAGGAGCAGGAGACTAAGGCCCTGCACCCTAAGACTGAAAGGCAGGAT CCCGTGGAGACGATTGATCTGGAGGATTTTCCCGACTCCACCGCTCCGGTGCAGGAGACC TTACATTGGTGCCAGCCCGTCACCCAGGAGGATGGCGTCCACCACTGCATTGTTCGTGAC AGTGAGTGACTGGAAACTGCTTAACTGTCCATCAACAGGCACGGGCACAGGGGCATGTGA CTGGAGAGCCCGGGGCGGCTGCTGCTGCTGTGGCGGTGGTGAGAGGGTGGTGCTGGGCAC AGCCCCCTCTGCCTGCACCCCTGCAGTCCAGATACAGTCCACCTCGAGGAGCTTCTCACC CCAGCCCTGGAGCCCATTCAATCTCAGTTTGCTTTTAAAGATGGAGACAAAACTTTGGGG AGTCACAGCCACAGTAATAACCACCAGAGCTTCCAACCCAGAGGTTCAGTACCTGCAGAT GCAAGGGATGGCGTCTAGGAGCCCAGGAGGCATATACATGACTGTCCACCACTGCATTGT TCGTGACAGTGAGTGACTGGAAACTGCTTAACTGTCCATCAACAGGGGACTGGCTAAATA AAATTGTAACAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGACTGGGACAGGGGAACTGGTAGAGGCCCAGTCCCCGCGGCCTCTGCTCCGGCTGCCA GGTTTACGCCTCGCCATGGTTCGTCTGCCTCTGAAGTGTCTCCTCTGGGGCTGCTTTTTG ACCGCCGTCCACCCAGAACCACCCACTTCATGCAAAGAAAACCAATACCCAACAAACAGC CGGTGCTGTAATTTGTGCCCGCCAGGACAGAAACTGGTGAACCACTGCACAGAGGTCACT GAAACAGAATGCCTTCCTTGCAGTTCCAGCGAATTCCTAGCCACCTGGAATAGAGAGAAA CACTGTCATCAGCACAAATACTGCGACCCCAACCTAGGTCTCCAGGTCCAGAGGGAGGGC ACCTCGAAAACAGACACCACTTGTGTGTGCAGTGAAGGCCATCACTGTACCAACAGCGCC TGTGAAAGTTGCACCTTGCACAGCTTGTGCTTCCCTGGCCTCGGGGTCAAGCAGATGGCG ACAGAGGTTTCTGACACTATCTGTGAACCCTGCCCAGTTGGCTTCTTCTCCAATGTATCA TCTGCTTCAGAAAAGTGTCAGCCTTGGACAAGCTGCGAGAGCAAAGGCCTGGTGGAACAA CGTGCGGGGACTAACAAGACCGATGTTGTCTGTGGTTTCCAGAGTCGGATGAGAGCCCTG GTGGTTATCCCCATCACGCTGGGGATCCTGTTTGCCGTCCTGTTGGTATTTCTCTGTATC AGAAAGGTGACCAAGGAGCAGGAGACTAAGGCCCTGCACCCTAAGACTGAAAGGCAGGAT CCCGTGGAGACGATTGATCTGGAGGATTTTCCCGACTCCACCGCTCCGGTGCAGGAGACC TTACATTGGTGCCAGCCCGTCACCCAGGAGGATGGCGTCCACCACTGCATTGTTCGTGAC AGTGAGTGACTGGAAACTGCTTAACTGTCCATCAACAGGCACGGGCACAGGGGCATGTGA CTGGAGAGCCCGGGGCGGCTGCTGCTGCTGTGGCGGTGGTGAGAGGGTGGTGCTGGGCAC AGCCCCCTCTGCCTGCACCCCTGCAGTCCAGATACAGTCCACCTCGAGGAGCTTCTCACC CCAGCCCTGGAGCCCATTCAATCTCAGTTTGCTTTTAAAGATGGAGACAAAACTTTGGGG AGTCACAGCCACAGTAATAACCACCAGAGCTTCCAACCCAGAGGTTCAGTACCTGCAGAT GCAAGGGATGGCGTCTAGGAGCCCAGGAGGCATATACATGACTGTCCACCACTGCATTGT TCGTGACAGTGAGTGACTGGAAACTGCTTAACTGTCCATCAACAGGGGACTGGCTAAATA AAATTGTAACAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 8-128, gnl|bosTau2|chr13 (54874933-54875053) | |
| 8-128, gnl|canFam2|chr24 (36349077-36349494) | |
| 8-128, gnl|echTel1|scaffold_173161 (3429-3824) | |
| 8-128, gnl|hg17|chr20 (44180110-44180519) | |
| 8-128, gnl|Hg17|chr20 (44180323-44180442) | |
| 8-128, gnl|mm7|chr2 (164796067-164796503) | |
| 8-128, gnl|Mm7|chr2 (164796295-164796414) | |
| 8-128, gnl|monDom2|scaffold_35 (25535295-25535726) | |
| 8-128, gnl|oryCun1|scaffold_210050 (11392-10981) | |
| 8-128, gnl|rheMac2|chr10 (18364852-18364432) | |
| 8-128, gnl|rn3|chr3 (155998395-155998798) | |
| 202-331, gnl|bosTau2|chr13 (54878835-54878964) | |
| 202-331, gnl|canFam2|chr24 (36352831-36352942) | |
| 202-331, gnl|dasNov1|scaffold_4244 (58519-58625) | |
| 202-331, gnl|echTel1|scaffold_168797 (3958-4069) | |
| 202-331, gnl|hg17|chr20 (44184254-44184365) | |
| 202-331, gnl|Hg17|chr20 (44184275-44184404) | |
| 202-331, gnl|mm7|chr2 (164803290-164803401) | |
| 202-331, gnl|Mm7|chr2 (164803311-164803440) | |
| 202-331, gnl|monDom2|scaffold_35 (25545248-25545365) | |
| 202-331, gnl|oryCun1|scaffold_210050 (7753-7642) | |
| 202-331, gnl|rheMac2|chr10 (18360698-18360587) | |
| 202-331, gnl|rn3|chr3 (156005420-156005533) | |
| 332-476, gnl|bosTau2|chr13 (54879235-54879379) | |
| 332-476, gnl|canFam2|chr24 (36353191-36353401) | |
| 332-476, gnl|galGal2|chr20 (10140448-10140652) | |
| 332-476, gnl|hg17|chr20 (44184603-44184814) | |
| 332-476, gnl|Hg17|chr20 (44184656-44184800) | |
| 332-476, gnl|mm7|chr2 (164803624-164803834) | |
| 332-476, gnl|Mm7|chr2 (164803676-164803820) | |
| 332-476, gnl|monDom2|scaffold_35 (25545516-25545738) | |
| 332-476, gnl|oryCun1|scaffold_210050 (7120-6909) | |
| 332-476, gnl|rheMac2|chr10 (18360337-18360126) | |
| 332-476, gnl|rn3|chr3 (156005756-156005969) | |
| 749-1332, gnl|bosTau2|chr13 (54885083-54885647) | |
| 749-1332, gnl|Hg17|chr20 (44190926-44191552) | |
| 749-1332, gnl|Mm7|chr2 (164811374-164811920) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 8-128, gnl|bosTau2|chr13 (54874933-54875053) | |
| 8-128, gnl|canFam2|chr24 (36349077-36349494) | |
| 8-128, gnl|echTel1|scaffold_173161 (3429-3824) | |
| 8-128, gnl|hg17|chr20 (44180110-44180519) | |
| 8-128, gnl|Hg17|chr20 (44180323-44180442) | |
| 8-128, gnl|mm7|chr2 (164796067-164796503) | |
| 8-128, gnl|Mm7|chr2 (164796295-164796414) | |
| 8-128, gnl|monDom2|scaffold_35 (25535295-25535726) | |
| 8-128, gnl|oryCun1|scaffold_210050 (11392-10981) | |
| 8-128, gnl|rheMac2|chr10 (18364852-18364432) | |
| 8-128, gnl|rn3|chr3 (155998395-155998798) | |
| 202-331, gnl|bosTau2|chr13 (54878835-54878964) | |
| 202-331, gnl|canFam2|chr24 (36352831-36352942) | |
| 202-331, gnl|dasNov1|scaffold_4244 (58519-58625) | |
| 202-331, gnl|echTel1|scaffold_168797 (3958-4069) | |
| 202-331, gnl|hg17|chr20 (44184254-44184365) | |
| 202-331, gnl|Hg17|chr20 (44184275-44184404) | |
| 202-331, gnl|mm7|chr2 (164803290-164803401) | |
| 202-331, gnl|Mm7|chr2 (164803311-164803440) | |
| 202-331, gnl|monDom2|scaffold_35 (25545248-25545365) | |
| 202-331, gnl|oryCun1|scaffold_210050 (7753-7642) | |
| 202-331, gnl|rheMac2|chr10 (18360698-18360587) | |
| 202-331, gnl|rn3|chr3 (156005420-156005533) | |
| 332-476, gnl|bosTau2|chr13 (54879235-54879379) | |
| 332-476, gnl|canFam2|chr24 (36353191-36353401) | |
| 332-476, gnl|galGal2|chr20 (10140448-10140652) | |
| 332-476, gnl|hg17|chr20 (44184603-44184814) | |
| 332-476, gnl|Hg17|chr20 (44184656-44184800) | |
| 332-476, gnl|mm7|chr2 (164803624-164803834) | |
| 332-476, gnl|Mm7|chr2 (164803676-164803820) | |
| 332-476, gnl|monDom2|scaffold_35 (25545516-25545738) | |
| 332-476, gnl|oryCun1|scaffold_210050 (7120-6909) | |
| 332-476, gnl|rheMac2|chr10 (18360337-18360126) | |
| 332-476, gnl|rn3|chr3 (156005756-156005969) | |
| 749-1332, gnl|bosTau2|chr13 (54885083-54885647) | |
| 749-1332, gnl|Hg17|chr20 (44190926-44191552) | |
| 749-1332, gnl|Mm7|chr2 (164811374-164811920) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cly (0.361925) | |
| ill (0.175593) | |
| csp (0.161186) |